Experiment: root EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00810 and ABZR87_RS00815 are separated by 160 nucleotides ABZR87_RS00815 and ABZR87_RS00820 are separated by 67 nucleotides ABZR87_RS00820 and ABZR87_RS00825 are separated by 105 nucleotides
ABZR87_RS00810: ABZR87_RS00810 - helix-turn-helix domain-containing protein, at 161,697 to 162,713
_RS00810
ABZR87_RS00815: ABZR87_RS00815 - acylase, at 162,874 to 165,258
_RS00815
ABZR87_RS00820: ABZR87_RS00820 - YajQ family cyclic di-GMP-binding protein, at 165,326 to 165,811
_RS00820
ABZR87_RS00825: ABZR87_RS00825 - UDP-N-acetylmuramate dehydrogenase, at 165,917 to 166,945
_RS00825
Position (kb) 162
163
164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 162.104 kb on + strand, within ABZR87_RS00810 at 162.104 kb on + strand, within ABZR87_RS00810 at 162.105 kb on - strand, within ABZR87_RS00810 at 162.105 kb on - strand, within ABZR87_RS00810 at 162.373 kb on + strand, within ABZR87_RS00810 at 162.373 kb on + strand, within ABZR87_RS00810 at 162.668 kb on + strand at 162.668 kb on + strand at 162.669 kb on - strand at 162.669 kb on - strand at 162.721 kb on + strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.723 kb on + strand at 162.723 kb on + strand at 162.723 kb on + strand at 162.723 kb on + strand at 162.724 kb on - strand at 162.739 kb on + strand at 162.740 kb on - strand at 162.740 kb on - strand at 162.775 kb on + strand at 162.776 kb on - strand at 162.844 kb on - strand at 162.844 kb on - strand at 163.045 kb on + strand at 163.046 kb on - strand at 163.046 kb on - strand at 163.046 kb on - strand at 163.072 kb on + strand at 163.072 kb on + strand at 163.072 kb on + strand at 163.073 kb on - strand at 163.073 kb on - strand at 163.073 kb on - strand at 163.079 kb on - strand at 163.294 kb on + strand, within ABZR87_RS00815 at 163.294 kb on + strand, within ABZR87_RS00815 at 163.294 kb on + strand, within ABZR87_RS00815 at 163.295 kb on - strand, within ABZR87_RS00815 at 163.295 kb on - strand, within ABZR87_RS00815 at 163.306 kb on + strand, within ABZR87_RS00815 at 163.306 kb on + strand, within ABZR87_RS00815 at 163.307 kb on - strand, within ABZR87_RS00815 at 163.315 kb on + strand, within ABZR87_RS00815 at 163.605 kb on + strand, within ABZR87_RS00815 at 163.606 kb on - strand, within ABZR87_RS00815 at 163.666 kb on + strand, within ABZR87_RS00815 at 163.666 kb on + strand, within ABZR87_RS00815 at 163.797 kb on + strand, within ABZR87_RS00815 at 163.797 kb on + strand, within ABZR87_RS00815 at 163.798 kb on - strand, within ABZR87_RS00815 at 163.840 kb on + strand, within ABZR87_RS00815 at 163.840 kb on + strand, within ABZR87_RS00815 at 163.841 kb on - strand, within ABZR87_RS00815 at 163.939 kb on + strand, within ABZR87_RS00815 at 163.940 kb on - strand, within ABZR87_RS00815 at 163.940 kb on - strand, within ABZR87_RS00815 at 163.940 kb on - strand, within ABZR87_RS00815 at 163.952 kb on - strand, within ABZR87_RS00815 at 164.008 kb on + strand, within ABZR87_RS00815 at 164.052 kb on + strand, within ABZR87_RS00815 at 164.053 kb on - strand, within ABZR87_RS00815 at 164.053 kb on - strand, within ABZR87_RS00815 at 164.065 kb on - strand, within ABZR87_RS00815 at 164.295 kb on + strand, within ABZR87_RS00815 at 164.295 kb on + strand, within ABZR87_RS00815 at 164.374 kb on + strand, within ABZR87_RS00815 at 164.375 kb on - strand, within ABZR87_RS00815 at 164.773 kb on + strand, within ABZR87_RS00815 at 164.774 kb on - strand, within ABZR87_RS00815 at 164.774 kb on - strand, within ABZR87_RS00815 at 164.983 kb on + strand, within ABZR87_RS00815 at 164.983 kb on + strand, within ABZR87_RS00815 at 164.984 kb on - strand, within ABZR87_RS00815 at 164.984 kb on - strand, within ABZR87_RS00815 at 165.043 kb on + strand at 165.043 kb on + strand at 165.044 kb on - strand at 165.044 kb on - strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.059 kb on - strand at 165.073 kb on - strand at 165.073 kb on - strand at 165.073 kb on - strand at 165.073 kb on - strand at 165.116 kb on - strand at 165.116 kb on - strand at 165.116 kb on - strand at 165.116 kb on - strand at 165.256 kb on + strand at 165.256 kb on + strand at 165.576 kb on + strand, within ABZR87_RS00820 at 165.576 kb on + strand, within ABZR87_RS00820 at 165.577 kb on - strand, within ABZR87_RS00820 at 165.791 kb on + strand at 165.791 kb on + strand at 165.792 kb on - strand at 165.792 kb on - strand at 165.792 kb on - strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.885 kb on - strand at 165.885 kb on - strand at 165.885 kb on - strand at 165.885 kb on - strand at 165.886 kb on + strand at 165.886 kb on + strand at 165.886 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB remove 162,104 + ABZR87_RS00810 0.40 +2.4 162,104 + ABZR87_RS00810 0.40 +0.3 162,105 - ABZR87_RS00810 0.40 +1.7 162,105 - ABZR87_RS00810 0.40 +0.8 162,373 + ABZR87_RS00810 0.66 -1.6 162,373 + ABZR87_RS00810 0.66 +0.1 162,668 + +0.8 162,668 + +0.4 162,669 - -0.3 162,669 - -1.1 162,721 + +0.6 162,722 - +0.1 162,722 - +0.2 162,722 - -2.7 162,722 - -0.5 162,722 - +0.8 162,722 - -0.4 162,722 - +0.3 162,723 + -1.2 162,723 + +1.5 162,723 + -0.3 162,723 + -1.2 162,724 - -1.8 162,739 + -0.3 162,740 - +1.4 162,740 - -2.3 162,775 + +0.6 162,776 - +0.2 162,844 - +0.4 162,844 - -1.0 163,045 + +0.2 163,046 - +1.8 163,046 - +1.8 163,046 - +0.6 163,072 + -0.2 163,072 + -0.9 163,072 + +1.2 163,073 - -0.2 163,073 - -0.8 163,073 - -0.5 163,079 - -2.4 163,294 + ABZR87_RS00815 0.18 -1.1 163,294 + ABZR87_RS00815 0.18 -0.4 163,294 + ABZR87_RS00815 0.18 -0.1 163,295 - ABZR87_RS00815 0.18 -0.5 163,295 - ABZR87_RS00815 0.18 -0.4 163,306 + ABZR87_RS00815 0.18 +0.6 163,306 + ABZR87_RS00815 0.18 +2.8 163,307 - ABZR87_RS00815 0.18 +0.4 163,315 + ABZR87_RS00815 0.18 +0.2 163,605 + ABZR87_RS00815 0.31 +1.0 163,606 - ABZR87_RS00815 0.31 -1.8 163,666 + ABZR87_RS00815 0.33 +0.5 163,666 + ABZR87_RS00815 0.33 +0.1 163,797 + ABZR87_RS00815 0.39 -1.3 163,797 + ABZR87_RS00815 0.39 -0.1 163,798 - ABZR87_RS00815 0.39 +0.9 163,840 + ABZR87_RS00815 0.41 +1.0 163,840 + ABZR87_RS00815 0.41 +1.0 163,841 - ABZR87_RS00815 0.41 +0.0 163,939 + ABZR87_RS00815 0.45 +2.1 163,940 - ABZR87_RS00815 0.45 +0.1 163,940 - ABZR87_RS00815 0.45 -0.7 163,940 - ABZR87_RS00815 0.45 -1.5 163,952 - ABZR87_RS00815 0.45 -2.6 164,008 + ABZR87_RS00815 0.48 -2.8 164,052 + ABZR87_RS00815 0.49 -0.1 164,053 - ABZR87_RS00815 0.49 -0.4 164,053 - ABZR87_RS00815 0.49 -0.0 164,065 - ABZR87_RS00815 0.50 -1.0 164,295 + ABZR87_RS00815 0.60 +0.3 164,295 + ABZR87_RS00815 0.60 +1.0 164,374 + ABZR87_RS00815 0.63 -2.1 164,375 - ABZR87_RS00815 0.63 -0.4 164,773 + ABZR87_RS00815 0.80 -0.5 164,774 - ABZR87_RS00815 0.80 -2.1 164,774 - ABZR87_RS00815 0.80 +1.0 164,983 + ABZR87_RS00815 0.88 -1.0 164,983 + ABZR87_RS00815 0.88 +0.2 164,984 - ABZR87_RS00815 0.88 +1.1 164,984 - ABZR87_RS00815 0.88 -0.1 165,043 + +1.3 165,043 + -0.9 165,044 - +0.2 165,044 - -0.6 165,058 + -0.8 165,058 + -1.1 165,058 + +1.2 165,058 + +0.7 165,058 + +1.3 165,058 + +1.5 165,058 + +0.3 165,058 + -1.1 165,059 - +1.3 165,073 - +1.9 165,073 - -3.1 165,073 - -2.6 165,073 - -1.2 165,116 - -0.8 165,116 - -0.6 165,116 - -0.5 165,116 - +0.1 165,256 + +0.8 165,256 + +0.0 165,576 + ABZR87_RS00820 0.51 +1.7 165,576 + ABZR87_RS00820 0.51 +0.8 165,577 - ABZR87_RS00820 0.52 +0.2 165,791 + +2.8 165,791 + +0.0 165,792 - -2.5 165,792 - +0.6 165,792 - -1.7 165,884 + -1.0 165,884 + -2.7 165,884 + -0.9 165,884 + +1.4 165,884 + -1.3 165,884 + -1.0 165,885 - +0.5 165,885 - +1.2 165,885 - +0.7 165,885 - +1.0 165,886 + +1.7 165,886 + +0.1 165,886 + +0.9
Or see this region's nucleotide sequence