Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0018 and Dshi_0019 are separated by 236 nucleotides Dshi_0019 and Dshi_0020 are separated by 613 nucleotides
Dshi_0018: Dshi_0018 - multicopper oxidase type 2 (RefSeq), at 20,326 to 22,629
_0018
Dshi_0019: Dshi_0019 - GTP-binding protein TypA (RefSeq), at 22,866 to 24,683
_0019
Dshi_0020: Dshi_0020 - putative transcriptional regulator, CadC (RefSeq), at 25,297 to 26,019
_0020
Position (kb)
22
23
24
25 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 21.939 kb on + strand, within Dshi_0018 at 22.046 kb on - strand, within Dshi_0018 at 22.052 kb on + strand, within Dshi_0018 at 22.060 kb on - strand, within Dshi_0018 at 22.083 kb on + strand, within Dshi_0018 at 22.093 kb on - strand, within Dshi_0018 at 22.103 kb on - strand, within Dshi_0018 at 22.205 kb on - strand, within Dshi_0018 at 22.241 kb on + strand, within Dshi_0018 at 22.249 kb on - strand, within Dshi_0018 at 22.290 kb on + strand, within Dshi_0018 at 22.298 kb on - strand, within Dshi_0018 at 22.330 kb on - strand, within Dshi_0018 at 22.356 kb on - strand, within Dshi_0018 at 22.472 kb on - strand at 22.482 kb on + strand at 22.528 kb on + strand at 22.536 kb on - strand at 22.669 kb on - strand at 22.690 kb on - strand at 22.710 kb on - strand at 22.716 kb on - strand at 22.744 kb on + strand at 22.773 kb on - strand at 22.787 kb on + strand at 22.864 kb on + strand at 22.871 kb on - strand at 22.871 kb on - strand at 22.896 kb on + strand at 22.904 kb on - strand at 22.907 kb on + strand at 22.975 kb on - strand at 23.030 kb on + strand at 23.066 kb on + strand, within Dshi_0019 at 23.129 kb on - strand at 23.197 kb on + strand, within Dshi_0019 at 23.282 kb on + strand, within Dshi_0019 at 23.290 kb on - strand, within Dshi_0019 at 23.370 kb on - strand, within Dshi_0019 at 23.454 kb on - strand, within Dshi_0019 at 23.520 kb on + strand, within Dshi_0019 at 23.630 kb on - strand, within Dshi_0019 at 23.713 kb on - strand, within Dshi_0019 at 23.906 kb on - strand, within Dshi_0019 at 23.998 kb on + strand, within Dshi_0019 at 24.016 kb on - strand, within Dshi_0019 at 24.079 kb on + strand, within Dshi_0019 at 24.179 kb on + strand, within Dshi_0019 at 24.269 kb on - strand, within Dshi_0019 at 24.291 kb on + strand, within Dshi_0019 at 24.295 kb on + strand, within Dshi_0019 at 24.361 kb on + strand, within Dshi_0019 at 24.384 kb on + strand, within Dshi_0019 at 24.392 kb on - strand, within Dshi_0019 at 24.409 kb on + strand, within Dshi_0019 at 24.428 kb on - strand, within Dshi_0019 at 24.559 kb on + strand at 24.561 kb on - strand at 24.567 kb on - strand at 24.830 kb on + strand at 25.040 kb on + strand at 25.118 kb on - strand at 25.240 kb on + strand at 25.552 kb on - strand, within Dshi_0020 at 25.605 kb on + strand, within Dshi_0020 at 25.658 kb on + strand, within Dshi_0020
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 21,939 + Dshi_0018 0.70 -1.8 22,046 - Dshi_0018 0.75 -0.7 22,052 + Dshi_0018 0.75 -0.1 22,060 - Dshi_0018 0.75 -0.0 22,083 + Dshi_0018 0.76 +0.2 22,093 - Dshi_0018 0.77 -0.0 22,103 - Dshi_0018 0.77 -0.0 22,205 - Dshi_0018 0.82 -1.6 22,241 + Dshi_0018 0.83 +0.2 22,249 - Dshi_0018 0.83 +0.4 22,290 + Dshi_0018 0.85 -0.8 22,298 - Dshi_0018 0.86 +0.2 22,330 - Dshi_0018 0.87 +1.5 22,356 - Dshi_0018 0.88 +1.4 22,472 - -0.4 22,482 + -0.0 22,528 + +0.7 22,536 - +0.6 22,669 - -0.1 22,690 - -0.4 22,710 - -0.5 22,716 - -0.9 22,744 + +0.1 22,773 - -2.0 22,787 + -0.8 22,864 + -0.3 22,871 - +0.6 22,871 - -0.3 22,896 + +2.0 22,904 - -0.2 22,907 + -0.3 22,975 - -0.1 23,030 + -0.8 23,066 + Dshi_0019 0.11 -0.4 23,129 - +0.2 23,197 + Dshi_0019 0.18 -0.6 23,282 + Dshi_0019 0.23 -0.2 23,290 - Dshi_0019 0.23 +1.2 23,370 - Dshi_0019 0.28 +0.2 23,454 - Dshi_0019 0.32 -0.1 23,520 + Dshi_0019 0.36 -0.9 23,630 - Dshi_0019 0.42 -0.3 23,713 - Dshi_0019 0.47 -0.0 23,906 - Dshi_0019 0.57 +0.4 23,998 + Dshi_0019 0.62 -0.4 24,016 - Dshi_0019 0.63 -0.9 24,079 + Dshi_0019 0.67 -0.6 24,179 + Dshi_0019 0.72 +0.1 24,269 - Dshi_0019 0.77 +0.6 24,291 + Dshi_0019 0.78 -0.0 24,295 + Dshi_0019 0.79 -0.3 24,361 + Dshi_0019 0.82 -0.8 24,384 + Dshi_0019 0.83 -1.0 24,392 - Dshi_0019 0.84 -0.8 24,409 + Dshi_0019 0.85 -0.4 24,428 - Dshi_0019 0.86 +0.6 24,559 + +0.2 24,561 - +0.6 24,567 - +1.0 24,830 + -1.4 25,040 + +1.0 25,118 - -0.8 25,240 + +0.0 25,552 - Dshi_0020 0.35 +0.3 25,605 + Dshi_0020 0.43 -0.0 25,658 + Dshi_0020 0.50 -0.2
Or see this region's nucleotide sequence