Experiment: root EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00570 and ABZR87_RS00575 are separated by 497 nucleotides ABZR87_RS00575 and ABZR87_RS00580 are separated by 28 nucleotides ABZR87_RS00580 and ABZR87_RS00585 are separated by 233 nucleotides
ABZR87_RS00570: ABZR87_RS00570 - DMT family transporter, at 117,019 to 117,951
_RS00570
ABZR87_RS00575: ABZR87_RS00575 - HipA N-terminal domain-containing protein, at 118,449 to 119,759
_RS00575
ABZR87_RS00580: ABZR87_RS00580 - hypothetical protein, at 119,788 to 120,063
_RS00580
ABZR87_RS00585: ABZR87_RS00585 - M20 family metallopeptidase, at 120,297 to 121,709
_RS00585
Position (kb) 118
119
120 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 117.500 kb on - strand, within ABZR87_RS00570 at 117.517 kb on + strand, within ABZR87_RS00570 at 117.517 kb on + strand, within ABZR87_RS00570 at 117.518 kb on - strand, within ABZR87_RS00570 at 117.518 kb on - strand, within ABZR87_RS00570 at 117.518 kb on - strand, within ABZR87_RS00570 at 117.518 kb on - strand, within ABZR87_RS00570 at 117.518 kb on - strand, within ABZR87_RS00570 at 117.518 kb on - strand, within ABZR87_RS00570 at 117.607 kb on + strand, within ABZR87_RS00570 at 117.607 kb on + strand, within ABZR87_RS00570 at 117.691 kb on + strand, within ABZR87_RS00570 at 117.691 kb on + strand, within ABZR87_RS00570 at 117.691 kb on + strand, within ABZR87_RS00570 at 117.692 kb on - strand, within ABZR87_RS00570 at 117.692 kb on - strand, within ABZR87_RS00570 at 117.692 kb on - strand, within ABZR87_RS00570 at 117.692 kb on - strand, within ABZR87_RS00570 at 117.692 kb on - strand, within ABZR87_RS00570 at 117.692 kb on - strand, within ABZR87_RS00570 at 118.020 kb on + strand at 118.021 kb on - strand at 118.021 kb on - strand at 118.086 kb on + strand at 118.086 kb on + strand at 118.087 kb on - strand at 118.137 kb on + strand at 118.197 kb on - strand at 118.281 kb on + strand at 118.281 kb on + strand at 118.282 kb on - strand at 118.312 kb on + strand at 118.312 kb on + strand at 118.312 kb on + strand at 118.313 kb on - strand at 118.313 kb on - strand at 118.313 kb on - strand at 118.355 kb on + strand at 118.355 kb on + strand at 118.355 kb on + strand at 118.355 kb on + strand at 118.356 kb on - strand at 118.433 kb on + strand at 118.433 kb on + strand at 118.434 kb on - strand at 118.434 kb on - strand at 118.434 kb on - strand at 118.442 kb on + strand at 118.461 kb on + strand at 118.461 kb on + strand at 118.461 kb on + strand at 118.461 kb on + strand at 118.462 kb on - strand at 118.469 kb on + strand at 118.469 kb on + strand at 118.470 kb on - strand at 118.470 kb on - strand at 118.470 kb on - strand at 118.489 kb on + strand at 118.489 kb on + strand at 118.489 kb on + strand at 118.490 kb on - strand at 118.490 kb on - strand at 118.490 kb on - strand at 118.521 kb on + strand at 118.522 kb on - strand at 118.561 kb on + strand at 118.561 kb on + strand at 118.562 kb on - strand at 118.580 kb on + strand, within ABZR87_RS00575 at 118.580 kb on + strand, within ABZR87_RS00575 at 118.581 kb on - strand, within ABZR87_RS00575 at 118.581 kb on - strand, within ABZR87_RS00575 at 118.581 kb on - strand, within ABZR87_RS00575 at 118.592 kb on + strand, within ABZR87_RS00575 at 118.593 kb on - strand, within ABZR87_RS00575 at 118.638 kb on + strand, within ABZR87_RS00575 at 118.638 kb on + strand, within ABZR87_RS00575 at 118.638 kb on + strand, within ABZR87_RS00575 at 118.638 kb on + strand, within ABZR87_RS00575 at 118.638 kb on + strand, within ABZR87_RS00575 at 118.639 kb on - strand, within ABZR87_RS00575 at 118.639 kb on - strand, within ABZR87_RS00575 at 118.639 kb on - strand, within ABZR87_RS00575 at 118.915 kb on + strand, within ABZR87_RS00575 at 118.916 kb on - strand, within ABZR87_RS00575 at 118.945 kb on + strand, within ABZR87_RS00575 at 118.946 kb on - strand, within ABZR87_RS00575 at 118.946 kb on - strand, within ABZR87_RS00575 at 119.040 kb on + strand, within ABZR87_RS00575 at 119.040 kb on + strand, within ABZR87_RS00575 at 119.040 kb on + strand, within ABZR87_RS00575 at 119.041 kb on - strand, within ABZR87_RS00575 at 119.140 kb on + strand, within ABZR87_RS00575 at 119.141 kb on - strand, within ABZR87_RS00575 at 119.205 kb on + strand, within ABZR87_RS00575 at 119.205 kb on + strand, within ABZR87_RS00575 at 119.205 kb on + strand, within ABZR87_RS00575 at 119.205 kb on + strand, within ABZR87_RS00575 at 119.205 kb on + strand, within ABZR87_RS00575 at 119.206 kb on - strand, within ABZR87_RS00575 at 119.206 kb on - strand, within ABZR87_RS00575 at 119.206 kb on - strand, within ABZR87_RS00575 at 119.206 kb on - strand, within ABZR87_RS00575 at 119.457 kb on + strand, within ABZR87_RS00575 at 119.508 kb on + strand, within ABZR87_RS00575 at 119.508 kb on + strand, within ABZR87_RS00575 at 119.509 kb on - strand, within ABZR87_RS00575 at 119.509 kb on - strand, within ABZR87_RS00575 at 119.559 kb on + strand, within ABZR87_RS00575 at 119.560 kb on - strand, within ABZR87_RS00575 at 119.699 kb on + strand at 119.700 kb on - strand at 119.789 kb on + strand at 119.789 kb on + strand at 119.789 kb on + strand at 119.789 kb on + strand at 119.789 kb on + strand at 119.790 kb on - strand at 119.790 kb on - strand at 119.790 kb on - strand at 119.826 kb on - strand, within ABZR87_RS00580 at 119.826 kb on - strand, within ABZR87_RS00580 at 119.925 kb on - strand, within ABZR87_RS00580 at 119.925 kb on - strand, within ABZR87_RS00580 at 119.925 kb on - strand, within ABZR87_RS00580 at 120.034 kb on + strand, within ABZR87_RS00580 at 120.040 kb on + strand at 120.040 kb on + strand at 120.040 kb on + strand at 120.041 kb on - strand at 120.041 kb on - strand at 120.041 kb on - strand at 120.041 kb on - strand at 120.112 kb on - strand at 120.112 kb on - strand at 120.112 kb on - strand at 120.112 kb on - strand at 120.123 kb on + strand at 120.326 kb on + strand at 120.326 kb on + strand at 120.326 kb on + strand at 120.326 kb on + strand at 120.327 kb on - strand at 120.327 kb on - strand at 120.327 kb on - strand at 120.492 kb on + strand, within ABZR87_RS00585 at 120.492 kb on + strand, within ABZR87_RS00585 at 120.492 kb on + strand, within ABZR87_RS00585 at 120.493 kb on - strand, within ABZR87_RS00585 at 120.493 kb on - strand, within ABZR87_RS00585 at 120.493 kb on - strand, within ABZR87_RS00585 at 120.493 kb on - strand, within ABZR87_RS00585 at 120.493 kb on - strand, within ABZR87_RS00585 at 120.513 kb on + strand, within ABZR87_RS00585 at 120.513 kb on + strand, within ABZR87_RS00585 at 120.513 kb on + strand, within ABZR87_RS00585 at 120.513 kb on + strand, within ABZR87_RS00585 at 120.514 kb on - strand, within ABZR87_RS00585 at 120.514 kb on - strand, within ABZR87_RS00585 at 120.645 kb on + strand, within ABZR87_RS00585 at 120.646 kb on - strand, within ABZR87_RS00585 at 120.726 kb on + strand, within ABZR87_RS00585
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB remove 117,500 - ABZR87_RS00570 0.52 -0.1 117,517 + ABZR87_RS00570 0.53 +0.4 117,517 + ABZR87_RS00570 0.53 +0.6 117,518 - ABZR87_RS00570 0.53 -0.3 117,518 - ABZR87_RS00570 0.53 -1.0 117,518 - ABZR87_RS00570 0.53 +0.3 117,518 - ABZR87_RS00570 0.53 -1.3 117,518 - ABZR87_RS00570 0.53 -0.1 117,518 - ABZR87_RS00570 0.53 +0.8 117,607 + ABZR87_RS00570 0.63 +0.3 117,607 + ABZR87_RS00570 0.63 +1.1 117,691 + ABZR87_RS00570 0.72 -2.3 117,691 + ABZR87_RS00570 0.72 +1.5 117,691 + ABZR87_RS00570 0.72 +1.1 117,692 - ABZR87_RS00570 0.72 -1.9 117,692 - ABZR87_RS00570 0.72 -0.8 117,692 - ABZR87_RS00570 0.72 +0.9 117,692 - ABZR87_RS00570 0.72 -2.5 117,692 - ABZR87_RS00570 0.72 +0.2 117,692 - ABZR87_RS00570 0.72 -1.4 118,020 + -0.1 118,021 - -0.1 118,021 - +0.7 118,086 + +0.0 118,086 + -0.9 118,087 - -0.7 118,137 + -0.0 118,197 - +1.1 118,281 + -0.1 118,281 + +0.8 118,282 - +2.0 118,312 + -0.6 118,312 + +1.2 118,312 + -0.2 118,313 - +1.1 118,313 - +0.6 118,313 - +0.7 118,355 + -1.1 118,355 + +1.3 118,355 + +1.0 118,355 + -0.4 118,356 - +0.9 118,433 + +1.4 118,433 + +1.8 118,434 - -0.0 118,434 - +1.9 118,434 - +0.5 118,442 + +0.1 118,461 + +0.4 118,461 + +1.1 118,461 + +0.8 118,461 + +1.9 118,462 - -0.6 118,469 + +0.0 118,469 + +3.0 118,470 - +2.1 118,470 - +1.0 118,470 - +2.1 118,489 + +1.1 118,489 + +1.0 118,489 + +1.4 118,490 - +0.4 118,490 - +1.3 118,490 - +1.6 118,521 + +1.0 118,522 - +1.5 118,561 + +1.1 118,561 + -0.3 118,562 - +2.1 118,580 + ABZR87_RS00575 0.10 +1.5 118,580 + ABZR87_RS00575 0.10 +1.1 118,581 - ABZR87_RS00575 0.10 -0.5 118,581 - ABZR87_RS00575 0.10 +0.6 118,581 - ABZR87_RS00575 0.10 +1.5 118,592 + ABZR87_RS00575 0.11 +0.6 118,593 - ABZR87_RS00575 0.11 +0.9 118,638 + ABZR87_RS00575 0.14 +0.7 118,638 + ABZR87_RS00575 0.14 +1.0 118,638 + ABZR87_RS00575 0.14 -0.4 118,638 + ABZR87_RS00575 0.14 +4.2 118,638 + ABZR87_RS00575 0.14 +0.6 118,639 - ABZR87_RS00575 0.14 +1.7 118,639 - ABZR87_RS00575 0.14 +1.8 118,639 - ABZR87_RS00575 0.14 +1.2 118,915 + ABZR87_RS00575 0.36 +0.8 118,916 - ABZR87_RS00575 0.36 +1.2 118,945 + ABZR87_RS00575 0.38 +1.0 118,946 - ABZR87_RS00575 0.38 +1.2 118,946 - ABZR87_RS00575 0.38 +1.6 119,040 + ABZR87_RS00575 0.45 +1.2 119,040 + ABZR87_RS00575 0.45 +0.8 119,040 + ABZR87_RS00575 0.45 +1.3 119,041 - ABZR87_RS00575 0.45 +3.3 119,140 + ABZR87_RS00575 0.53 +3.8 119,141 - ABZR87_RS00575 0.53 +1.8 119,205 + ABZR87_RS00575 0.58 +4.5 119,205 + ABZR87_RS00575 0.58 +0.5 119,205 + ABZR87_RS00575 0.58 +1.0 119,205 + ABZR87_RS00575 0.58 +0.6 119,205 + ABZR87_RS00575 0.58 +0.7 119,206 - ABZR87_RS00575 0.58 -0.0 119,206 - ABZR87_RS00575 0.58 +1.0 119,206 - ABZR87_RS00575 0.58 +0.6 119,206 - ABZR87_RS00575 0.58 +0.4 119,457 + ABZR87_RS00575 0.77 +1.9 119,508 + ABZR87_RS00575 0.81 -2.1 119,508 + ABZR87_RS00575 0.81 +0.7 119,509 - ABZR87_RS00575 0.81 +1.9 119,509 - ABZR87_RS00575 0.81 +0.4 119,559 + ABZR87_RS00575 0.85 +0.6 119,560 - ABZR87_RS00575 0.85 +0.7 119,699 + +1.0 119,700 - +0.6 119,789 + -0.4 119,789 + +1.0 119,789 + -2.1 119,789 + +0.9 119,789 + -0.6 119,790 - -0.1 119,790 - -0.4 119,790 - +0.9 119,826 - ABZR87_RS00580 0.14 -1.0 119,826 - ABZR87_RS00580 0.14 -0.6 119,925 - ABZR87_RS00580 0.50 +0.2 119,925 - ABZR87_RS00580 0.50 +0.2 119,925 - ABZR87_RS00580 0.50 -1.2 120,034 + ABZR87_RS00580 0.89 +3.7 120,040 + -0.5 120,040 + -0.1 120,040 + -1.7 120,041 - -0.7 120,041 - -0.6 120,041 - -1.3 120,041 - -0.3 120,112 - -0.3 120,112 - -0.4 120,112 - -2.7 120,112 - +0.1 120,123 + -0.2 120,326 + -0.4 120,326 + +0.8 120,326 + +0.1 120,326 + -0.8 120,327 - -2.3 120,327 - +0.4 120,327 - +0.5 120,492 + ABZR87_RS00585 0.14 +0.1 120,492 + ABZR87_RS00585 0.14 -0.2 120,492 + ABZR87_RS00585 0.14 +0.9 120,493 - ABZR87_RS00585 0.14 -0.3 120,493 - ABZR87_RS00585 0.14 +0.1 120,493 - ABZR87_RS00585 0.14 +0.2 120,493 - ABZR87_RS00585 0.14 -0.6 120,493 - ABZR87_RS00585 0.14 -0.9 120,513 + ABZR87_RS00585 0.15 +1.0 120,513 + ABZR87_RS00585 0.15 -0.0 120,513 + ABZR87_RS00585 0.15 +1.0 120,513 + ABZR87_RS00585 0.15 -0.1 120,514 - ABZR87_RS00585 0.15 +0.4 120,514 - ABZR87_RS00585 0.15 +0.2 120,645 + ABZR87_RS00585 0.25 -2.3 120,646 - ABZR87_RS00585 0.25 +0.2 120,726 + ABZR87_RS00585 0.30 +0.7
Or see this region's nucleotide sequence