Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2980

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2978 and Dshi_2979 are separated by 117 nucleotidesDshi_2979 and Dshi_2980 overlap by 4 nucleotidesDshi_2980 and Dshi_2981 are separated by 175 nucleotides Dshi_2978: Dshi_2978 - RNA polymerase, sigma 32 subunit, RpoH (RefSeq), at 3,145,214 to 3,146,095 _2978 Dshi_2979: Dshi_2979 - Adenosylcobinamide-phosphateguanylyltransferase (RefSeq), at 3,146,213 to 3,146,737 _2979 Dshi_2980: Dshi_2980 - Phosphoglycerate mutase (RefSeq), at 3,146,734 to 3,147,306 _2980 Dshi_2981: Dshi_2981 - Sulfite oxidase (RefSeq), at 3,147,482 to 3,148,744 _2981 Position (kb) 3146 3147 3148Strain fitness (log2 ratio) -2 -1 0 1at 3145.738 kb on - strand, within Dshi_2978at 3145.739 kb on + strand, within Dshi_2978at 3145.780 kb on - strand, within Dshi_2978at 3145.801 kb on - strand, within Dshi_2978at 3145.807 kb on + strand, within Dshi_2978at 3145.851 kb on + strand, within Dshi_2978at 3145.859 kb on - strand, within Dshi_2978at 3145.859 kb on - strand, within Dshi_2978at 3145.862 kb on + strand, within Dshi_2978at 3145.862 kb on + strand, within Dshi_2978at 3145.862 kb on + strand, within Dshi_2978at 3145.862 kb on + strand, within Dshi_2978at 3145.864 kb on - strand, within Dshi_2978at 3145.870 kb on - strand, within Dshi_2978at 3145.870 kb on - strand, within Dshi_2978at 3145.870 kb on - strand, within Dshi_2978at 3145.870 kb on - strand, within Dshi_2978at 3145.870 kb on - strand, within Dshi_2978at 3145.870 kb on - strand, within Dshi_2978at 3145.870 kb on - strand, within Dshi_2978at 3145.870 kb on - strand, within Dshi_2978at 3145.884 kb on + strand, within Dshi_2978at 3145.955 kb on + strand, within Dshi_2978at 3145.967 kb on - strand, within Dshi_2978at 3145.972 kb on - strand, within Dshi_2978at 3145.972 kb on - strand, within Dshi_2978at 3145.972 kb on - strand, within Dshi_2978at 3145.997 kb on + strand, within Dshi_2978at 3145.998 kb on + strand, within Dshi_2978at 3146.000 kb on - strand, within Dshi_2978at 3146.002 kb on + strand, within Dshi_2978at 3146.003 kb on + strand, within Dshi_2978at 3146.005 kb on - strand, within Dshi_2978at 3146.005 kb on - strand, within Dshi_2978at 3146.006 kb on - strand, within Dshi_2978at 3146.009 kb on + strandat 3146.012 kb on + strandat 3146.074 kb on - strandat 3146.095 kb on + strandat 3146.112 kb on - strandat 3146.137 kb on + strandat 3146.141 kb on + strandat 3146.144 kb on - strandat 3146.164 kb on - strandat 3146.740 kb on - strandat 3146.744 kb on - strandat 3146.751 kb on - strandat 3147.381 kb on + strandat 3147.507 kb on - strandat 3147.578 kb on - strandat 3147.578 kb on - strandat 3147.583 kb on - strandat 3147.753 kb on - strand, within Dshi_2981at 3147.828 kb on - strand, within Dshi_2981at 3147.899 kb on + strand, within Dshi_2981at 3147.907 kb on - strand, within Dshi_2981at 3147.914 kb on - strand, within Dshi_2981at 3148.054 kb on + strand, within Dshi_2981at 3148.063 kb on + strand, within Dshi_2981at 3148.184 kb on - strand, within Dshi_2981

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
3,145,738 - Dshi_2978 0.59 -0.4
3,145,739 + Dshi_2978 0.60 -0.0
3,145,780 - Dshi_2978 0.64 +0.4
3,145,801 - Dshi_2978 0.67 -0.4
3,145,807 + Dshi_2978 0.67 -2.6
3,145,851 + Dshi_2978 0.72 -0.7
3,145,859 - Dshi_2978 0.73 -0.1
3,145,859 - Dshi_2978 0.73 +1.0
3,145,862 + Dshi_2978 0.73 +0.3
3,145,862 + Dshi_2978 0.73 -0.0
3,145,862 + Dshi_2978 0.73 +1.0
3,145,862 + Dshi_2978 0.73 -0.4
3,145,864 - Dshi_2978 0.74 -0.2
3,145,870 - Dshi_2978 0.74 -0.0
3,145,870 - Dshi_2978 0.74 -0.8
3,145,870 - Dshi_2978 0.74 -1.0
3,145,870 - Dshi_2978 0.74 -0.5
3,145,870 - Dshi_2978 0.74 +1.0
3,145,870 - Dshi_2978 0.74 -1.0
3,145,870 - Dshi_2978 0.74 -0.2
3,145,870 - Dshi_2978 0.74 -0.5
3,145,884 + Dshi_2978 0.76 -0.1
3,145,955 + Dshi_2978 0.84 +0.1
3,145,967 - Dshi_2978 0.85 +0.0
3,145,972 - Dshi_2978 0.86 +0.6
3,145,972 - Dshi_2978 0.86 -0.4
3,145,972 - Dshi_2978 0.86 +0.6
3,145,997 + Dshi_2978 0.89 -0.7
3,145,998 + Dshi_2978 0.89 +0.2
3,146,000 - Dshi_2978 0.89 -0.7
3,146,002 + Dshi_2978 0.89 -0.2
3,146,003 + Dshi_2978 0.89 -0.5
3,146,005 - Dshi_2978 0.90 -0.1
3,146,005 - Dshi_2978 0.90 -0.7
3,146,006 - Dshi_2978 0.90 -1.0
3,146,009 + -0.3
3,146,012 + -0.2
3,146,074 - -0.6
3,146,095 + +0.7
3,146,112 - -1.0
3,146,137 + -0.3
3,146,141 + -0.3
3,146,144 - -0.3
3,146,164 - -2.3
3,146,740 - -0.6
3,146,744 - +0.2
3,146,751 - +0.2
3,147,381 + +0.5
3,147,507 - -0.2
3,147,578 - -0.1
3,147,578 - -1.6
3,147,583 - +0.3
3,147,753 - Dshi_2981 0.21 -0.1
3,147,828 - Dshi_2981 0.27 +0.2
3,147,899 + Dshi_2981 0.33 +0.7
3,147,907 - Dshi_2981 0.34 +1.0
3,147,914 - Dshi_2981 0.34 +0.4
3,148,054 + Dshi_2981 0.45 +0.1
3,148,063 + Dshi_2981 0.46 +1.7
3,148,184 - Dshi_2981 0.56 -0.0

Or see this region's nucleotide sequence