Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3367

Experiment: MoLS4 with Casaminos 0.2%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfmt and def overlap by 28 nucleotidesdef and aspS are separated by 302 nucleotidesaspS and hisS are separated by 18 nucleotides DVU3365: fmt - methionyl-tRNA formyltransferase (TIGR), at 3,535,794 to 3,536,786 fmt DVU3366: def - polypeptide deformylase (TIGR), at 3,536,759 to 3,537,274 def DVU3367: aspS - aspartyl-tRNA synthetase (TIGR), at 3,537,577 to 3,539,409 aspS DVU3368: hisS - histidyl-tRNA synthetase (TIGR), at 3,539,428 to 3,540,681 hisS Position (kb) 3537 3538 3539 3540Strain fitness (log2 ratio) -2 -1 0 1at 3536.769 kb on - strandat 3537.285 kb on + strandat 3537.285 kb on + strandat 3537.292 kb on + strandat 3537.293 kb on - strandat 3537.293 kb on - strandat 3537.300 kb on - strandat 3537.300 kb on - strandat 3537.306 kb on + strandat 3537.324 kb on - strandat 3537.336 kb on - strandat 3537.397 kb on - strandat 3537.433 kb on + strandat 3537.457 kb on + strandat 3537.457 kb on + strandat 3537.457 kb on + strandat 3537.457 kb on + strandat 3537.465 kb on - strandat 3537.465 kb on - strandat 3537.489 kb on + strandat 3537.489 kb on + strandat 3537.497 kb on - strandat 3537.497 kb on - strandat 3537.517 kb on - strandat 3537.602 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Casaminos 0.2%
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3,536,769 - -1.7
3,537,285 + +0.2
3,537,285 + -0.8
3,537,292 + -2.0
3,537,293 - -0.4
3,537,293 - +0.4
3,537,300 - +0.4
3,537,300 - -0.3
3,537,306 + -0.9
3,537,324 - -0.1
3,537,336 - -0.2
3,537,397 - +0.4
3,537,433 + +0.4
3,537,457 + -0.1
3,537,457 + -1.1
3,537,457 + +0.1
3,537,457 + +0.1
3,537,465 - +0.1
3,537,465 - +0.1
3,537,489 + +0.0
3,537,489 + -0.7
3,537,497 - +0.3
3,537,497 - -0.6
3,537,517 - -0.8
3,537,602 + -0.6

Or see this region's nucleotide sequence