Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1374 and Dshi_1375 are separated by 341 nucleotides Dshi_1375 and Dshi_1376 are separated by 56 nucleotides Dshi_1376 and Dshi_1377 overlap by 8 nucleotides
Dshi_1374: Dshi_1374 - NMT1/THI5 like domain protein (RefSeq), at 1,427,332 to 1,428,321
_1374
Dshi_1375: Dshi_1375 - Ornithine decarboxylase (RefSeq), at 1,428,663 to 1,429,859
_1375
Dshi_1376: Dshi_1376 - Creatininase (RefSeq), at 1,429,916 to 1,430,713
_1376
Dshi_1377: Dshi_1377 - 2OG-Fe(II) oxygenase (RefSeq), at 1,430,706 to 1,431,608
_1377
Position (kb)
1428
1429
1430 Strain fitness (log2 ratio)
-2
-1
0
1 at 1427.674 kb on - strand, within Dshi_1374 at 1427.805 kb on + strand, within Dshi_1374 at 1427.919 kb on - strand, within Dshi_1374 at 1428.013 kb on + strand, within Dshi_1374 at 1428.073 kb on + strand, within Dshi_1374 at 1428.075 kb on + strand, within Dshi_1374 at 1428.310 kb on + strand at 1428.310 kb on + strand at 1428.434 kb on + strand at 1428.466 kb on - strand at 1429.153 kb on - strand, within Dshi_1375 at 1429.231 kb on + strand, within Dshi_1375 at 1429.648 kb on + strand, within Dshi_1375 at 1429.954 kb on - strand at 1430.128 kb on + strand, within Dshi_1376 at 1430.169 kb on + strand, within Dshi_1376 at 1430.172 kb on - strand, within Dshi_1376
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,427,674 - Dshi_1374 0.35 -0.6 1,427,805 + Dshi_1374 0.48 +0.4 1,427,919 - Dshi_1374 0.59 -0.6 1,428,013 + Dshi_1374 0.69 -0.3 1,428,073 + Dshi_1374 0.75 -0.3 1,428,075 + Dshi_1374 0.75 +0.6 1,428,310 + -1.3 1,428,310 + -0.2 1,428,434 + +0.2 1,428,466 - -1.3 1,429,153 - Dshi_1375 0.41 +0.2 1,429,231 + Dshi_1375 0.47 -0.5 1,429,648 + Dshi_1375 0.82 -2.1 1,429,954 - +0.1 1,430,128 + Dshi_1376 0.27 -0.3 1,430,169 + Dshi_1376 0.32 +1.3 1,430,172 - Dshi_1376 0.32 -0.6
Or see this region's nucleotide sequence