Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0186

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0184 and Dshi_0185 are separated by 39 nucleotidesDshi_0185 and Dshi_0186 overlap by 4 nucleotidesDshi_0186 and Dshi_0187 are separated by 22 nucleotides Dshi_0184: Dshi_0184 - hypothetical protein (RefSeq), at 186,252 to 186,704 _0184 Dshi_0185: Dshi_0185 - phosphatidate cytidylyltransferase (RefSeq), at 186,744 to 187,694 _0185 Dshi_0186: Dshi_0186 - phospholipid/glycerol acyltransferase (RefSeq), at 187,691 to 188,344 _0186 Dshi_0187: Dshi_0187 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 188,367 to 188,981 _0187 Position (kb) 187 188 189Strain fitness (log2 ratio) -2 -1 0 1at 186.741 kb on + strandat 186.749 kb on - strandat 186.749 kb on - strandat 186.855 kb on + strand, within Dshi_0185at 186.952 kb on + strand, within Dshi_0185at 186.952 kb on + strand, within Dshi_0185at 186.977 kb on + strand, within Dshi_0185at 187.004 kb on - strand, within Dshi_0185at 187.065 kb on - strand, within Dshi_0185at 187.140 kb on - strand, within Dshi_0185at 187.325 kb on - strand, within Dshi_0185at 187.330 kb on - strand, within Dshi_0185at 187.335 kb on - strand, within Dshi_0185at 187.352 kb on - strand, within Dshi_0185at 187.543 kb on + strand, within Dshi_0185at 187.774 kb on + strandat 187.806 kb on + strand, within Dshi_0186at 187.814 kb on - strand, within Dshi_0186at 188.180 kb on + strand, within Dshi_0186at 188.411 kb on - strandat 188.618 kb on + strand, within Dshi_0187at 188.818 kb on - strand, within Dshi_0187at 188.911 kb on + strand, within Dshi_0187at 188.918 kb on - strand, within Dshi_0187at 189.014 kb on - strandat 189.044 kb on + strandat 189.052 kb on - strandat 189.075 kb on - strandat 189.145 kb on + strandat 189.152 kb on + strandat 189.160 kb on - strandat 189.169 kb on - strandat 189.172 kb on - strandat 189.172 kb on - strandat 189.172 kb on - strandat 189.179 kb on + strandat 189.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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186,741 + -1.6
186,749 - +0.1
186,749 - -0.1
186,855 + Dshi_0185 0.12 +1.3
186,952 + Dshi_0185 0.22 +0.1
186,952 + Dshi_0185 0.22 -0.3
186,977 + Dshi_0185 0.25 -0.0
187,004 - Dshi_0185 0.27 -0.0
187,065 - Dshi_0185 0.34 +0.1
187,140 - Dshi_0185 0.42 -0.2
187,325 - Dshi_0185 0.61 +0.6
187,330 - Dshi_0185 0.62 +0.6
187,335 - Dshi_0185 0.62 -0.8
187,352 - Dshi_0185 0.64 -0.2
187,543 + Dshi_0185 0.84 +0.5
187,774 + -0.6
187,806 + Dshi_0186 0.18 -0.7
187,814 - Dshi_0186 0.19 +0.4
188,180 + Dshi_0186 0.75 -0.6
188,411 - -1.3
188,618 + Dshi_0187 0.41 -0.6
188,818 - Dshi_0187 0.73 -0.4
188,911 + Dshi_0187 0.88 -1.8
188,918 - Dshi_0187 0.90 -0.7
189,014 - +0.1
189,044 + -0.6
189,052 - -1.0
189,075 - -0.3
189,145 + -1.0
189,152 + -0.2
189,160 - -0.3
189,169 - -1.3
189,172 - -0.5
189,172 - +0.4
189,172 - -0.8
189,179 + +0.5
189,218 - -0.2

Or see this region's nucleotide sequence