Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1759

Experiment: Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1758 and Ga0059261_1759 overlap by 4 nucleotidesGa0059261_1759 and Ga0059261_1760 are separated by 119 nucleotidesGa0059261_1760 and Ga0059261_1761 are separated by 63 nucleotides Ga0059261_1758: Ga0059261_1758 - hypothetical protein, at 1,863,522 to 1,866,845 _1758 Ga0059261_1759: Ga0059261_1759 - Phosphoadenosine phosphosulfate reductase family, at 1,866,842 to 1,867,672 _1759 Ga0059261_1760: Ga0059261_1760 - hypothetical protein, at 1,867,792 to 1,868,268 _1760 Ga0059261_1761: Ga0059261_1761 - hypothetical protein, at 1,868,332 to 1,868,637 _1761 Position (kb) 1866 1867 1868Strain fitness (log2 ratio) -1 0 1 2at 1865.868 kb on + strand, within Ga0059261_1758at 1865.868 kb on + strand, within Ga0059261_1758at 1865.869 kb on - strand, within Ga0059261_1758at 1865.963 kb on + strand, within Ga0059261_1758at 1866.177 kb on - strand, within Ga0059261_1758at 1866.181 kb on + strand, within Ga0059261_1758at 1866.938 kb on + strand, within Ga0059261_1759at 1866.939 kb on - strand, within Ga0059261_1759at 1866.978 kb on - strand, within Ga0059261_1759at 1866.978 kb on - strand, within Ga0059261_1759at 1866.984 kb on - strand, within Ga0059261_1759at 1866.984 kb on - strand, within Ga0059261_1759at 1867.182 kb on - strand, within Ga0059261_1759at 1867.331 kb on + strand, within Ga0059261_1759at 1867.331 kb on + strand, within Ga0059261_1759at 1867.670 kb on + strandat 1867.670 kb on + strandat 1867.670 kb on + strandat 1867.670 kb on + strandat 1867.670 kb on + strandat 1867.670 kb on + strandat 1867.670 kb on + strandat 1867.671 kb on - strandat 1867.671 kb on - strandat 1867.671 kb on - strandat 1867.671 kb on - strandat 1867.671 kb on - strandat 1867.671 kb on - strandat 1867.671 kb on - strandat 1867.671 kb on - strandat 1867.671 kb on - strandat 1867.695 kb on + strandat 1867.695 kb on + strandat 1867.695 kb on + strandat 1867.695 kb on + strandat 1867.696 kb on - strandat 1867.696 kb on - strandat 1867.696 kb on - strandat 1867.696 kb on - strandat 1867.696 kb on - strandat 1867.696 kb on - strandat 1867.696 kb on - strandat 1867.696 kb on - strandat 1867.700 kb on - strandat 1867.700 kb on - strandat 1867.700 kb on - strandat 1867.700 kb on - strandat 1867.736 kb on + strandat 1867.736 kb on + strandat 1867.770 kb on + strandat 1867.770 kb on + strandat 1867.771 kb on - strandat 1867.771 kb on - strandat 1867.771 kb on - strandat 1867.951 kb on + strand, within Ga0059261_1760at 1867.951 kb on + strand, within Ga0059261_1760at 1867.951 kb on + strand, within Ga0059261_1760at 1867.951 kb on + strand, within Ga0059261_1760at 1867.951 kb on + strandat 1867.951 kb on + strand, within Ga0059261_1760at 1867.952 kb on - strand, within Ga0059261_1760at 1867.952 kb on - strand, within Ga0059261_1760at 1867.952 kb on - strand, within Ga0059261_1760at 1867.952 kb on - strand, within Ga0059261_1760at 1868.001 kb on - strandat 1868.002 kb on + strand, within Ga0059261_1760at 1868.002 kb on + strand, within Ga0059261_1760at 1868.002 kb on + strand, within Ga0059261_1760at 1868.002 kb on + strand, within Ga0059261_1760at 1868.002 kb on + strand, within Ga0059261_1760at 1868.002 kb on + strand, within Ga0059261_1760at 1868.002 kb on + strand, within Ga0059261_1760at 1868.002 kb on + strand, within Ga0059261_1760at 1868.002 kb on + strand, within Ga0059261_1760at 1868.002 kb on + strand, within Ga0059261_1760at 1868.003 kb on - strand, within Ga0059261_1760at 1868.003 kb on - strand, within Ga0059261_1760at 1868.003 kb on - strand, within Ga0059261_1760at 1868.003 kb on - strand, within Ga0059261_1760at 1868.003 kb on - strand, within Ga0059261_1760at 1868.004 kb on + strandat 1868.005 kb on - strand, within Ga0059261_1760at 1868.005 kb on - strand, within Ga0059261_1760at 1868.093 kb on + strand, within Ga0059261_1760at 1868.102 kb on + strand, within Ga0059261_1760at 1868.102 kb on + strand, within Ga0059261_1760at 1868.102 kb on + strand, within Ga0059261_1760at 1868.103 kb on - strand, within Ga0059261_1760at 1868.103 kb on - strand, within Ga0059261_1760at 1868.103 kb on - strand, within Ga0059261_1760at 1868.103 kb on - strand, within Ga0059261_1760at 1868.103 kb on - strand, within Ga0059261_1760at 1868.179 kb on + strand, within Ga0059261_1760at 1868.179 kb on + strand, within Ga0059261_1760at 1868.179 kb on + strand, within Ga0059261_1760at 1868.179 kb on + strand, within Ga0059261_1760at 1868.179 kb on + strand, within Ga0059261_1760at 1868.179 kb on + strand, within Ga0059261_1760at 1868.179 kb on + strand, within Ga0059261_1760at 1868.179 kb on + strand, within Ga0059261_1760at 1868.179 kb on + strand, within Ga0059261_1760at 1868.179 kb on + strand, within Ga0059261_1760at 1868.179 kb on + strand, within Ga0059261_1760at 1868.179 kb on + strand, within Ga0059261_1760at 1868.179 kb on + strand, within Ga0059261_1760at 1868.179 kb on + strand, within Ga0059261_1760at 1868.179 kb on + strand, within Ga0059261_1760at 1868.179 kb on + strand, within Ga0059261_1760at 1868.180 kb on - strand, within Ga0059261_1760at 1868.180 kb on - strand, within Ga0059261_1760at 1868.180 kb on - strand, within Ga0059261_1760at 1868.180 kb on - strand, within Ga0059261_1760at 1868.180 kb on - strand, within Ga0059261_1760at 1868.180 kb on - strand, within Ga0059261_1760at 1868.180 kb on - strand, within Ga0059261_1760at 1868.180 kb on - strand, within Ga0059261_1760at 1868.180 kb on - strand, within Ga0059261_1760at 1868.182 kb on - strand, within Ga0059261_1760at 1868.266 kb on + strandat 1868.266 kb on + strandat 1868.267 kb on - strandat 1868.267 kb on - strandat 1868.267 kb on - strandat 1868.267 kb on - strandat 1868.275 kb on + strandat 1868.275 kb on + strandat 1868.302 kb on + strandat 1868.302 kb on + strandat 1868.303 kb on - strandat 1868.353 kb on + strandat 1868.353 kb on + strandat 1868.353 kb on + strandat 1868.353 kb on + strandat 1868.353 kb on + strandat 1868.353 kb on + strandat 1868.353 kb on + strandat 1868.353 kb on + strandat 1868.353 kb on + strandat 1868.354 kb on - strandat 1868.354 kb on - strandat 1868.354 kb on - strandat 1868.354 kb on - strandat 1868.402 kb on + strandat 1868.402 kb on + strand, within Ga0059261_1761at 1868.402 kb on + strand, within Ga0059261_1761at 1868.402 kb on + strand, within Ga0059261_1761at 1868.403 kb on - strand, within Ga0059261_1761at 1868.422 kb on + strand, within Ga0059261_1761at 1868.422 kb on + strand, within Ga0059261_1761at 1868.423 kb on - strand, within Ga0059261_1761at 1868.423 kb on - strand, within Ga0059261_1761at 1868.423 kb on - strand, within Ga0059261_1761at 1868.423 kb on - strand, within Ga0059261_1761at 1868.448 kb on - strand, within Ga0059261_1761at 1868.472 kb on + strand, within Ga0059261_1761at 1868.472 kb on + strand, within Ga0059261_1761at 1868.473 kb on - strand, within Ga0059261_1761at 1868.473 kb on - strand, within Ga0059261_1761at 1868.473 kb on - strandat 1868.540 kb on + strand, within Ga0059261_1761at 1868.540 kb on + strand, within Ga0059261_1761at 1868.540 kb on + strandat 1868.540 kb on + strandat 1868.540 kb on + strand, within Ga0059261_1761at 1868.540 kb on + strand, within Ga0059261_1761at 1868.540 kb on + strand, within Ga0059261_1761at 1868.541 kb on - strand, within Ga0059261_1761at 1868.541 kb on - strand, within Ga0059261_1761at 1868.541 kb on - strand, within Ga0059261_1761at 1868.541 kb on - strand, within Ga0059261_1761at 1868.541 kb on - strand, within Ga0059261_1761at 1868.541 kb on - strand, within Ga0059261_1761at 1868.590 kb on + strand, within Ga0059261_1761at 1868.590 kb on + strand, within Ga0059261_1761at 1868.590 kb on + strand, within Ga0059261_1761at 1868.590 kb on + strand, within Ga0059261_1761at 1868.590 kb on + strand, within Ga0059261_1761at 1868.591 kb on - strand, within Ga0059261_1761at 1868.591 kb on - strand, within Ga0059261_1761at 1868.591 kb on - strand, within Ga0059261_1761at 1868.591 kb on - strand, within Ga0059261_1761at 1868.591 kb on - strand, within Ga0059261_1761at 1868.591 kb on - strand, within Ga0059261_1761at 1868.591 kb on - strand, within Ga0059261_1761at 1868.613 kb on + strandat 1868.614 kb on - strandat 1868.654 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
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1,865,868 + Ga0059261_1758 0.71 +0.2
1,865,868 + Ga0059261_1758 0.71 -1.1
1,865,869 - Ga0059261_1758 0.71 +0.2
1,865,963 + Ga0059261_1758 0.73 +0.2
1,866,177 - Ga0059261_1758 0.80 +1.1
1,866,181 + Ga0059261_1758 0.80 -0.0
1,866,938 + Ga0059261_1759 0.12 +1.4
1,866,939 - Ga0059261_1759 0.12 +0.3
1,866,978 - Ga0059261_1759 0.16 +0.9
1,866,978 - Ga0059261_1759 0.16 -0.3
1,866,984 - Ga0059261_1759 0.17 +0.1
1,866,984 - Ga0059261_1759 0.17 +0.7
1,867,182 - Ga0059261_1759 0.41 +1.1
1,867,331 + Ga0059261_1759 0.59 -0.3
1,867,331 + Ga0059261_1759 0.59 -0.9
1,867,670 + -0.4
1,867,670 + +1.6
1,867,670 + -0.5
1,867,670 + -0.3
1,867,670 + -0.1
1,867,670 + -0.2
1,867,670 + -1.3
1,867,671 - -1.6
1,867,671 - +0.4
1,867,671 - -0.3
1,867,671 - -0.6
1,867,671 - -0.9
1,867,671 - +0.4
1,867,671 - -0.5
1,867,671 - -0.6
1,867,671 - +1.1
1,867,695 + +0.2
1,867,695 + +0.2
1,867,695 + -0.3
1,867,695 + +0.2
1,867,696 - -0.7
1,867,696 - -0.1
1,867,696 - +0.5
1,867,696 - -1.3
1,867,696 - -0.3
1,867,696 - -0.6
1,867,696 - -0.1
1,867,696 - +0.0
1,867,700 - -1.1
1,867,700 - -0.1
1,867,700 - -0.3
1,867,700 - +0.7
1,867,736 + +1.0
1,867,736 + -1.3
1,867,770 + -0.2
1,867,770 + -0.0
1,867,771 - +0.2
1,867,771 - -0.4
1,867,771 - -0.2
1,867,951 + Ga0059261_1760 0.33 +0.0
1,867,951 + Ga0059261_1760 0.33 +1.5
1,867,951 + Ga0059261_1760 0.33 +0.9
1,867,951 + Ga0059261_1760 0.33 +0.3
1,867,951 + +1.3
1,867,951 + Ga0059261_1760 0.33 -1.0
1,867,952 - Ga0059261_1760 0.34 +0.4
1,867,952 - Ga0059261_1760 0.34 -1.7
1,867,952 - Ga0059261_1760 0.34 +0.1
1,867,952 - Ga0059261_1760 0.34 +2.0
1,868,001 - -0.7
1,868,002 + Ga0059261_1760 0.44 -0.0
1,868,002 + Ga0059261_1760 0.44 +0.1
1,868,002 + Ga0059261_1760 0.44 -0.3
1,868,002 + Ga0059261_1760 0.44 +0.0
1,868,002 + Ga0059261_1760 0.44 -1.3
1,868,002 + Ga0059261_1760 0.44 -0.6
1,868,002 + Ga0059261_1760 0.44 +0.1
1,868,002 + Ga0059261_1760 0.44 -0.9
1,868,002 + Ga0059261_1760 0.44 +0.8
1,868,002 + Ga0059261_1760 0.44 -0.3
1,868,003 - Ga0059261_1760 0.44 +1.0
1,868,003 - Ga0059261_1760 0.44 -0.1
1,868,003 - Ga0059261_1760 0.44 -0.1
1,868,003 - Ga0059261_1760 0.44 +0.2
1,868,003 - Ga0059261_1760 0.44 +0.7
1,868,004 + +1.3
1,868,005 - Ga0059261_1760 0.45 -0.7
1,868,005 - Ga0059261_1760 0.45 -0.2
1,868,093 + Ga0059261_1760 0.63 +1.1
1,868,102 + Ga0059261_1760 0.65 +0.1
1,868,102 + Ga0059261_1760 0.65 +0.3
1,868,102 + Ga0059261_1760 0.65 +0.4
1,868,103 - Ga0059261_1760 0.65 +0.1
1,868,103 - Ga0059261_1760 0.65 -0.0
1,868,103 - Ga0059261_1760 0.65 +0.4
1,868,103 - Ga0059261_1760 0.65 +0.8
1,868,103 - Ga0059261_1760 0.65 -0.7
1,868,179 + Ga0059261_1760 0.81 -0.2
1,868,179 + Ga0059261_1760 0.81 -0.7
1,868,179 + Ga0059261_1760 0.81 -1.5
1,868,179 + Ga0059261_1760 0.81 +0.1
1,868,179 + Ga0059261_1760 0.81 -1.1
1,868,179 + Ga0059261_1760 0.81 -0.0
1,868,179 + Ga0059261_1760 0.81 +0.2
1,868,179 + Ga0059261_1760 0.81 -0.2
1,868,179 + Ga0059261_1760 0.81 -0.5
1,868,179 + Ga0059261_1760 0.81 +0.6
1,868,179 + Ga0059261_1760 0.81 -0.4
1,868,179 + Ga0059261_1760 0.81 -0.7
1,868,179 + Ga0059261_1760 0.81 -0.2
1,868,179 + Ga0059261_1760 0.81 -0.1
1,868,179 + Ga0059261_1760 0.81 +0.2
1,868,179 + Ga0059261_1760 0.81 +0.4
1,868,180 - Ga0059261_1760 0.81 -0.2
1,868,180 - Ga0059261_1760 0.81 -0.8
1,868,180 - Ga0059261_1760 0.81 -0.1
1,868,180 - Ga0059261_1760 0.81 -0.9
1,868,180 - Ga0059261_1760 0.81 +0.1
1,868,180 - Ga0059261_1760 0.81 -0.5
1,868,180 - Ga0059261_1760 0.81 +0.1
1,868,180 - Ga0059261_1760 0.81 -0.4
1,868,180 - Ga0059261_1760 0.81 -0.5
1,868,182 - Ga0059261_1760 0.82 -0.1
1,868,266 + -0.9
1,868,266 + -0.1
1,868,267 - -0.7
1,868,267 - -0.6
1,868,267 - -0.3
1,868,267 - -0.3
1,868,275 + +0.0
1,868,275 + -0.9
1,868,302 + -0.1
1,868,302 + -0.4
1,868,303 - +0.1
1,868,353 + +1.7
1,868,353 + +0.6
1,868,353 + -0.1
1,868,353 + -1.1
1,868,353 + -0.0
1,868,353 + +0.9
1,868,353 + -0.3
1,868,353 + +1.0
1,868,353 + +0.3
1,868,354 - +0.3
1,868,354 - -1.0
1,868,354 - -1.3
1,868,354 - -0.7
1,868,402 + -1.3
1,868,402 + Ga0059261_1761 0.23 +0.2
1,868,402 + Ga0059261_1761 0.23 -0.6
1,868,402 + Ga0059261_1761 0.23 +0.5
1,868,403 - Ga0059261_1761 0.23 -0.9
1,868,422 + Ga0059261_1761 0.29 -0.1
1,868,422 + Ga0059261_1761 0.29 -0.0
1,868,423 - Ga0059261_1761 0.30 +0.9
1,868,423 - Ga0059261_1761 0.30 -0.1
1,868,423 - Ga0059261_1761 0.30 +0.5
1,868,423 - Ga0059261_1761 0.30 -0.5
1,868,448 - Ga0059261_1761 0.38 -0.2
1,868,472 + Ga0059261_1761 0.46 +0.8
1,868,472 + Ga0059261_1761 0.46 -0.0
1,868,473 - Ga0059261_1761 0.46 -0.6
1,868,473 - Ga0059261_1761 0.46 -0.1
1,868,473 - -0.3
1,868,540 + Ga0059261_1761 0.68 -0.6
1,868,540 + Ga0059261_1761 0.68 +0.0
1,868,540 + +1.3
1,868,540 + +0.7
1,868,540 + Ga0059261_1761 0.68 +0.7
1,868,540 + Ga0059261_1761 0.68 -0.5
1,868,540 + Ga0059261_1761 0.68 -0.5
1,868,541 - Ga0059261_1761 0.68 +0.6
1,868,541 - Ga0059261_1761 0.68 +1.9
1,868,541 - Ga0059261_1761 0.68 -0.9
1,868,541 - Ga0059261_1761 0.68 +0.1
1,868,541 - Ga0059261_1761 0.68 -1.0
1,868,541 - Ga0059261_1761 0.68 -0.5
1,868,590 + Ga0059261_1761 0.84 -0.4
1,868,590 + Ga0059261_1761 0.84 +0.3
1,868,590 + Ga0059261_1761 0.84 +0.7
1,868,590 + Ga0059261_1761 0.84 -0.2
1,868,590 + Ga0059261_1761 0.84 -0.5
1,868,591 - Ga0059261_1761 0.85 -0.1
1,868,591 - Ga0059261_1761 0.85 +0.1
1,868,591 - Ga0059261_1761 0.85 +0.5
1,868,591 - Ga0059261_1761 0.85 +0.8
1,868,591 - Ga0059261_1761 0.85 +0.0
1,868,591 - Ga0059261_1761 0.85 +0.0
1,868,591 - Ga0059261_1761 0.85 -0.6
1,868,613 + -0.4
1,868,614 - +0.4
1,868,654 - -0.6

Or see this region's nucleotide sequence