Experiment: Choline chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0353 and Shew_0354 are separated by 54 nucleotides Shew_0354 and Shew_0355 are separated by 10 nucleotides Shew_0355 and Shew_0356 overlap by 4 nucleotides Shew_0356 and Shew_0357 overlap by 4 nucleotides
Shew_0353: Shew_0353 - polysulphide reductase, NrfD (RefSeq), at 401,714 to 402,661
_0353
Shew_0354: Shew_0354 - NosL family protein (RefSeq), at 402,716 to 403,204
_0354
Shew_0355: Shew_0355 - periplasmic copper-binding (RefSeq), at 403,215 to 404,573
_0355
Shew_0356: Shew_0356 - ABC transporter-related protein (RefSeq), at 404,570 to 405,499
_0356
Shew_0357: Shew_0357 - copper ABC transporter, permease protein (RefSeq), at 405,496 to 406,347
_0357
Position (kb) 403
404
405 Strain fitness (log2 ratio) -1
0
1 at 402.632 kb on - strand at 402.641 kb on + strand at 402.702 kb on + strand at 402.780 kb on + strand, within Shew_0354 at 403.124 kb on + strand, within Shew_0354 at 403.130 kb on - strand, within Shew_0354 at 403.149 kb on - strand, within Shew_0354 at 403.173 kb on + strand at 403.187 kb on - strand at 403.288 kb on + strand at 403.432 kb on - strand, within Shew_0355 at 403.456 kb on + strand, within Shew_0355 at 403.921 kb on - strand, within Shew_0355 at 404.277 kb on + strand, within Shew_0355 at 404.416 kb on + strand, within Shew_0355 at 404.597 kb on - strand at 404.721 kb on + strand, within Shew_0356 at 404.744 kb on - strand, within Shew_0356 at 404.853 kb on + strand, within Shew_0356 at 404.853 kb on + strand, within Shew_0356 at 404.861 kb on + strand, within Shew_0356 at 404.861 kb on - strand, within Shew_0356 at 404.861 kb on + strand, within Shew_0356 at 404.965 kb on - strand, within Shew_0356 at 405.017 kb on - strand, within Shew_0356 at 405.019 kb on + strand, within Shew_0356 at 405.022 kb on - strand, within Shew_0356 at 405.141 kb on + strand, within Shew_0356 at 405.149 kb on - strand, within Shew_0356 at 405.175 kb on - strand, within Shew_0356 at 405.175 kb on - strand, within Shew_0356 at 405.190 kb on + strand, within Shew_0356 at 405.213 kb on + strand, within Shew_0356 at 405.418 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 200 mM remove 402,632 - +0.1 402,641 + +0.2 402,702 + -0.0 402,780 + Shew_0354 0.13 -0.3 403,124 + Shew_0354 0.83 -0.0 403,130 - Shew_0354 0.85 -0.2 403,149 - Shew_0354 0.89 -0.2 403,173 + +0.1 403,187 - -0.2 403,288 + +0.0 403,432 - Shew_0355 0.16 -0.4 403,456 + Shew_0355 0.18 -0.2 403,921 - Shew_0355 0.52 +0.4 404,277 + Shew_0355 0.78 -0.3 404,416 + Shew_0355 0.88 -0.1 404,597 - +1.2 404,721 + Shew_0356 0.16 -0.2 404,744 - Shew_0356 0.19 +0.3 404,853 + Shew_0356 0.30 -0.1 404,853 + Shew_0356 0.30 +0.1 404,861 + Shew_0356 0.31 -0.4 404,861 - Shew_0356 0.31 +0.4 404,861 + Shew_0356 0.31 -0.1 404,965 - Shew_0356 0.42 -0.7 405,017 - Shew_0356 0.48 +0.1 405,019 + Shew_0356 0.48 +0.3 405,022 - Shew_0356 0.49 +0.1 405,141 + Shew_0356 0.61 -0.5 405,149 - Shew_0356 0.62 -0.1 405,175 - Shew_0356 0.65 -1.5 405,175 - Shew_0356 0.65 -0.1 405,190 + Shew_0356 0.67 -0.3 405,213 + Shew_0356 0.69 +0.1 405,418 + +0.1
Or see this region's nucleotide sequence