Experiment: root EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02330 and ABZR87_RS02335 are separated by 9 nucleotides ABZR87_RS02335 and ABZR87_RS02340 are separated by 635 nucleotides
ABZR87_RS02330: ABZR87_RS02330 - cytochrome o ubiquinol oxidase subunit I, at 497,805 to 499,784
_RS02330
ABZR87_RS02335: ABZR87_RS02335 - ubiquinol oxidase subunit II, at 499,794 to 500,747
_RS02335
ABZR87_RS02340: ABZR87_RS02340 - Nramp family divalent metal transporter, at 501,383 to 503,026
_RS02340
Position (kb) 499
500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 498.922 kb on + strand, within ABZR87_RS02330 at 498.922 kb on + strand, within ABZR87_RS02330 at 498.922 kb on + strand, within ABZR87_RS02330 at 498.922 kb on + strand, within ABZR87_RS02330 at 498.923 kb on - strand, within ABZR87_RS02330 at 498.923 kb on - strand, within ABZR87_RS02330 at 498.923 kb on - strand, within ABZR87_RS02330 at 498.923 kb on - strand, within ABZR87_RS02330 at 498.961 kb on + strand, within ABZR87_RS02330 at 498.962 kb on - strand, within ABZR87_RS02330 at 498.962 kb on - strand, within ABZR87_RS02330 at 498.962 kb on - strand, within ABZR87_RS02330 at 498.975 kb on - strand, within ABZR87_RS02330 at 499.216 kb on + strand, within ABZR87_RS02330 at 499.216 kb on + strand, within ABZR87_RS02330 at 499.216 kb on + strand, within ABZR87_RS02330 at 499.216 kb on + strand, within ABZR87_RS02330 at 499.217 kb on - strand, within ABZR87_RS02330 at 499.217 kb on - strand, within ABZR87_RS02330 at 499.220 kb on - strand, within ABZR87_RS02330 at 499.220 kb on - strand, within ABZR87_RS02330 at 499.220 kb on - strand, within ABZR87_RS02330 at 499.243 kb on + strand, within ABZR87_RS02330 at 499.243 kb on + strand, within ABZR87_RS02330 at 499.490 kb on - strand, within ABZR87_RS02330 at 499.603 kb on + strand at 499.603 kb on + strand at 499.603 kb on + strand at 499.603 kb on + strand at 499.603 kb on + strand at 499.604 kb on - strand at 499.604 kb on - strand at 499.658 kb on - strand at 499.675 kb on + strand at 499.675 kb on + strand at 499.676 kb on - strand at 499.676 kb on - strand at 499.676 kb on - strand at 499.796 kb on - strand at 499.939 kb on + strand, within ABZR87_RS02335 at 499.939 kb on + strand, within ABZR87_RS02335 at 499.939 kb on + strand, within ABZR87_RS02335 at 499.939 kb on + strand, within ABZR87_RS02335 at 499.939 kb on + strand, within ABZR87_RS02335 at 499.940 kb on - strand, within ABZR87_RS02335 at 499.940 kb on - strand, within ABZR87_RS02335 at 499.940 kb on - strand, within ABZR87_RS02335 at 499.940 kb on - strand, within ABZR87_RS02335 at 499.984 kb on + strand, within ABZR87_RS02335 at 499.984 kb on + strand, within ABZR87_RS02335 at 499.985 kb on - strand, within ABZR87_RS02335 at 500.146 kb on + strand, within ABZR87_RS02335 at 500.224 kb on + strand, within ABZR87_RS02335 at 500.224 kb on + strand, within ABZR87_RS02335 at 500.224 kb on + strand, within ABZR87_RS02335 at 500.224 kb on + strand, within ABZR87_RS02335 at 500.224 kb on + strand, within ABZR87_RS02335 at 500.350 kb on + strand, within ABZR87_RS02335 at 500.425 kb on + strand, within ABZR87_RS02335 at 500.426 kb on - strand, within ABZR87_RS02335 at 500.450 kb on + strand, within ABZR87_RS02335 at 500.450 kb on + strand, within ABZR87_RS02335 at 500.450 kb on + strand, within ABZR87_RS02335 at 500.451 kb on - strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.452 kb on + strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.453 kb on - strand, within ABZR87_RS02335 at 500.543 kb on - strand, within ABZR87_RS02335 at 500.569 kb on + strand, within ABZR87_RS02335 at 500.569 kb on + strand, within ABZR87_RS02335 at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.747 kb on + strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.748 kb on - strand at 500.877 kb on - strand at 500.877 kb on - strand at 500.892 kb on + strand at 500.892 kb on + strand at 501.076 kb on + strand at 501.077 kb on - strand at 501.077 kb on - strand at 501.077 kb on - strand at 501.131 kb on - strand at 501.158 kb on + strand at 501.174 kb on + strand at 501.175 kb on - strand at 501.175 kb on - strand at 501.175 kb on - strand at 501.175 kb on - strand at 501.212 kb on + strand at 501.219 kb on - strand at 501.225 kb on + strand at 501.225 kb on + strand at 501.225 kb on + strand at 501.226 kb on - strand at 501.385 kb on - strand at 501.441 kb on + strand at 501.722 kb on + strand, within ABZR87_RS02340 at 501.722 kb on + strand, within ABZR87_RS02340 at 501.723 kb on - strand, within ABZR87_RS02340 at 501.723 kb on - strand, within ABZR87_RS02340 at 501.723 kb on - strand, within ABZR87_RS02340 at 501.723 kb on - strand, within ABZR87_RS02340 at 501.723 kb on - strand, within ABZR87_RS02340
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB remove 498,922 + ABZR87_RS02330 0.56 -0.2 498,922 + ABZR87_RS02330 0.56 +2.9 498,922 + ABZR87_RS02330 0.56 -2.5 498,922 + ABZR87_RS02330 0.56 -1.2 498,923 - ABZR87_RS02330 0.56 +0.9 498,923 - ABZR87_RS02330 0.56 +0.1 498,923 - ABZR87_RS02330 0.56 -2.1 498,923 - ABZR87_RS02330 0.56 -0.1 498,961 + ABZR87_RS02330 0.58 -0.4 498,962 - ABZR87_RS02330 0.58 +0.7 498,962 - ABZR87_RS02330 0.58 +0.2 498,962 - ABZR87_RS02330 0.58 +0.1 498,975 - ABZR87_RS02330 0.59 -1.4 499,216 + ABZR87_RS02330 0.71 -0.4 499,216 + ABZR87_RS02330 0.71 -2.8 499,216 + ABZR87_RS02330 0.71 -2.6 499,216 + ABZR87_RS02330 0.71 +1.9 499,217 - ABZR87_RS02330 0.71 -1.4 499,217 - ABZR87_RS02330 0.71 +1.4 499,220 - ABZR87_RS02330 0.71 -0.4 499,220 - ABZR87_RS02330 0.71 -1.5 499,220 - ABZR87_RS02330 0.71 +0.2 499,243 + ABZR87_RS02330 0.73 -0.3 499,243 + ABZR87_RS02330 0.73 -1.8 499,490 - ABZR87_RS02330 0.85 -1.5 499,603 + -2.1 499,603 + +1.5 499,603 + -0.2 499,603 + -1.1 499,603 + +1.9 499,604 - +0.3 499,604 - -0.5 499,658 - -1.6 499,675 + +0.3 499,675 + +0.5 499,676 - +0.4 499,676 - -0.3 499,676 - +1.7 499,796 - +1.8 499,939 + ABZR87_RS02335 0.15 +2.3 499,939 + ABZR87_RS02335 0.15 +1.0 499,939 + ABZR87_RS02335 0.15 -0.5 499,939 + ABZR87_RS02335 0.15 -1.0 499,939 + ABZR87_RS02335 0.15 -0.5 499,940 - ABZR87_RS02335 0.15 -0.8 499,940 - ABZR87_RS02335 0.15 -0.8 499,940 - ABZR87_RS02335 0.15 -0.8 499,940 - ABZR87_RS02335 0.15 +0.7 499,984 + ABZR87_RS02335 0.20 -0.1 499,984 + ABZR87_RS02335 0.20 -2.1 499,985 - ABZR87_RS02335 0.20 -0.5 500,146 + ABZR87_RS02335 0.37 +1.4 500,224 + ABZR87_RS02335 0.45 +1.1 500,224 + ABZR87_RS02335 0.45 -2.2 500,224 + ABZR87_RS02335 0.45 +1.8 500,224 + ABZR87_RS02335 0.45 -0.8 500,224 + ABZR87_RS02335 0.45 +1.4 500,350 + ABZR87_RS02335 0.58 -1.5 500,425 + ABZR87_RS02335 0.66 -1.3 500,426 - ABZR87_RS02335 0.66 -0.8 500,450 + ABZR87_RS02335 0.69 -0.2 500,450 + ABZR87_RS02335 0.69 +0.2 500,450 + ABZR87_RS02335 0.69 -0.7 500,451 - ABZR87_RS02335 0.69 +2.5 500,452 + ABZR87_RS02335 0.69 +1.3 500,452 + ABZR87_RS02335 0.69 -0.8 500,452 + ABZR87_RS02335 0.69 -1.2 500,452 + ABZR87_RS02335 0.69 +0.4 500,452 + ABZR87_RS02335 0.69 -0.9 500,452 + ABZR87_RS02335 0.69 -1.2 500,453 - ABZR87_RS02335 0.69 +1.9 500,453 - ABZR87_RS02335 0.69 -0.7 500,453 - ABZR87_RS02335 0.69 +1.4 500,453 - ABZR87_RS02335 0.69 -2.4 500,453 - ABZR87_RS02335 0.69 -0.1 500,453 - ABZR87_RS02335 0.69 -2.5 500,543 - ABZR87_RS02335 0.79 +2.7 500,569 + ABZR87_RS02335 0.81 -0.5 500,569 + ABZR87_RS02335 0.81 +0.2 500,747 + +0.9 500,747 + +0.1 500,747 + -0.8 500,747 + +0.4 500,747 + -1.5 500,747 + -2.7 500,747 + -1.6 500,747 + +1.5 500,747 + -0.9 500,747 + -0.3 500,748 - +2.9 500,748 - -1.8 500,748 - +2.1 500,748 - -0.6 500,748 - +1.1 500,748 - -1.9 500,748 - -1.7 500,877 - +0.1 500,877 - +0.4 500,892 + +1.4 500,892 + -0.5 501,076 + +0.4 501,077 - -2.2 501,077 - +1.4 501,077 - +2.9 501,131 - +0.0 501,158 + +0.2 501,174 + +0.7 501,175 - -2.3 501,175 - -1.8 501,175 - -2.1 501,175 - -0.0 501,212 + +1.3 501,219 - +0.2 501,225 + -0.5 501,225 + +0.9 501,225 + -1.0 501,226 - -1.7 501,385 - -0.4 501,441 + +1.6 501,722 + ABZR87_RS02340 0.21 +2.7 501,722 + ABZR87_RS02340 0.21 -1.3 501,723 - ABZR87_RS02340 0.21 +1.3 501,723 - ABZR87_RS02340 0.21 +1.4 501,723 - ABZR87_RS02340 0.21 +0.3 501,723 - ABZR87_RS02340 0.21 +0.8 501,723 - ABZR87_RS02340 0.21 -0.3
Or see this region's nucleotide sequence