Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1886

Experiment: Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1884 and Ga0059261_1885 are separated by 322 nucleotidesGa0059261_1885 and Ga0059261_1886 overlap by 4 nucleotidesGa0059261_1886 and Ga0059261_1887 are separated by 2 nucleotidesGa0059261_1887 and Ga0059261_1888 overlap by 4 nucleotides Ga0059261_1884: Ga0059261_1884 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 1,993,625 to 1,994,734 _1884 Ga0059261_1885: Ga0059261_1885 - Predicted acetyltransferase, at 1,995,057 to 1,995,734 _1885 Ga0059261_1886: Ga0059261_1886 - phenazine biosynthesis protein PhzF family, at 1,995,731 to 1,996,522 _1886 Ga0059261_1887: Ga0059261_1887 - cation diffusion facilitator family transporter, at 1,996,525 to 1,997,442 _1887 Ga0059261_1888: Ga0059261_1888 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 1,997,439 to 1,998,029 _1888 Position (kb) 1995 1996 1997Strain fitness (log2 ratio) -2 -1 0 1 2at 1994.818 kb on + strandat 1994.819 kb on - strandat 1994.819 kb on - strandat 1994.819 kb on - strandat 1994.896 kb on - strandat 1994.896 kb on - strandat 1994.983 kb on + strandat 1994.983 kb on + strandat 1994.984 kb on - strandat 1994.984 kb on - strandat 1994.984 kb on - strandat 1994.984 kb on - strandat 1995.121 kb on + strandat 1995.122 kb on - strandat 1995.143 kb on + strand, within Ga0059261_1885at 1995.144 kb on - strand, within Ga0059261_1885at 1995.151 kb on + strand, within Ga0059261_1885at 1995.151 kb on + strand, within Ga0059261_1885at 1995.151 kb on + strand, within Ga0059261_1885at 1995.151 kb on + strand, within Ga0059261_1885at 1995.151 kb on + strand, within Ga0059261_1885at 1995.151 kb on + strandat 1995.151 kb on + strand, within Ga0059261_1885at 1995.151 kb on + strand, within Ga0059261_1885at 1995.151 kb on + strand, within Ga0059261_1885at 1995.151 kb on + strand, within Ga0059261_1885at 1995.151 kb on + strand, within Ga0059261_1885at 1995.151 kb on + strand, within Ga0059261_1885at 1995.151 kb on + strand, within Ga0059261_1885at 1995.151 kb on + strand, within Ga0059261_1885at 1995.151 kb on + strand, within Ga0059261_1885at 1995.151 kb on + strand, within Ga0059261_1885at 1995.151 kb on + strand, within Ga0059261_1885at 1995.151 kb on + strand, within Ga0059261_1885at 1995.152 kb on - strand, within Ga0059261_1885at 1995.152 kb on - strand, within Ga0059261_1885at 1995.152 kb on - strand, within Ga0059261_1885at 1995.152 kb on - strand, within Ga0059261_1885at 1995.152 kb on - strand, within Ga0059261_1885at 1995.152 kb on - strand, within Ga0059261_1885at 1995.152 kb on - strand, within Ga0059261_1885at 1995.152 kb on - strand, within Ga0059261_1885at 1995.152 kb on - strand, within Ga0059261_1885at 1995.152 kb on - strand, within Ga0059261_1885at 1995.152 kb on - strand, within Ga0059261_1885at 1995.152 kb on - strand, within Ga0059261_1885at 1995.152 kb on - strand, within Ga0059261_1885at 1995.152 kb on - strand, within Ga0059261_1885at 1995.152 kb on - strand, within Ga0059261_1885at 1995.152 kb on - strand, within Ga0059261_1885at 1995.439 kb on + strand, within Ga0059261_1885at 1995.439 kb on + strand, within Ga0059261_1885at 1995.440 kb on - strand, within Ga0059261_1885at 1995.440 kb on - strand, within Ga0059261_1885at 1995.440 kb on - strand, within Ga0059261_1885at 1995.440 kb on - strand, within Ga0059261_1885at 1995.813 kb on + strand, within Ga0059261_1886at 1995.814 kb on - strand, within Ga0059261_1886at 1995.876 kb on + strand, within Ga0059261_1886at 1995.876 kb on + strand, within Ga0059261_1886at 1995.877 kb on - strand, within Ga0059261_1886at 1995.877 kb on - strand, within Ga0059261_1886at 1995.877 kb on - strand, within Ga0059261_1886at 1996.077 kb on + strand, within Ga0059261_1886at 1996.077 kb on + strand, within Ga0059261_1886at 1996.077 kb on + strand, within Ga0059261_1886at 1996.077 kb on + strand, within Ga0059261_1886at 1996.077 kb on + strand, within Ga0059261_1886at 1996.077 kb on + strand, within Ga0059261_1886at 1996.078 kb on - strand, within Ga0059261_1886at 1996.078 kb on - strand, within Ga0059261_1886at 1996.078 kb on - strandat 1996.182 kb on + strand, within Ga0059261_1886at 1996.183 kb on - strand, within Ga0059261_1886at 1996.183 kb on - strand, within Ga0059261_1886at 1996.272 kb on + strand, within Ga0059261_1886at 1996.272 kb on + strand, within Ga0059261_1886at 1996.272 kb on + strand, within Ga0059261_1886at 1996.272 kb on + strand, within Ga0059261_1886at 1996.272 kb on + strand, within Ga0059261_1886at 1996.272 kb on + strand, within Ga0059261_1886at 1996.273 kb on - strandat 1996.273 kb on - strand, within Ga0059261_1886at 1996.273 kb on - strand, within Ga0059261_1886at 1996.273 kb on - strand, within Ga0059261_1886at 1996.879 kb on + strand, within Ga0059261_1887at 1996.879 kb on + strand, within Ga0059261_1887at 1996.879 kb on + strand, within Ga0059261_1887at 1996.880 kb on - strand, within Ga0059261_1887at 1996.880 kb on - strandat 1996.880 kb on - strand, within Ga0059261_1887at 1996.937 kb on + strand, within Ga0059261_1887at 1996.938 kb on - strand, within Ga0059261_1887at 1996.938 kb on - strand, within Ga0059261_1887at 1996.938 kb on - strand, within Ga0059261_1887at 1996.994 kb on + strand, within Ga0059261_1887at 1996.994 kb on + strand, within Ga0059261_1887at 1996.994 kb on + strand, within Ga0059261_1887at 1996.994 kb on + strand, within Ga0059261_1887at 1996.995 kb on - strand, within Ga0059261_1887at 1996.995 kb on - strand, within Ga0059261_1887at 1997.054 kb on + strand, within Ga0059261_1887at 1997.054 kb on + strand, within Ga0059261_1887at 1997.054 kb on + strand, within Ga0059261_1887at 1997.055 kb on - strand, within Ga0059261_1887at 1997.055 kb on - strand, within Ga0059261_1887at 1997.055 kb on - strand, within Ga0059261_1887at 1997.074 kb on + strand, within Ga0059261_1887at 1997.075 kb on - strand, within Ga0059261_1887

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
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1,994,818 + -1.2
1,994,819 - +1.4
1,994,819 - +0.4
1,994,819 - +0.8
1,994,896 - -0.6
1,994,896 - +1.4
1,994,983 + -0.1
1,994,983 + -0.3
1,994,984 - -0.4
1,994,984 - -0.0
1,994,984 - +0.3
1,994,984 - -0.3
1,995,121 + -0.8
1,995,122 - +1.6
1,995,143 + Ga0059261_1885 0.13 -0.8
1,995,144 - Ga0059261_1885 0.13 -0.4
1,995,151 + Ga0059261_1885 0.14 +0.9
1,995,151 + Ga0059261_1885 0.14 -0.5
1,995,151 + Ga0059261_1885 0.14 -0.4
1,995,151 + Ga0059261_1885 0.14 +0.1
1,995,151 + Ga0059261_1885 0.14 +0.2
1,995,151 + +0.4
1,995,151 + Ga0059261_1885 0.14 -0.3
1,995,151 + Ga0059261_1885 0.14 -0.2
1,995,151 + Ga0059261_1885 0.14 -0.6
1,995,151 + Ga0059261_1885 0.14 -0.4
1,995,151 + Ga0059261_1885 0.14 -0.2
1,995,151 + Ga0059261_1885 0.14 +0.1
1,995,151 + Ga0059261_1885 0.14 +0.0
1,995,151 + Ga0059261_1885 0.14 -0.6
1,995,151 + Ga0059261_1885 0.14 +0.1
1,995,151 + Ga0059261_1885 0.14 -1.1
1,995,151 + Ga0059261_1885 0.14 -0.4
1,995,151 + Ga0059261_1885 0.14 -0.4
1,995,152 - Ga0059261_1885 0.14 +0.5
1,995,152 - Ga0059261_1885 0.14 -1.1
1,995,152 - Ga0059261_1885 0.14 +0.2
1,995,152 - Ga0059261_1885 0.14 -0.2
1,995,152 - Ga0059261_1885 0.14 +0.7
1,995,152 - Ga0059261_1885 0.14 -1.6
1,995,152 - Ga0059261_1885 0.14 -0.3
1,995,152 - Ga0059261_1885 0.14 +0.1
1,995,152 - Ga0059261_1885 0.14 +0.4
1,995,152 - Ga0059261_1885 0.14 +0.2
1,995,152 - Ga0059261_1885 0.14 -0.2
1,995,152 - Ga0059261_1885 0.14 +0.5
1,995,152 - Ga0059261_1885 0.14 +1.6
1,995,152 - Ga0059261_1885 0.14 +0.3
1,995,152 - Ga0059261_1885 0.14 +0.9
1,995,152 - Ga0059261_1885 0.14 -0.2
1,995,439 + Ga0059261_1885 0.56 -0.3
1,995,439 + Ga0059261_1885 0.56 -0.1
1,995,440 - Ga0059261_1885 0.56 -1.4
1,995,440 - Ga0059261_1885 0.56 +0.0
1,995,440 - Ga0059261_1885 0.56 +0.6
1,995,440 - Ga0059261_1885 0.56 -0.7
1,995,813 + Ga0059261_1886 0.10 +0.4
1,995,814 - Ga0059261_1886 0.10 -1.1
1,995,876 + Ga0059261_1886 0.18 -0.0
1,995,876 + Ga0059261_1886 0.18 +0.4
1,995,877 - Ga0059261_1886 0.18 +0.4
1,995,877 - Ga0059261_1886 0.18 +0.5
1,995,877 - Ga0059261_1886 0.18 -0.6
1,996,077 + Ga0059261_1886 0.44 -0.6
1,996,077 + Ga0059261_1886 0.44 -0.3
1,996,077 + Ga0059261_1886 0.44 +0.3
1,996,077 + Ga0059261_1886 0.44 +1.0
1,996,077 + Ga0059261_1886 0.44 +0.4
1,996,077 + Ga0059261_1886 0.44 +1.4
1,996,078 - Ga0059261_1886 0.44 +0.1
1,996,078 - Ga0059261_1886 0.44 +0.8
1,996,078 - +0.4
1,996,182 + Ga0059261_1886 0.57 +0.4
1,996,183 - Ga0059261_1886 0.57 +0.6
1,996,183 - Ga0059261_1886 0.57 -0.6
1,996,272 + Ga0059261_1886 0.68 +0.8
1,996,272 + Ga0059261_1886 0.68 -1.4
1,996,272 + Ga0059261_1886 0.68 +0.2
1,996,272 + Ga0059261_1886 0.68 +0.8
1,996,272 + Ga0059261_1886 0.68 -0.5
1,996,272 + Ga0059261_1886 0.68 +0.1
1,996,273 - +0.9
1,996,273 - Ga0059261_1886 0.68 +0.4
1,996,273 - Ga0059261_1886 0.68 -1.8
1,996,273 - Ga0059261_1886 0.68 +1.7
1,996,879 + Ga0059261_1887 0.39 -0.6
1,996,879 + Ga0059261_1887 0.39 -0.2
1,996,879 + Ga0059261_1887 0.39 -0.2
1,996,880 - Ga0059261_1887 0.39 -0.2
1,996,880 - +1.4
1,996,880 - Ga0059261_1887 0.39 +1.9
1,996,937 + Ga0059261_1887 0.45 -0.1
1,996,938 - Ga0059261_1887 0.45 -1.2
1,996,938 - Ga0059261_1887 0.45 -1.8
1,996,938 - Ga0059261_1887 0.45 -0.3
1,996,994 + Ga0059261_1887 0.51 -0.8
1,996,994 + Ga0059261_1887 0.51 +0.0
1,996,994 + Ga0059261_1887 0.51 +0.2
1,996,994 + Ga0059261_1887 0.51 -0.0
1,996,995 - Ga0059261_1887 0.51 -0.0
1,996,995 - Ga0059261_1887 0.51 -0.2
1,997,054 + Ga0059261_1887 0.58 +0.9
1,997,054 + Ga0059261_1887 0.58 -0.5
1,997,054 + Ga0059261_1887 0.58 -0.8
1,997,055 - Ga0059261_1887 0.58 +0.4
1,997,055 - Ga0059261_1887 0.58 +0.1
1,997,055 - Ga0059261_1887 0.58 -0.1
1,997,074 + Ga0059261_1887 0.60 -0.8
1,997,075 - Ga0059261_1887 0.60 +0.2

Or see this region's nucleotide sequence