Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3058 and Dshi_3059 are separated by 3 nucleotides Dshi_3059 and Dshi_3060 are separated by 78 nucleotides Dshi_3060 and Dshi_3061 are separated by 151 nucleotides Dshi_3061 and Dshi_3062 overlap by 4 nucleotides
Dshi_3058: Dshi_3058 - hypothetical protein (RefSeq), at 3,225,943 to 3,228,627
_3058
Dshi_3059: Dshi_3059 - diaminopimelate decarboxylase (RefSeq), at 3,228,631 to 3,229,926
_3059
Dshi_3060: Dshi_3060 - hypothetical protein (RefSeq), at 3,230,005 to 3,230,340
_3060
Dshi_3061: Dshi_3061 - hypothetical protein (RefSeq), at 3,230,492 to 3,230,662
_3061
Dshi_3062: Dshi_3062 - argininosuccinate lyase (RefSeq), at 3,230,659 to 3,232,050
_3062
Position (kb)
3228
3229
3230 Strain fitness (log2 ratio)
-1
0
1
2 at 3227.685 kb on - strand, within Dshi_3058 at 3227.768 kb on - strand, within Dshi_3058 at 3227.943 kb on - strand, within Dshi_3058 at 3228.014 kb on - strand, within Dshi_3058 at 3228.128 kb on - strand, within Dshi_3058 at 3228.138 kb on - strand, within Dshi_3058 at 3228.219 kb on - strand, within Dshi_3058 at 3228.293 kb on - strand, within Dshi_3058 at 3228.312 kb on - strand, within Dshi_3058 at 3228.362 kb on - strand at 3228.557 kb on - strand at 3228.574 kb on + strand at 3228.611 kb on + strand at 3228.629 kb on + strand at 3228.629 kb on + strand at 3228.654 kb on + strand at 3230.181 kb on + strand, within Dshi_3060 at 3230.316 kb on + strand at 3230.324 kb on - strand at 3230.478 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 3,227,685 - Dshi_3058 0.65 +0.4 3,227,768 - Dshi_3058 0.68 -0.1 3,227,943 - Dshi_3058 0.74 -0.4 3,228,014 - Dshi_3058 0.77 +0.7 3,228,128 - Dshi_3058 0.81 +0.2 3,228,138 - Dshi_3058 0.82 +0.4 3,228,219 - Dshi_3058 0.85 -0.8 3,228,293 - Dshi_3058 0.88 -0.6 3,228,312 - Dshi_3058 0.88 +0.5 3,228,362 - -0.5 3,228,557 - +0.9 3,228,574 + +2.0 3,228,611 + +1.0 3,228,629 + +0.1 3,228,629 + -1.3 3,228,654 + +1.3 3,230,181 + Dshi_3060 0.52 -1.3 3,230,316 + -0.0 3,230,324 - -0.7 3,230,478 + +0.8
Or see this region's nucleotide sequence