Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3820 and Dshi_3821 are separated by 1 nucleotides Dshi_3821 and Dshi_3822 are separated by 12 nucleotides Dshi_3822 and Dshi_3823 are separated by 7 nucleotides Dshi_3823 and Dshi_3824 are separated by 2 nucleotides
Dshi_3820: Dshi_3820 - phenylacetate-CoA oxygenase, PaaI subunit (RefSeq), at 27,542 to 28,309
_3820
Dshi_3821: Dshi_3821 - phenylacetate-CoA oxygenase, PaaJ subunit (RefSeq), at 28,311 to 28,769
_3821
Dshi_3822: Dshi_3822 - phenylacetate-CoA oxygenase/reductase, PaaK subunit (RefSeq), at 28,782 to 29,852
_3822
Dshi_3823: Dshi_3823 - transcriptional regulator, TetR family (RefSeq), at 29,860 to 30,456
_3823
Dshi_3824: Dshi_3824 - phenylacetate-CoA ligase (RefSeq), at 30,459 to 31,769
_3824
Position (kb)
28
29
30 Strain fitness (log2 ratio)
-2
-1
0
1 at 27.814 kb on + strand, within Dshi_3820 at 27.892 kb on + strand, within Dshi_3820 at 27.955 kb on - strand, within Dshi_3820 at 27.966 kb on - strand, within Dshi_3820 at 28.055 kb on - strand, within Dshi_3820 at 28.163 kb on + strand, within Dshi_3820 at 28.213 kb on - strand, within Dshi_3820 at 28.318 kb on - strand at 28.501 kb on - strand, within Dshi_3821 at 28.513 kb on + strand, within Dshi_3821 at 28.701 kb on + strand, within Dshi_3821 at 28.743 kb on - strand at 28.845 kb on - strand at 28.934 kb on + strand, within Dshi_3822 at 28.939 kb on + strand, within Dshi_3822 at 29.005 kb on - strand, within Dshi_3822 at 29.031 kb on - strand, within Dshi_3822 at 29.088 kb on - strand, within Dshi_3822 at 29.091 kb on + strand, within Dshi_3822 at 29.171 kb on - strand, within Dshi_3822 at 29.210 kb on + strand, within Dshi_3822 at 29.210 kb on + strand, within Dshi_3822 at 29.218 kb on - strand, within Dshi_3822 at 29.218 kb on - strand, within Dshi_3822 at 29.236 kb on + strand, within Dshi_3822 at 29.420 kb on - strand, within Dshi_3822 at 29.565 kb on + strand, within Dshi_3822 at 29.617 kb on + strand, within Dshi_3822 at 29.666 kb on - strand, within Dshi_3822 at 29.710 kb on - strand, within Dshi_3822 at 29.739 kb on + strand, within Dshi_3822 at 29.815 kb on - strand at 30.060 kb on - strand, within Dshi_3823 at 30.065 kb on - strand, within Dshi_3823 at 30.156 kb on + strand, within Dshi_3823 at 30.171 kb on + strand, within Dshi_3823 at 30.179 kb on + strand, within Dshi_3823 at 30.179 kb on - strand, within Dshi_3823 at 30.212 kb on + strand, within Dshi_3823 at 30.259 kb on - strand, within Dshi_3823 at 30.263 kb on + strand, within Dshi_3823 at 30.493 kb on + strand at 30.493 kb on + strand at 30.559 kb on - strand at 30.569 kb on - strand at 30.719 kb on + strand, within Dshi_3824 at 30.740 kb on + strand, within Dshi_3824 at 30.825 kb on + strand, within Dshi_3824
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 27,814 + Dshi_3820 0.35 +0.6 27,892 + Dshi_3820 0.46 -0.3 27,955 - Dshi_3820 0.54 -0.3 27,966 - Dshi_3820 0.55 -0.4 28,055 - Dshi_3820 0.67 +0.3 28,163 + Dshi_3820 0.81 +0.4 28,213 - Dshi_3820 0.87 -0.9 28,318 - -0.2 28,501 - Dshi_3821 0.41 +0.4 28,513 + Dshi_3821 0.44 -0.2 28,701 + Dshi_3821 0.85 -0.4 28,743 - +1.1 28,845 - +0.6 28,934 + Dshi_3822 0.14 -0.5 28,939 + Dshi_3822 0.15 -0.4 29,005 - Dshi_3822 0.21 -0.3 29,031 - Dshi_3822 0.23 -0.6 29,088 - Dshi_3822 0.29 -1.5 29,091 + Dshi_3822 0.29 -0.2 29,171 - Dshi_3822 0.36 -1.3 29,210 + Dshi_3822 0.40 +0.4 29,210 + Dshi_3822 0.40 +0.4 29,218 - Dshi_3822 0.41 -0.2 29,218 - Dshi_3822 0.41 -1.2 29,236 + Dshi_3822 0.42 -0.1 29,420 - Dshi_3822 0.60 +0.8 29,565 + Dshi_3822 0.73 +0.3 29,617 + Dshi_3822 0.78 -0.0 29,666 - Dshi_3822 0.83 -1.3 29,710 - Dshi_3822 0.87 -0.6 29,739 + Dshi_3822 0.89 -0.9 29,815 - -0.8 30,060 - Dshi_3823 0.34 +0.2 30,065 - Dshi_3823 0.34 +0.1 30,156 + Dshi_3823 0.50 +0.0 30,171 + Dshi_3823 0.52 -0.6 30,179 + Dshi_3823 0.53 +0.0 30,179 - Dshi_3823 0.53 +0.2 30,212 + Dshi_3823 0.59 -1.8 30,259 - Dshi_3823 0.67 -0.0 30,263 + Dshi_3823 0.68 -1.2 30,493 + -0.6 30,493 + -0.1 30,559 - +0.2 30,569 - -0.4 30,719 + Dshi_3824 0.20 -0.8 30,740 + Dshi_3824 0.21 +1.0 30,825 + Dshi_3824 0.28 -1.1
Or see this region's nucleotide sequence