Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3375

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_3374 and Dshi_3375 are separated by 6 nucleotidesDshi_3375 and Dshi_3376 overlap by 4 nucleotides Dshi_3374: Dshi_3374 - DNA polymerase III, beta subunit (RefSeq), at 3,546,223 to 3,547,341 _3374 Dshi_3375: Dshi_3375 - SMC domain protein (RefSeq), at 3,547,348 to 3,548,433 _3375 Dshi_3376: Dshi_3376 - flagellar P-ring protein (RefSeq), at 3,548,430 to 3,549,533 _3376 Position (kb) 3547 3548 3549Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3547.335 kb on + strandat 3547.371 kb on - strandat 3547.397 kb on + strandat 3547.410 kb on - strandat 3547.440 kb on + strandat 3547.542 kb on + strand, within Dshi_3375at 3547.706 kb on - strand, within Dshi_3375at 3547.714 kb on + strand, within Dshi_3375at 3547.714 kb on + strand, within Dshi_3375at 3547.722 kb on - strand, within Dshi_3375at 3547.722 kb on - strand, within Dshi_3375at 3547.741 kb on + strand, within Dshi_3375at 3547.759 kb on + strand, within Dshi_3375at 3547.963 kb on + strand, within Dshi_3375at 3547.963 kb on + strand, within Dshi_3375at 3547.963 kb on + strand, within Dshi_3375at 3547.971 kb on + strand, within Dshi_3375at 3547.971 kb on - strand, within Dshi_3375at 3547.971 kb on - strand, within Dshi_3375at 3548.037 kb on - strand, within Dshi_3375at 3548.099 kb on + strand, within Dshi_3375at 3548.099 kb on + strand, within Dshi_3375at 3548.107 kb on - strand, within Dshi_3375at 3548.107 kb on - strand, within Dshi_3375at 3548.154 kb on + strand, within Dshi_3375at 3548.154 kb on + strand, within Dshi_3375at 3548.162 kb on - strand, within Dshi_3375at 3548.162 kb on - strand, within Dshi_3375at 3548.162 kb on - strand, within Dshi_3375at 3548.169 kb on + strand, within Dshi_3375at 3548.172 kb on - strand, within Dshi_3375at 3548.207 kb on + strand, within Dshi_3375at 3548.261 kb on + strand, within Dshi_3375at 3548.341 kb on + strandat 3548.476 kb on + strandat 3548.519 kb on - strandat 3548.520 kb on + strandat 3548.520 kb on - strandat 3548.555 kb on - strand, within Dshi_3376at 3548.557 kb on + strand, within Dshi_3376at 3548.558 kb on + strand, within Dshi_3376at 3548.565 kb on - strand, within Dshi_3376at 3548.565 kb on - strand, within Dshi_3376at 3548.575 kb on - strand, within Dshi_3376at 3548.606 kb on - strand, within Dshi_3376at 3548.644 kb on + strand, within Dshi_3376at 3548.652 kb on - strand, within Dshi_3376at 3548.721 kb on - strand, within Dshi_3376at 3548.721 kb on - strand, within Dshi_3376at 3548.721 kb on - strand, within Dshi_3376at 3548.772 kb on - strand, within Dshi_3376at 3548.781 kb on + strand, within Dshi_3376at 3548.783 kb on + strand, within Dshi_3376at 3548.783 kb on + strand, within Dshi_3376at 3548.783 kb on + strand, within Dshi_3376at 3548.845 kb on + strand, within Dshi_3376at 3548.853 kb on - strand, within Dshi_3376at 3548.931 kb on - strand, within Dshi_3376at 3548.982 kb on - strand, within Dshi_3376at 3548.987 kb on - strand, within Dshi_3376at 3549.000 kb on + strand, within Dshi_3376at 3549.013 kb on - strand, within Dshi_3376at 3549.019 kb on - strand, within Dshi_3376at 3549.020 kb on - strand, within Dshi_3376at 3549.031 kb on - strand, within Dshi_3376at 3549.112 kb on + strand, within Dshi_3376at 3549.132 kb on - strand, within Dshi_3376at 3549.204 kb on + strand, within Dshi_3376at 3549.237 kb on + strand, within Dshi_3376at 3549.251 kb on - strand, within Dshi_3376at 3549.251 kb on - strand, within Dshi_3376at 3549.308 kb on + strand, within Dshi_3376at 3549.413 kb on - strand, within Dshi_3376

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
3,547,335 + -3.8
3,547,371 - -1.4
3,547,397 + -2.8
3,547,410 - -0.1
3,547,440 + -1.4
3,547,542 + Dshi_3375 0.18 +0.9
3,547,706 - Dshi_3375 0.33 -3.6
3,547,714 + Dshi_3375 0.34 -2.9
3,547,714 + Dshi_3375 0.34 -2.4
3,547,722 - Dshi_3375 0.34 -1.1
3,547,722 - Dshi_3375 0.34 -1.6
3,547,741 + Dshi_3375 0.36 -1.4
3,547,759 + Dshi_3375 0.38 -1.9
3,547,963 + Dshi_3375 0.57 -1.4
3,547,963 + Dshi_3375 0.57 -1.6
3,547,963 + Dshi_3375 0.57 -0.6
3,547,971 + Dshi_3375 0.57 -3.1
3,547,971 - Dshi_3375 0.57 -1.9
3,547,971 - Dshi_3375 0.57 -1.9
3,548,037 - Dshi_3375 0.63 -1.9
3,548,099 + Dshi_3375 0.69 -3.0
3,548,099 + Dshi_3375 0.69 -2.1
3,548,107 - Dshi_3375 0.70 -3.0
3,548,107 - Dshi_3375 0.70 -3.2
3,548,154 + Dshi_3375 0.74 -0.6
3,548,154 + Dshi_3375 0.74 -3.3
3,548,162 - Dshi_3375 0.75 -1.4
3,548,162 - Dshi_3375 0.75 -3.2
3,548,162 - Dshi_3375 0.75 -1.1
3,548,169 + Dshi_3375 0.76 -1.9
3,548,172 - Dshi_3375 0.76 -1.1
3,548,207 + Dshi_3375 0.79 -0.6
3,548,261 + Dshi_3375 0.84 -4.5
3,548,341 + -1.4
3,548,476 + +0.2
3,548,519 - -1.6
3,548,520 + -0.4
3,548,520 - +0.0
3,548,555 - Dshi_3376 0.11 -0.1
3,548,557 + Dshi_3376 0.12 -0.9
3,548,558 + Dshi_3376 0.12 +0.6
3,548,565 - Dshi_3376 0.12 -1.8
3,548,565 - Dshi_3376 0.12 +0.2
3,548,575 - Dshi_3376 0.13 -0.2
3,548,606 - Dshi_3376 0.16 -1.2
3,548,644 + Dshi_3376 0.19 -1.9
3,548,652 - Dshi_3376 0.20 +0.0
3,548,721 - Dshi_3376 0.26 +1.7
3,548,721 - Dshi_3376 0.26 -0.3
3,548,721 - Dshi_3376 0.26 +1.9
3,548,772 - Dshi_3376 0.31 +0.4
3,548,781 + Dshi_3376 0.32 -0.1
3,548,783 + Dshi_3376 0.32 +0.9
3,548,783 + Dshi_3376 0.32 +0.9
3,548,783 + Dshi_3376 0.32 -1.6
3,548,845 + Dshi_3376 0.38 -0.0
3,548,853 - Dshi_3376 0.38 -0.2
3,548,931 - Dshi_3376 0.45 -0.6
3,548,982 - Dshi_3376 0.50 -0.5
3,548,987 - Dshi_3376 0.50 -2.5
3,549,000 + Dshi_3376 0.52 +0.2
3,549,013 - Dshi_3376 0.53 -1.1
3,549,019 - Dshi_3376 0.53 +0.8
3,549,020 - Dshi_3376 0.53 +0.6
3,549,031 - Dshi_3376 0.54 +0.4
3,549,112 + Dshi_3376 0.62 +0.4
3,549,132 - Dshi_3376 0.64 +0.2
3,549,204 + Dshi_3376 0.70 +0.6
3,549,237 + Dshi_3376 0.73 +0.3
3,549,251 - Dshi_3376 0.74 -0.3
3,549,251 - Dshi_3376 0.74 -1.6
3,549,308 + Dshi_3376 0.80 -0.8
3,549,413 - Dshi_3376 0.89 +0.0

Or see this region's nucleotide sequence