Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3748

Experiment: Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3746 and Ga0059261_3747 are separated by 5 nucleotidesGa0059261_3747 and Ga0059261_3748 are separated by 114 nucleotidesGa0059261_3748 and Ga0059261_3749 are separated by 114 nucleotides Ga0059261_3746: Ga0059261_3746 - ribosomal protein S5, bacterial/organelle type, at 3,848,871 to 3,849,584 _3746 Ga0059261_3747: Ga0059261_3747 - ribosomal protein L30, bacterial/organelle, at 3,849,590 to 3,849,787 _3747 Ga0059261_3748: Ga0059261_3748 - ribosomal protein L15, bacterial/organelle, at 3,849,902 to 3,850,438 _3748 Ga0059261_3749: Ga0059261_3749 - protein translocase subunit secY/sec61 alpha, at 3,850,553 to 3,851,917 _3749 Position (kb) 3849 3850 3851Strain fitness (log2 ratio) -1 0 1at 3850.372 kb on + strand, within Ga0059261_3748at 3850.372 kb on + strand, within Ga0059261_3748at 3850.372 kb on + strand, within Ga0059261_3748at 3850.372 kb on + strand, within Ga0059261_3748at 3850.372 kb on + strand, within Ga0059261_3748at 3850.372 kb on + strandat 3850.373 kb on - strandat 3850.373 kb on - strand, within Ga0059261_3748at 3850.373 kb on - strandat 3850.373 kb on - strand, within Ga0059261_3748

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
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3,850,372 + Ga0059261_3748 0.88 -0.7
3,850,372 + Ga0059261_3748 0.88 -0.8
3,850,372 + Ga0059261_3748 0.88 +0.2
3,850,372 + Ga0059261_3748 0.88 -1.4
3,850,372 + Ga0059261_3748 0.88 -1.0
3,850,372 + +1.2
3,850,373 - -1.2
3,850,373 - Ga0059261_3748 0.88 -1.2
3,850,373 - +1.2
3,850,373 - Ga0059261_3748 0.88 -0.7

Or see this region's nucleotide sequence