Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2391

Experiment: Chlorite 1.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_2389 and Ga0059261_2390 are separated by 78 nucleotidesGa0059261_2390 and Ga0059261_2391 are separated by 73 nucleotidesGa0059261_2391 and Ga0059261_2392 are separated by 90 nucleotidesGa0059261_2392 and Ga0059261_2393 overlap by 16 nucleotides Ga0059261_2389: Ga0059261_2389 - Predicted Co/Zn/Cd cation transporters, at 2,486,482 to 2,487,408 _2389 Ga0059261_2390: Ga0059261_2390 - hypothetical protein, at 2,487,487 to 2,487,849 _2390 Ga0059261_2391: Ga0059261_2391 - Helix-turn-helix domain, at 2,487,923 to 2,488,492 _2391 Ga0059261_2392: Ga0059261_2392 - hypothetical protein, at 2,488,583 to 2,489,062 _2392 Ga0059261_2393: Ga0059261_2393 - Predicted membrane protein, at 2,489,047 to 2,491,509 _2393 Position (kb) 2487 2488 2489Strain fitness (log2 ratio) -2 -1 0 1 2at 2487.007 kb on + strand, within Ga0059261_2389at 2487.008 kb on - strand, within Ga0059261_2389at 2487.046 kb on + strand, within Ga0059261_2389at 2487.046 kb on + strand, within Ga0059261_2389at 2487.046 kb on + strand, within Ga0059261_2389at 2487.046 kb on + strand, within Ga0059261_2389at 2487.046 kb on + strand, within Ga0059261_2389at 2487.047 kb on - strand, within Ga0059261_2389at 2487.047 kb on - strand, within Ga0059261_2389at 2487.047 kb on - strand, within Ga0059261_2389at 2487.047 kb on - strand, within Ga0059261_2389at 2487.047 kb on - strand, within Ga0059261_2389at 2487.047 kb on - strand, within Ga0059261_2389at 2487.106 kb on - strand, within Ga0059261_2389at 2487.214 kb on + strand, within Ga0059261_2389at 2487.215 kb on - strand, within Ga0059261_2389at 2487.215 kb on - strand, within Ga0059261_2389at 2487.215 kb on - strand, within Ga0059261_2389at 2487.223 kb on + strandat 2487.223 kb on + strand, within Ga0059261_2389at 2487.223 kb on + strand, within Ga0059261_2389at 2487.223 kb on + strand, within Ga0059261_2389at 2487.223 kb on + strand, within Ga0059261_2389at 2487.223 kb on + strand, within Ga0059261_2389at 2487.223 kb on + strand, within Ga0059261_2389at 2487.224 kb on - strand, within Ga0059261_2389at 2487.224 kb on - strand, within Ga0059261_2389at 2487.536 kb on + strand, within Ga0059261_2390at 2487.536 kb on + strand, within Ga0059261_2390at 2487.536 kb on + strand, within Ga0059261_2390at 2487.536 kb on + strand, within Ga0059261_2390at 2487.536 kb on + strand, within Ga0059261_2390at 2487.536 kb on + strand, within Ga0059261_2390at 2487.536 kb on + strand, within Ga0059261_2390at 2487.536 kb on + strand, within Ga0059261_2390at 2487.536 kb on + strand, within Ga0059261_2390at 2487.537 kb on - strand, within Ga0059261_2390at 2487.537 kb on - strand, within Ga0059261_2390at 2487.537 kb on - strand, within Ga0059261_2390at 2487.537 kb on - strand, within Ga0059261_2390at 2487.537 kb on - strand, within Ga0059261_2390at 2487.537 kb on - strand, within Ga0059261_2390at 2487.537 kb on - strand, within Ga0059261_2390at 2487.867 kb on - strandat 2487.924 kb on + strandat 2487.924 kb on + strandat 2487.924 kb on + strandat 2487.925 kb on - strandat 2488.013 kb on - strand, within Ga0059261_2391at 2488.013 kb on - strand, within Ga0059261_2391at 2488.345 kb on + strand, within Ga0059261_2391at 2488.532 kb on + strandat 2488.760 kb on + strand, within Ga0059261_2392at 2489.048 kb on + strandat 2489.048 kb on + strandat 2489.049 kb on - strandat 2489.096 kb on + strandat 2489.096 kb on + strandat 2489.097 kb on - strandat 2489.303 kb on + strand, within Ga0059261_2393at 2489.304 kb on - strand, within Ga0059261_2393at 2489.304 kb on - strand, within Ga0059261_2393at 2489.309 kb on + strand, within Ga0059261_2393at 2489.309 kb on + strand, within Ga0059261_2393at 2489.309 kb on + strand, within Ga0059261_2393at 2489.309 kb on + strand, within Ga0059261_2393at 2489.309 kb on + strand, within Ga0059261_2393at 2489.309 kb on + strand, within Ga0059261_2393at 2489.309 kb on + strand, within Ga0059261_2393at 2489.309 kb on + strand, within Ga0059261_2393at 2489.310 kb on - strand, within Ga0059261_2393at 2489.310 kb on - strand, within Ga0059261_2393at 2489.310 kb on - strand, within Ga0059261_2393at 2489.310 kb on - strand, within Ga0059261_2393

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
remove
2,487,007 + Ga0059261_2389 0.57 -1.5
2,487,008 - Ga0059261_2389 0.57 +0.4
2,487,046 + Ga0059261_2389 0.61 +0.5
2,487,046 + Ga0059261_2389 0.61 +1.0
2,487,046 + Ga0059261_2389 0.61 +0.4
2,487,046 + Ga0059261_2389 0.61 +0.1
2,487,046 + Ga0059261_2389 0.61 +0.0
2,487,047 - Ga0059261_2389 0.61 -0.3
2,487,047 - Ga0059261_2389 0.61 -0.9
2,487,047 - Ga0059261_2389 0.61 +0.1
2,487,047 - Ga0059261_2389 0.61 -0.4
2,487,047 - Ga0059261_2389 0.61 +0.2
2,487,047 - Ga0059261_2389 0.61 +0.6
2,487,106 - Ga0059261_2389 0.67 +0.1
2,487,214 + Ga0059261_2389 0.79 +0.6
2,487,215 - Ga0059261_2389 0.79 -1.2
2,487,215 - Ga0059261_2389 0.79 -0.3
2,487,215 - Ga0059261_2389 0.79 -1.2
2,487,223 + +0.4
2,487,223 + Ga0059261_2389 0.80 +1.2
2,487,223 + Ga0059261_2389 0.80 +0.1
2,487,223 + Ga0059261_2389 0.80 +0.5
2,487,223 + Ga0059261_2389 0.80 +1.0
2,487,223 + Ga0059261_2389 0.80 +0.7
2,487,223 + Ga0059261_2389 0.80 +0.2
2,487,224 - Ga0059261_2389 0.80 -2.2
2,487,224 - Ga0059261_2389 0.80 -0.8
2,487,536 + Ga0059261_2390 0.13 -0.2
2,487,536 + Ga0059261_2390 0.13 -0.2
2,487,536 + Ga0059261_2390 0.13 +0.3
2,487,536 + Ga0059261_2390 0.13 +0.2
2,487,536 + Ga0059261_2390 0.13 -0.7
2,487,536 + Ga0059261_2390 0.13 -1.5
2,487,536 + Ga0059261_2390 0.13 +0.3
2,487,536 + Ga0059261_2390 0.13 -0.5
2,487,536 + Ga0059261_2390 0.13 +0.5
2,487,537 - Ga0059261_2390 0.14 +0.6
2,487,537 - Ga0059261_2390 0.14 -0.6
2,487,537 - Ga0059261_2390 0.14 +0.6
2,487,537 - Ga0059261_2390 0.14 +1.0
2,487,537 - Ga0059261_2390 0.14 +2.1
2,487,537 - Ga0059261_2390 0.14 +0.2
2,487,537 - Ga0059261_2390 0.14 -0.5
2,487,867 - +0.6
2,487,924 + -0.1
2,487,924 + -0.2
2,487,924 + -1.2
2,487,925 - -0.8
2,488,013 - Ga0059261_2391 0.16 -0.6
2,488,013 - Ga0059261_2391 0.16 -0.6
2,488,345 + Ga0059261_2391 0.74 +1.4
2,488,532 + +0.6
2,488,760 + Ga0059261_2392 0.37 +0.4
2,489,048 + +0.1
2,489,048 + -0.1
2,489,049 - +0.1
2,489,096 + -1.0
2,489,096 + +0.2
2,489,097 - +0.2
2,489,303 + Ga0059261_2393 0.10 +0.7
2,489,304 - Ga0059261_2393 0.10 +0.2
2,489,304 - Ga0059261_2393 0.10 +0.4
2,489,309 + Ga0059261_2393 0.11 +0.0
2,489,309 + Ga0059261_2393 0.11 +1.2
2,489,309 + Ga0059261_2393 0.11 +0.0
2,489,309 + Ga0059261_2393 0.11 -0.9
2,489,309 + Ga0059261_2393 0.11 +0.1
2,489,309 + Ga0059261_2393 0.11 +1.7
2,489,309 + Ga0059261_2393 0.11 -0.6
2,489,309 + Ga0059261_2393 0.11 -1.5
2,489,310 - Ga0059261_2393 0.11 -0.1
2,489,310 - Ga0059261_2393 0.11 -0.6
2,489,310 - Ga0059261_2393 0.11 +0.1
2,489,310 - Ga0059261_2393 0.11 -0.1

Or see this region's nucleotide sequence