Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2376

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2374 and Dshi_2375 are separated by 96 nucleotidesDshi_2375 and Dshi_2376 are separated by 24 nucleotidesDshi_2376 and Dshi_2377 are separated by 128 nucleotides Dshi_2374: Dshi_2374 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,507,462 to 2,508,685 _2374 Dshi_2375: Dshi_2375 - protein of unknown function DUF1194 (RefSeq), at 2,508,782 to 2,509,588 _2375 Dshi_2376: Dshi_2376 - hypothetical protein (RefSeq), at 2,509,613 to 2,510,089 _2376 Dshi_2377: Dshi_2377 - protein of unknown function DUF839 (RefSeq), at 2,510,218 to 2,512,242 _2377 Position (kb) 2509 2510 2511Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2508.660 kb on - strandat 2508.702 kb on - strandat 2508.747 kb on - strandat 2508.837 kb on - strandat 2508.851 kb on - strandat 2508.966 kb on - strand, within Dshi_2375at 2508.995 kb on + strand, within Dshi_2375at 2509.003 kb on - strand, within Dshi_2375at 2509.192 kb on + strand, within Dshi_2375at 2509.198 kb on - strand, within Dshi_2375at 2509.246 kb on + strand, within Dshi_2375at 2509.369 kb on - strand, within Dshi_2375at 2509.400 kb on + strand, within Dshi_2375at 2509.601 kb on + strandat 2509.617 kb on - strandat 2509.691 kb on + strand, within Dshi_2376at 2509.709 kb on - strand, within Dshi_2376at 2509.745 kb on - strand, within Dshi_2376at 2509.774 kb on + strand, within Dshi_2376at 2509.774 kb on + strand, within Dshi_2376at 2509.817 kb on - strand, within Dshi_2376at 2509.869 kb on - strand, within Dshi_2376at 2509.942 kb on + strand, within Dshi_2376at 2510.059 kb on + strandat 2510.099 kb on - strandat 2510.109 kb on - strandat 2510.269 kb on - strandat 2510.277 kb on + strandat 2510.360 kb on - strandat 2510.439 kb on + strand, within Dshi_2377at 2510.447 kb on - strand, within Dshi_2377at 2510.447 kb on - strand, within Dshi_2377at 2510.468 kb on - strand, within Dshi_2377at 2510.471 kb on - strand, within Dshi_2377at 2510.539 kb on + strand, within Dshi_2377at 2510.681 kb on - strand, within Dshi_2377at 2510.717 kb on - strand, within Dshi_2377at 2510.722 kb on + strand, within Dshi_2377at 2510.774 kb on + strand, within Dshi_2377at 2510.782 kb on - strand, within Dshi_2377at 2510.784 kb on + strand, within Dshi_2377at 2510.792 kb on - strand, within Dshi_2377at 2510.792 kb on - strand, within Dshi_2377at 2510.812 kb on - strand, within Dshi_2377at 2510.853 kb on + strand, within Dshi_2377at 2510.866 kb on + strand, within Dshi_2377at 2510.893 kb on + strand, within Dshi_2377at 2510.898 kb on + strand, within Dshi_2377at 2510.898 kb on + strand, within Dshi_2377at 2510.898 kb on + strand, within Dshi_2377at 2510.963 kb on - strand, within Dshi_2377at 2511.022 kb on - strand, within Dshi_2377at 2511.083 kb on - strand, within Dshi_2377at 2511.088 kb on - strand, within Dshi_2377at 2511.088 kb on - strand, within Dshi_2377

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,508,660 - -0.7
2,508,702 - -0.6
2,508,747 - +2.3
2,508,837 - -0.3
2,508,851 - -0.6
2,508,966 - Dshi_2375 0.23 -1.0
2,508,995 + Dshi_2375 0.26 +0.5
2,509,003 - Dshi_2375 0.27 -0.2
2,509,192 + Dshi_2375 0.51 +0.2
2,509,198 - Dshi_2375 0.52 -0.5
2,509,246 + Dshi_2375 0.57 -0.3
2,509,369 - Dshi_2375 0.73 -0.2
2,509,400 + Dshi_2375 0.77 -1.3
2,509,601 + +1.7
2,509,617 - -0.9
2,509,691 + Dshi_2376 0.16 +0.8
2,509,709 - Dshi_2376 0.20 +0.2
2,509,745 - Dshi_2376 0.28 +0.7
2,509,774 + Dshi_2376 0.34 -1.0
2,509,774 + Dshi_2376 0.34 -0.4
2,509,817 - Dshi_2376 0.43 -0.9
2,509,869 - Dshi_2376 0.54 +2.0
2,509,942 + Dshi_2376 0.69 +1.5
2,510,059 + -0.3
2,510,099 - +0.3
2,510,109 - +0.4
2,510,269 - -0.3
2,510,277 + -0.6
2,510,360 - -0.7
2,510,439 + Dshi_2377 0.11 +2.8
2,510,447 - Dshi_2377 0.11 -1.9
2,510,447 - Dshi_2377 0.11 -0.9
2,510,468 - Dshi_2377 0.12 +0.8
2,510,471 - Dshi_2377 0.12 +1.0
2,510,539 + Dshi_2377 0.16 -0.4
2,510,681 - Dshi_2377 0.23 -0.4
2,510,717 - Dshi_2377 0.25 -0.6
2,510,722 + Dshi_2377 0.25 +1.6
2,510,774 + Dshi_2377 0.27 -0.4
2,510,782 - Dshi_2377 0.28 -0.3
2,510,784 + Dshi_2377 0.28 -0.1
2,510,792 - Dshi_2377 0.28 -0.3
2,510,792 - Dshi_2377 0.28 -0.0
2,510,812 - Dshi_2377 0.29 +0.6
2,510,853 + Dshi_2377 0.31 -1.0
2,510,866 + Dshi_2377 0.32 -0.9
2,510,893 + Dshi_2377 0.33 +0.8
2,510,898 + Dshi_2377 0.34 -0.1
2,510,898 + Dshi_2377 0.34 -0.1
2,510,898 + Dshi_2377 0.34 -0.3
2,510,963 - Dshi_2377 0.37 -0.2
2,511,022 - Dshi_2377 0.40 -0.6
2,511,083 - Dshi_2377 0.43 -0.0
2,511,088 - Dshi_2377 0.43 -0.0
2,511,088 - Dshi_2377 0.43 +0.3

Or see this region's nucleotide sequence