Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1280 and Dshi_1281 are separated by 292 nucleotides Dshi_1281 and Dshi_1282 are separated by 2 nucleotides
Dshi_1280: Dshi_1280 - aminotransferase class V (RefSeq), at 1,329,323 to 1,330,588
_1280
Dshi_1281: Dshi_1281 - Respiratory-chain NADH dehydrogenase domain 51 kDa subunit (RefSeq), at 1,330,881 to 1,332,578
_1281
Dshi_1282: Dshi_1282 - formate dehydrogenase, alpha subunit (RefSeq), at 1,332,581 to 1,335,382
_1282
Position (kb)
1330
1331
1332
1333 Strain fitness (log2 ratio)
-2
-1
0
1 at 1329.885 kb on + strand, within Dshi_1280 at 1329.961 kb on + strand, within Dshi_1280 at 1330.173 kb on - strand, within Dshi_1280 at 1330.238 kb on + strand, within Dshi_1280 at 1330.252 kb on + strand, within Dshi_1280 at 1330.258 kb on - strand, within Dshi_1280 at 1330.260 kb on - strand, within Dshi_1280 at 1330.318 kb on + strand, within Dshi_1280 at 1330.380 kb on + strand, within Dshi_1280 at 1330.420 kb on + strand, within Dshi_1280 at 1330.526 kb on + strand at 1330.527 kb on + strand at 1330.534 kb on - strand at 1330.581 kb on - strand at 1330.594 kb on + strand at 1330.650 kb on - strand at 1330.650 kb on - strand at 1330.675 kb on - strand at 1330.696 kb on - strand at 1330.700 kb on + strand at 1330.710 kb on + strand at 1330.710 kb on + strand at 1330.711 kb on + strand at 1330.718 kb on - strand at 1330.718 kb on - strand at 1330.773 kb on - strand at 1330.774 kb on - strand at 1330.833 kb on - strand at 1330.838 kb on + strand at 1330.838 kb on + strand at 1330.846 kb on - strand at 1330.851 kb on - strand at 1330.979 kb on + strand at 1330.984 kb on + strand at 1330.984 kb on + strand at 1330.992 kb on - strand at 1331.079 kb on - strand, within Dshi_1281 at 1331.083 kb on - strand, within Dshi_1281 at 1331.098 kb on + strand, within Dshi_1281 at 1331.207 kb on - strand, within Dshi_1281 at 1331.243 kb on - strand, within Dshi_1281 at 1331.415 kb on - strand, within Dshi_1281 at 1331.466 kb on - strand, within Dshi_1281 at 1331.592 kb on + strand, within Dshi_1281 at 1331.603 kb on + strand, within Dshi_1281 at 1331.628 kb on + strand, within Dshi_1281 at 1331.771 kb on + strand, within Dshi_1281 at 1331.945 kb on + strand, within Dshi_1281 at 1331.963 kb on - strand, within Dshi_1281 at 1332.011 kb on - strand, within Dshi_1281 at 1332.045 kb on - strand, within Dshi_1281 at 1332.086 kb on - strand, within Dshi_1281 at 1332.096 kb on + strand, within Dshi_1281 at 1332.121 kb on + strand, within Dshi_1281 at 1332.293 kb on - strand, within Dshi_1281 at 1332.343 kb on - strand, within Dshi_1281 at 1332.388 kb on + strand, within Dshi_1281 at 1332.389 kb on - strand, within Dshi_1281 at 1332.436 kb on + strand at 1332.518 kb on + strand at 1332.543 kb on - strand at 1332.575 kb on - strand at 1332.598 kb on + strand at 1332.620 kb on - strand at 1332.668 kb on - strand at 1332.820 kb on + strand at 1332.908 kb on + strand, within Dshi_1282 at 1333.179 kb on - strand, within Dshi_1282 at 1333.230 kb on - strand, within Dshi_1282 at 1333.290 kb on + strand, within Dshi_1282 at 1333.332 kb on + strand, within Dshi_1282 at 1333.351 kb on + strand, within Dshi_1282 at 1333.393 kb on + strand, within Dshi_1282 at 1333.494 kb on + strand, within Dshi_1282 at 1333.540 kb on - strand, within Dshi_1282 at 1333.563 kb on + strand, within Dshi_1282
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,329,885 + Dshi_1280 0.44 -0.4 1,329,961 + Dshi_1280 0.50 -1.6 1,330,173 - Dshi_1280 0.67 -0.2 1,330,238 + Dshi_1280 0.72 +0.4 1,330,252 + Dshi_1280 0.73 -0.1 1,330,258 - Dshi_1280 0.74 +0.5 1,330,260 - Dshi_1280 0.74 +0.3 1,330,318 + Dshi_1280 0.79 +0.1 1,330,380 + Dshi_1280 0.83 -0.1 1,330,420 + Dshi_1280 0.87 +0.7 1,330,526 + -0.2 1,330,527 + +0.3 1,330,534 - +1.2 1,330,581 - +0.2 1,330,594 + -1.2 1,330,650 - -0.8 1,330,650 - -0.4 1,330,675 - +1.0 1,330,696 - -0.6 1,330,700 + +1.4 1,330,710 + +0.2 1,330,710 + +0.0 1,330,711 + -0.4 1,330,718 - -0.8 1,330,718 - -2.6 1,330,773 - +0.5 1,330,774 - -0.6 1,330,833 - -0.2 1,330,838 + -0.9 1,330,838 + -0.5 1,330,846 - -0.3 1,330,851 - -0.1 1,330,979 + -0.6 1,330,984 + +0.1 1,330,984 + -0.6 1,330,992 - +0.2 1,331,079 - Dshi_1281 0.12 +0.2 1,331,083 - Dshi_1281 0.12 -0.8 1,331,098 + Dshi_1281 0.13 +0.6 1,331,207 - Dshi_1281 0.19 -0.7 1,331,243 - Dshi_1281 0.21 -0.3 1,331,415 - Dshi_1281 0.31 -1.6 1,331,466 - Dshi_1281 0.34 -0.4 1,331,592 + Dshi_1281 0.42 +1.0 1,331,603 + Dshi_1281 0.43 -0.3 1,331,628 + Dshi_1281 0.44 +0.2 1,331,771 + Dshi_1281 0.52 -1.3 1,331,945 + Dshi_1281 0.63 -0.5 1,331,963 - Dshi_1281 0.64 -0.7 1,332,011 - Dshi_1281 0.67 -0.8 1,332,045 - Dshi_1281 0.69 -0.2 1,332,086 - Dshi_1281 0.71 +0.7 1,332,096 + Dshi_1281 0.72 -1.2 1,332,121 + Dshi_1281 0.73 -1.5 1,332,293 - Dshi_1281 0.83 +0.4 1,332,343 - Dshi_1281 0.86 -1.0 1,332,388 + Dshi_1281 0.89 -1.0 1,332,389 - Dshi_1281 0.89 -1.3 1,332,436 + +0.2 1,332,518 + +0.6 1,332,543 - +0.3 1,332,575 - +0.6 1,332,598 + -0.0 1,332,620 - +0.0 1,332,668 - +1.3 1,332,820 + -0.2 1,332,908 + Dshi_1282 0.12 -0.2 1,333,179 - Dshi_1282 0.21 +1.4 1,333,230 - Dshi_1282 0.23 -0.7 1,333,290 + Dshi_1282 0.25 +0.3 1,333,332 + Dshi_1282 0.27 +0.6 1,333,351 + Dshi_1282 0.27 -0.4 1,333,393 + Dshi_1282 0.29 +0.2 1,333,494 + Dshi_1282 0.33 -0.2 1,333,540 - Dshi_1282 0.34 +1.0 1,333,563 + Dshi_1282 0.35 -0.0
Or see this region's nucleotide sequence