Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15250

Experiment: R2A with Calcium chloride 125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Calcium chloride 125 mM
3,363,979	+		LRK54_RS15245	0.79	+1.6
3,364,271	-				+1.2
3,364,271	-				+0.8
3,364,339	+				-0.2
3,364,339	+				-0.9
3,364,339	+				+0.4
3,364,340	-				-0.9
3,364,340	-				-2.0
3,364,545	+				+0.5
3,364,545	+				+0.7
3,364,545	+				+1.3
3,364,545	+				-0.3
3,364,546	-				+0.0
3,364,546	-				-1.2
3,364,546	-				+0.3
3,364,546	-				-0.8
3,364,546	-				-1.4
3,364,546	-				+0.2
3,364,546	-				+2.0
3,364,687	-		LRK54_RS15250	0.17	-1.5
3,364,743	+		LRK54_RS15250	0.20	-0.1
3,364,743	+		LRK54_RS15250	0.20	-0.2
3,364,743	+		LRK54_RS15250	0.20	-1.3
3,364,743	+		LRK54_RS15250	0.20	-2.0
3,364,743	+		LRK54_RS15250	0.20	+0.7
3,364,743	+		LRK54_RS15250	0.20	-1.1
3,364,743	+		LRK54_RS15250	0.20	-0.7
3,364,743	+		LRK54_RS15250	0.20	+0.2
3,364,743	+		LRK54_RS15250	0.20	-0.9
3,364,743	+		LRK54_RS15250	0.20	-1.8
3,364,744	-		LRK54_RS15250	0.20	-0.3
3,364,744	-		LRK54_RS15250	0.20	+0.0
3,364,744	-		LRK54_RS15250	0.20	-0.1
3,364,744	-		LRK54_RS15250	0.20	-1.0
3,364,744	-		LRK54_RS15250	0.20	-0.4
3,364,744	-		LRK54_RS15250	0.20	+0.6
3,364,744	-		LRK54_RS15250	0.20	-1.1
3,364,754	+		LRK54_RS15250	0.21	+1.1
3,364,754	+		LRK54_RS15250	0.21	-2.7
3,364,754	+		LRK54_RS15250	0.21	+0.9
3,364,754	+		LRK54_RS15250	0.21	-1.3
3,364,754	+		LRK54_RS15250	0.21	-0.4
3,364,754	+		LRK54_RS15250	0.21	-1.0
3,364,754	+		LRK54_RS15250	0.21	-0.4
3,364,754	+		LRK54_RS15250	0.21	+1.8
3,364,754	+		LRK54_RS15250	0.21	-1.9
3,364,754	+		LRK54_RS15250	0.21	+0.1
3,364,754	+		LRK54_RS15250	0.21	-0.9
3,364,754	+		LRK54_RS15250	0.21	-0.7
3,364,754	+		LRK54_RS15250	0.21	-1.2
3,364,754	+		LRK54_RS15250	0.21	-1.0
3,364,754	+		LRK54_RS15250	0.21	-0.8
3,364,754	+		LRK54_RS15250	0.21	-1.0
3,364,754	+		LRK54_RS15250	0.21	-0.4
3,364,755	-		LRK54_RS15250	0.21	+2.0
3,364,755	-		LRK54_RS15250	0.21	+0.3
3,364,755	-		LRK54_RS15250	0.21	-0.9
3,364,755	-		LRK54_RS15250	0.21	-0.8
3,364,755	-		LRK54_RS15250	0.21	+0.3
3,364,755	-		LRK54_RS15250	0.21	-1.7
3,364,755	-		LRK54_RS15250	0.21	+0.6
3,364,755	-		LRK54_RS15250	0.21	-0.5
3,364,755	-		LRK54_RS15250	0.21	-0.7
3,364,799	+		LRK54_RS15250	0.23	+1.6
3,364,799	+		LRK54_RS15250	0.23	+0.5
3,364,799	+		LRK54_RS15250	0.23	-0.9
3,364,799	+		LRK54_RS15250	0.23	-1.4
3,364,799	+		LRK54_RS15250	0.23	-1.4
3,364,799	+		LRK54_RS15250	0.23	+3.6
3,364,800	-		LRK54_RS15250	0.24	+0.6
3,364,800	-		LRK54_RS15250	0.24	+0.9
3,364,800	-		LRK54_RS15250	0.24	-0.6
3,364,854	+		LRK54_RS15250	0.27	-0.6
3,364,854	+		LRK54_RS15250	0.27	-0.4
3,364,854	+		LRK54_RS15250	0.27	+1.1
3,364,854	+		LRK54_RS15250	0.27	-0.4
3,364,854	+		LRK54_RS15250	0.27	+0.6
3,364,854	+		LRK54_RS15250	0.27	-1.2
3,364,854	+		LRK54_RS15250	0.27	+0.4
3,364,854	+		LRK54_RS15250	0.27	-0.7
3,364,854	+		LRK54_RS15250	0.27	+0.3
3,364,854	+		LRK54_RS15250	0.27	-2.4
3,364,854	+		LRK54_RS15250	0.27	-1.3
3,364,854	+		LRK54_RS15250	0.27	+1.6
3,364,854	+		LRK54_RS15250	0.27	-0.3
3,364,854	+		LRK54_RS15250	0.27	-2.3
3,364,855	-		LRK54_RS15250	0.27	-0.5
3,364,855	-		LRK54_RS15250	0.27	-0.3
3,364,855	-		LRK54_RS15250	0.27	-0.8
3,364,855	-		LRK54_RS15250	0.27	-0.6
3,364,855	-		LRK54_RS15250	0.27	-0.1
3,364,855	-		LRK54_RS15250	0.27	+1.6
3,364,855	-		LRK54_RS15250	0.27	+0.2
3,364,855	-		LRK54_RS15250	0.27	+0.2
3,364,922	+		LRK54_RS15250	0.31	+0.2
3,364,922	+		LRK54_RS15250	0.31	+0.1
3,364,923	-		LRK54_RS15250	0.31	-0.2
3,365,013	+		LRK54_RS15250	0.36	-0.5
3,365,151	-		LRK54_RS15250	0.44	-0.9
3,365,634	+		LRK54_RS15250	0.73	-1.4
3,365,634	+		LRK54_RS15250	0.73	-0.1
3,365,634	+		LRK54_RS15250	0.73	+0.1
3,365,634	+		LRK54_RS15250	0.73	-2.0
3,365,634	+		LRK54_RS15250	0.73	+1.3
3,365,635	-		LRK54_RS15250	0.73	+0.4
3,365,635	-		LRK54_RS15250	0.73	+0.5
3,365,736	+		LRK54_RS15250	0.79	-1.6
3,365,736	+		LRK54_RS15250	0.79	+0.0
3,365,736	+		LRK54_RS15250	0.79	+0.0
3,365,736	+		LRK54_RS15250	0.79	+0.8
3,365,736	+		LRK54_RS15250	0.79	-1.1
3,365,736	+		LRK54_RS15250	0.79	+0.1
3,365,736	+		LRK54_RS15250	0.79	-0.5
3,365,736	+		LRK54_RS15250	0.79	+1.2
3,365,736	+		LRK54_RS15250	0.79	+0.6
3,365,736	+		LRK54_RS15250	0.79	-0.7
3,365,736	+		LRK54_RS15250	0.79	-0.9
3,365,736	+		LRK54_RS15250	0.79	+0.4
3,365,736	+		LRK54_RS15250	0.79	+0.5
3,365,736	+		LRK54_RS15250	0.79	+0.3
3,365,736	+		LRK54_RS15250	0.79	+1.0
3,365,736	+		LRK54_RS15250	0.79	-2.3
3,365,736	+		LRK54_RS15250	0.79	+0.4
3,365,736	+		LRK54_RS15250	0.79	-0.7
3,365,736	+		LRK54_RS15250	0.79	-0.7
3,365,736	+		LRK54_RS15250	0.79	+0.0
3,365,736	+		LRK54_RS15250	0.79	+0.8
3,365,736	+		LRK54_RS15250	0.79	+1.4
3,365,736	+		LRK54_RS15250	0.79	-0.2
3,365,736	+		LRK54_RS15250	0.79	+1.0
3,365,736	+		LRK54_RS15250	0.79	+0.3
3,365,736	+		LRK54_RS15250	0.79	+0.3
3,365,736	+		LRK54_RS15250	0.79	-0.2
3,365,736	+		LRK54_RS15250	0.79	+0.0
3,365,736	+		LRK54_RS15250	0.79	-1.3
3,365,737	-		LRK54_RS15250	0.79	+0.2
3,365,737	-		LRK54_RS15250	0.79	-0.4
3,365,737	-		LRK54_RS15250	0.79	-2.1
3,365,737	-		LRK54_RS15250	0.79	-0.3
3,365,737	-		LRK54_RS15250	0.79	-0.5
3,365,737	-		LRK54_RS15250	0.79	-0.5
3,365,737	-		LRK54_RS15250	0.79	-0.3
3,365,737	-		LRK54_RS15250	0.79	-0.2
3,365,737	-		LRK54_RS15250	0.79	+0.6
3,365,737	-		LRK54_RS15250	0.79	+0.6
3,365,737	-		LRK54_RS15250	0.79	+0.3
3,365,737	-		LRK54_RS15250	0.79	-1.6
3,365,737	-		LRK54_RS15250	0.79	-0.9
3,365,737	-		LRK54_RS15250	0.79	-1.6
3,365,737	-		LRK54_RS15250	0.79	+0.5
3,365,737	-		LRK54_RS15250	0.79	+1.4
3,365,737	-		LRK54_RS15250	0.79	-1.2
3,365,737	-		LRK54_RS15250	0.79	+0.5
3,365,737	-		LRK54_RS15250	0.79	+0.1
3,365,737	-		LRK54_RS15250	0.79	+0.9
3,365,737	-		LRK54_RS15250	0.79	+0.6
3,365,737	-		LRK54_RS15250	0.79	-0.2
3,366,135	+				-1.7
3,366,135	+				-1.5
3,366,135	+				+0.0
3,366,135	+				-0.8
3,366,135	+				+0.0
3,366,135	+				+0.2
3,366,135	+				-0.2
3,366,135	+				+0.6
3,366,135	+				+1.7
3,366,135	+				+0.9
3,366,135	+				+1.5
3,366,135	+				-0.6
3,366,135	+				+0.6
3,366,135	+				-0.7
3,366,135	+				-0.4
3,366,135	+				-1.9
3,366,135	+				+0.0
3,366,135	+				+0.1
3,366,135	+				+0.6
3,366,135	+				+0.1
3,366,135	+				+1.3
3,366,135	+				-0.1
3,366,135	+				-0.6
3,366,135	+				+0.0
3,366,135	+				+0.1
3,366,136	-				+0.7
3,366,136	-				+1.3
3,366,136	-				-1.0
3,366,136	-				-1.6
3,366,136	-				-0.3
3,366,136	-				-0.3
3,366,136	-				+0.4
3,366,136	-				+1.0
3,366,136	-				+0.9
3,366,136	-				-0.4
3,366,136	-				+0.6
3,366,136	-				-0.1
3,366,136	-				-0.4
3,366,136	-				+0.1
3,366,136	-				-0.0
3,366,136	-				+0.4
3,366,136	-				-1.9
3,366,136	-				-1.5
3,366,136	-				+0.1
3,366,136	-				-1.0
3,366,136	-				+1.4
3,366,136	-				-0.5
3,366,136	-				+0.2
3,366,136	-				-0.7
3,366,153	+				+3.6
3,366,153	+				-1.7
3,366,154	-				-1.7
3,366,154	-				+0.9
3,366,154	-				-0.8
3,366,154	-				-1.2
3,366,264	+				-0.3
3,366,264	+				-0.4
3,366,264	+				-0.4
3,366,264	+				+2.6
3,366,264	+				-1.8
3,366,264	+				-1.2
3,366,264	+				-0.8
3,366,264	+				-0.6
3,366,264	+				+0.0
3,366,264	+				-1.7
3,366,264	+				-1.9
3,366,264	+				+1.6
3,366,264	+				-0.5
3,366,264	+				+1.0
3,366,264	+				+0.6
3,366,265	-				-1.4
3,366,265	-				-0.0
3,366,265	-				-0.7
3,366,265	-				-1.1
3,366,265	-				-1.0
3,366,265	-				+0.5
3,366,265	-				+0.7
3,366,265	-				-1.6
3,366,265	-				-0.4
3,366,265	-				-1.3
3,366,265	-				+0.0
3,366,265	-				+0.5
3,366,265	-				+0.6
3,366,267	+				-1.0
3,366,267	+				+0.0
3,366,267	+				-2.1
3,366,267	+				-1.8
3,366,267	+				+0.0
3,366,267	+				-0.3
3,366,267	+				-1.0
3,366,267	+				+0.0
3,366,267	+				-2.5
3,366,268	-				+0.3
3,366,268	-				+0.2
3,366,268	-				+0.5
3,366,268	-				-0.3
3,366,268	-				+2.3
3,366,288	+				+1.6
3,366,288	+				+0.6
3,366,288	+				-1.5
3,366,288	+				-0.6
3,366,289	-				-1.3
3,366,289	-				-0.6
3,366,289	-				+0.7
3,366,289	-				-1.7
3,366,289	-				-1.2
3,366,289	-				+0.4
3,366,456	+		LRK54_RS15255	0.20	+0.6
3,366,457	-		LRK54_RS15255	0.20	-1.0
3,366,477	+		LRK54_RS15255	0.21	-0.3
3,366,477	+		LRK54_RS15255	0.21	+0.0
3,366,477	+		LRK54_RS15255	0.21	-1.2
3,366,477	+		LRK54_RS15255	0.21	-1.9
3,366,477	+		LRK54_RS15255	0.21	-1.7
3,366,477	+		LRK54_RS15255	0.21	-1.6
3,366,477	+		LRK54_RS15255	0.21	-1.8
3,366,477	+		LRK54_RS15255	0.21	+0.6
3,366,477	+		LRK54_RS15255	0.21	-0.5
3,366,477	+		LRK54_RS15255	0.21	+0.5
3,366,477	+		LRK54_RS15255	0.21	+0.5
3,366,477	+		LRK54_RS15255	0.21	-0.7
3,366,477	+		LRK54_RS15255	0.21	-0.4
3,366,477	+		LRK54_RS15255	0.21	-0.4
3,366,477	+		LRK54_RS15255	0.21	-1.6
3,366,477	+		LRK54_RS15255	0.21	-1.2
3,366,477	+		LRK54_RS15255	0.21	+0.4
3,366,478	-		LRK54_RS15255	0.21	-1.0
3,366,478	-		LRK54_RS15255	0.21	-1.6
3,366,478	-		LRK54_RS15255	0.21	+1.0
3,366,478	-		LRK54_RS15255	0.21	+0.1
3,366,478	-		LRK54_RS15255	0.21	-1.4
3,366,478	-		LRK54_RS15255	0.21	+0.6
3,366,478	-		LRK54_RS15255	0.21	-1.2
3,366,478	-		LRK54_RS15255	0.21	-2.1
3,366,478	-		LRK54_RS15255	0.21	-1.0
3,366,478	-		LRK54_RS15255	0.21	+0.1
3,366,478	-		LRK54_RS15255	0.21	-1.8
3,366,478	-		LRK54_RS15255	0.21	-0.4
3,366,478	-		LRK54_RS15255	0.21	+0.2
3,366,478	-		LRK54_RS15255	0.21	-2.2
3,366,478	-		LRK54_RS15255	0.21	-1.5
3,366,478	-		LRK54_RS15255	0.21	+1.2
3,366,478	-		LRK54_RS15255	0.21	-1.0
3,366,478	-		LRK54_RS15255	0.21	+0.8
3,366,478	-		LRK54_RS15255	0.21	+1.6
3,366,478	-		LRK54_RS15255	0.21	-1.9
3,366,478	-		LRK54_RS15255	0.21	-1.6
3,366,478	-		LRK54_RS15255	0.21	+0.3
3,366,588	+		LRK54_RS15255	0.28	-0.4
3,366,588	+		LRK54_RS15255	0.28	-0.1
3,366,588	+		LRK54_RS15255	0.28	-0.3
3,366,588	+		LRK54_RS15255	0.28	+0.6
3,366,588	+		LRK54_RS15255	0.28	-1.0
3,366,588	+		LRK54_RS15255	0.28	-1.4
3,366,588	+		LRK54_RS15255	0.28	-0.4
3,366,589	-		LRK54_RS15255	0.28	-1.3
3,366,589	-		LRK54_RS15255	0.28	+0.7
3,366,589	-		LRK54_RS15255	0.28	+0.0
3,366,589	-		LRK54_RS15255	0.28	-0.4
3,366,589	-		LRK54_RS15255	0.28	-1.3
3,366,589	-		LRK54_RS15255	0.28	-0.4
3,366,589	-		LRK54_RS15255	0.28	-1.1
3,366,589	-		LRK54_RS15255	0.28	-0.4
3,366,589	-		LRK54_RS15255	0.28	-0.1
3,366,589	-		LRK54_RS15255	0.28	+1.3
3,366,873	+		LRK54_RS15255	0.46	-0.2
3,366,874	-		LRK54_RS15255	0.46	-0.4
3,366,874	-		LRK54_RS15255	0.46	-0.4
3,366,874	-		LRK54_RS15255	0.46	+0.2
3,366,891	+		LRK54_RS15255	0.47	+0.7
3,366,891	+		LRK54_RS15255	0.47	-1.0
3,366,891	+		LRK54_RS15255	0.47	+0.9
3,366,891	+		LRK54_RS15255	0.47	+0.8
3,366,891	+		LRK54_RS15255	0.47	+0.0
3,366,891	+		LRK54_RS15255	0.47	+0.3
3,366,891	+		LRK54_RS15255	0.47	-0.3
3,366,891	+		LRK54_RS15255	0.47	-1.9
3,366,891	+		LRK54_RS15255	0.47	-1.4
3,366,891	+		LRK54_RS15255	0.47	-0.8
3,366,892	-		LRK54_RS15255	0.47	+1.0
3,366,892	-		LRK54_RS15255	0.47	-0.0
3,366,892	-		LRK54_RS15255	0.47	+0.4
3,366,892	-		LRK54_RS15255	0.47	-2.1
3,366,892	-		LRK54_RS15255	0.47	-1.4
3,366,892	-		LRK54_RS15255	0.47	-0.4
3,366,892	-		LRK54_RS15255	0.47	-0.7
3,366,892	-		LRK54_RS15255	0.47	-0.4
3,366,892	-		LRK54_RS15255	0.47	+0.5
3,366,892	-		LRK54_RS15255	0.47	-0.4
3,366,892	-		LRK54_RS15255	0.47	+0.2
3,366,892	-		LRK54_RS15255	0.47	-1.0
3,367,085	+		LRK54_RS15255	0.59	-1.2
3,367,085	+		LRK54_RS15255	0.59	+2.0
3,367,085	+		LRK54_RS15255	0.59	+0.6
3,367,086	-		LRK54_RS15255	0.59	-1.7