Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1610

Experiment: Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1608 and Ga0059261_1609 overlap by 8 nucleotidesGa0059261_1609 and Ga0059261_1610 are separated by 8 nucleotidesGa0059261_1610 and Ga0059261_1611 overlap by 4 nucleotides Ga0059261_1608: Ga0059261_1608 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 1,684,993 to 1,686,006 _1608 Ga0059261_1609: Ga0059261_1609 - probable rRNA maturation factor YbeY, at 1,685,999 to 1,686,508 _1609 Ga0059261_1610: Ga0059261_1610 - CBS domain/Transporter associated domain, at 1,686,517 to 1,687,434 _1610 Ga0059261_1611: Ga0059261_1611 - Glucose/sorbosone dehydrogenases, at 1,687,431 to 1,688,822 _1611 Position (kb) 1686 1687 1688Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1685.614 kb on + strand, within Ga0059261_1608at 1685.614 kb on + strand, within Ga0059261_1608at 1685.614 kb on + strand, within Ga0059261_1608at 1685.614 kb on + strand, within Ga0059261_1608at 1685.626 kb on + strand, within Ga0059261_1608at 1685.626 kb on + strand, within Ga0059261_1608at 1685.913 kb on + strandat 1685.977 kb on + strandat 1685.977 kb on + strandat 1685.977 kb on + strandat 1686.488 kb on + strandat 1686.488 kb on + strandat 1686.489 kb on - strandat 1686.489 kb on - strandat 1686.495 kb on + strandat 1686.496 kb on - strandat 1686.535 kb on - strandat 1686.555 kb on + strandat 1686.555 kb on + strandat 1686.555 kb on + strandat 1686.556 kb on - strandat 1686.556 kb on - strandat 1686.556 kb on - strandat 1686.572 kb on + strandat 1686.572 kb on + strandat 1686.572 kb on + strandat 1686.572 kb on + strandat 1686.572 kb on + strandat 1686.612 kb on + strand, within Ga0059261_1610at 1686.612 kb on + strandat 1686.613 kb on - strand, within Ga0059261_1610at 1686.866 kb on - strand, within Ga0059261_1610at 1686.982 kb on + strand, within Ga0059261_1610at 1686.982 kb on + strand, within Ga0059261_1610at 1686.982 kb on + strand, within Ga0059261_1610at 1686.982 kb on + strand, within Ga0059261_1610at 1686.982 kb on + strand, within Ga0059261_1610at 1686.982 kb on + strand, within Ga0059261_1610at 1686.983 kb on - strand, within Ga0059261_1610at 1686.983 kb on - strand, within Ga0059261_1610at 1687.066 kb on + strand, within Ga0059261_1610at 1687.067 kb on - strand, within Ga0059261_1610at 1687.067 kb on - strand, within Ga0059261_1610at 1687.263 kb on + strand, within Ga0059261_1610at 1687.263 kb on + strand, within Ga0059261_1610at 1687.264 kb on - strand, within Ga0059261_1610at 1687.264 kb on - strand, within Ga0059261_1610at 1687.495 kb on - strandat 1687.495 kb on - strandat 1687.495 kb on - strandat 1687.495 kb on - strandat 1687.495 kb on - strandat 1687.495 kb on - strandat 1687.495 kb on - strandat 1687.676 kb on + strand, within Ga0059261_1611at 1687.676 kb on + strand, within Ga0059261_1611at 1687.677 kb on - strand, within Ga0059261_1611at 1687.677 kb on - strand, within Ga0059261_1611at 1687.705 kb on - strandat 1687.705 kb on - strand, within Ga0059261_1611at 1687.763 kb on + strand, within Ga0059261_1611at 1687.764 kb on - strand, within Ga0059261_1611at 1687.764 kb on - strand, within Ga0059261_1611at 1687.953 kb on + strand, within Ga0059261_1611at 1687.953 kb on + strand, within Ga0059261_1611at 1687.953 kb on + strand, within Ga0059261_1611at 1687.954 kb on - strand, within Ga0059261_1611at 1687.954 kb on - strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strandat 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.256 kb on - strand, within Ga0059261_1611at 1688.319 kb on + strand, within Ga0059261_1611at 1688.319 kb on + strand, within Ga0059261_1611at 1688.319 kb on + strand, within Ga0059261_1611at 1688.320 kb on - strand, within Ga0059261_1611at 1688.320 kb on - strand, within Ga0059261_1611at 1688.320 kb on - strandat 1688.349 kb on + strand, within Ga0059261_1611at 1688.349 kb on + strand, within Ga0059261_1611at 1688.349 kb on + strand, within Ga0059261_1611at 1688.349 kb on + strand, within Ga0059261_1611at 1688.349 kb on + strand, within Ga0059261_1611at 1688.349 kb on + strand, within Ga0059261_1611at 1688.349 kb on + strand, within Ga0059261_1611at 1688.349 kb on + strand, within Ga0059261_1611at 1688.350 kb on - strand, within Ga0059261_1611at 1688.350 kb on - strand, within Ga0059261_1611at 1688.350 kb on - strand, within Ga0059261_1611at 1688.350 kb on - strand, within Ga0059261_1611at 1688.367 kb on + strand, within Ga0059261_1611at 1688.367 kb on + strand, within Ga0059261_1611at 1688.368 kb on - strand, within Ga0059261_1611at 1688.379 kb on + strand, within Ga0059261_1611at 1688.380 kb on - strand, within Ga0059261_1611at 1688.424 kb on + strand, within Ga0059261_1611at 1688.424 kb on + strand, within Ga0059261_1611at 1688.424 kb on + strand, within Ga0059261_1611at 1688.424 kb on + strand, within Ga0059261_1611at 1688.424 kb on + strand, within Ga0059261_1611at 1688.425 kb on - strand, within Ga0059261_1611at 1688.425 kb on - strand, within Ga0059261_1611at 1688.426 kb on + strand, within Ga0059261_1611at 1688.427 kb on - strand, within Ga0059261_1611

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
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1,685,614 + Ga0059261_1608 0.61 -1.9
1,685,614 + Ga0059261_1608 0.61 +1.0
1,685,614 + Ga0059261_1608 0.61 +0.3
1,685,614 + Ga0059261_1608 0.61 -0.7
1,685,626 + Ga0059261_1608 0.62 -0.5
1,685,626 + Ga0059261_1608 0.62 +0.6
1,685,913 + +0.7
1,685,977 + +0.2
1,685,977 + +0.3
1,685,977 + +0.2
1,686,488 + +0.2
1,686,488 + +0.4
1,686,489 - +0.6
1,686,489 - +0.7
1,686,495 + -1.0
1,686,496 - -0.0
1,686,535 - +0.0
1,686,555 + +0.5
1,686,555 + +0.4
1,686,555 + +0.8
1,686,556 - +0.5
1,686,556 - +0.1
1,686,556 - -0.5
1,686,572 + -0.5
1,686,572 + -3.7
1,686,572 + +0.3
1,686,572 + -0.2
1,686,572 + +0.2
1,686,612 + Ga0059261_1610 0.10 +0.5
1,686,612 + +3.3
1,686,613 - Ga0059261_1610 0.10 -0.5
1,686,866 - Ga0059261_1610 0.38 +0.8
1,686,982 + Ga0059261_1610 0.51 +0.1
1,686,982 + Ga0059261_1610 0.51 +0.5
1,686,982 + Ga0059261_1610 0.51 +0.4
1,686,982 + Ga0059261_1610 0.51 +0.0
1,686,982 + Ga0059261_1610 0.51 +0.3
1,686,982 + Ga0059261_1610 0.51 +1.0
1,686,983 - Ga0059261_1610 0.51 -0.3
1,686,983 - Ga0059261_1610 0.51 -0.4
1,687,066 + Ga0059261_1610 0.60 +0.2
1,687,067 - Ga0059261_1610 0.60 -0.5
1,687,067 - Ga0059261_1610 0.60 +0.4
1,687,263 + Ga0059261_1610 0.81 +0.6
1,687,263 + Ga0059261_1610 0.81 +0.5
1,687,264 - Ga0059261_1610 0.81 +1.0
1,687,264 - Ga0059261_1610 0.81 -0.2
1,687,495 - +0.4
1,687,495 - -0.7
1,687,495 - +0.3
1,687,495 - +0.2
1,687,495 - -0.4
1,687,495 - -0.3
1,687,495 - +0.1
1,687,676 + Ga0059261_1611 0.18 -0.2
1,687,676 + Ga0059261_1611 0.18 -1.2
1,687,677 - Ga0059261_1611 0.18 -0.3
1,687,677 - Ga0059261_1611 0.18 -0.7
1,687,705 - +0.9
1,687,705 - Ga0059261_1611 0.20 +0.3
1,687,763 + Ga0059261_1611 0.24 -1.3
1,687,764 - Ga0059261_1611 0.24 +1.0
1,687,764 - Ga0059261_1611 0.24 -0.9
1,687,953 + Ga0059261_1611 0.38 -0.7
1,687,953 + Ga0059261_1611 0.38 +0.2
1,687,953 + Ga0059261_1611 0.38 +0.4
1,687,954 - Ga0059261_1611 0.38 +0.8
1,687,954 - Ga0059261_1611 0.38 -0.1
1,688,100 + Ga0059261_1611 0.48 -1.2
1,688,100 + Ga0059261_1611 0.48 +2.2
1,688,100 + Ga0059261_1611 0.48 -0.0
1,688,100 + Ga0059261_1611 0.48 +0.5
1,688,100 + Ga0059261_1611 0.48 -0.3
1,688,100 + Ga0059261_1611 0.48 -0.6
1,688,100 + Ga0059261_1611 0.48 +0.2
1,688,100 + Ga0059261_1611 0.48 -0.3
1,688,100 + Ga0059261_1611 0.48 +0.2
1,688,100 + Ga0059261_1611 0.48 +0.3
1,688,100 + Ga0059261_1611 0.48 -0.6
1,688,100 + Ga0059261_1611 0.48 +0.4
1,688,101 - Ga0059261_1611 0.48 -0.9
1,688,101 - -0.7
1,688,101 - Ga0059261_1611 0.48 -0.1
1,688,101 - Ga0059261_1611 0.48 -0.4
1,688,101 - Ga0059261_1611 0.48 +0.4
1,688,101 - Ga0059261_1611 0.48 -0.1
1,688,101 - Ga0059261_1611 0.48 +0.3
1,688,101 - Ga0059261_1611 0.48 +0.6
1,688,101 - Ga0059261_1611 0.48 -0.4
1,688,101 - Ga0059261_1611 0.48 -0.1
1,688,101 - Ga0059261_1611 0.48 -0.4
1,688,101 - Ga0059261_1611 0.48 -0.4
1,688,101 - Ga0059261_1611 0.48 -0.1
1,688,101 - Ga0059261_1611 0.48 -1.1
1,688,256 - Ga0059261_1611 0.59 +1.0
1,688,319 + Ga0059261_1611 0.64 +0.4
1,688,319 + Ga0059261_1611 0.64 -0.5
1,688,319 + Ga0059261_1611 0.64 +0.5
1,688,320 - Ga0059261_1611 0.64 -0.2
1,688,320 - Ga0059261_1611 0.64 +1.1
1,688,320 - -0.3
1,688,349 + Ga0059261_1611 0.66 +0.7
1,688,349 + Ga0059261_1611 0.66 -0.9
1,688,349 + Ga0059261_1611 0.66 -0.4
1,688,349 + Ga0059261_1611 0.66 -1.6
1,688,349 + Ga0059261_1611 0.66 -0.3
1,688,349 + Ga0059261_1611 0.66 -0.4
1,688,349 + Ga0059261_1611 0.66 -1.0
1,688,349 + Ga0059261_1611 0.66 +1.6
1,688,350 - Ga0059261_1611 0.66 +1.3
1,688,350 - Ga0059261_1611 0.66 +0.6
1,688,350 - Ga0059261_1611 0.66 +0.3
1,688,350 - Ga0059261_1611 0.66 -1.5
1,688,367 + Ga0059261_1611 0.67 +0.7
1,688,367 + Ga0059261_1611 0.67 +0.5
1,688,368 - Ga0059261_1611 0.67 +1.3
1,688,379 + Ga0059261_1611 0.68 -0.2
1,688,380 - Ga0059261_1611 0.68 +0.6
1,688,424 + Ga0059261_1611 0.71 -0.4
1,688,424 + Ga0059261_1611 0.71 -0.3
1,688,424 + Ga0059261_1611 0.71 +1.3
1,688,424 + Ga0059261_1611 0.71 +0.1
1,688,424 + Ga0059261_1611 0.71 -1.6
1,688,425 - Ga0059261_1611 0.71 -0.7
1,688,425 - Ga0059261_1611 0.71 +0.7
1,688,426 + Ga0059261_1611 0.71 -0.1
1,688,427 - Ga0059261_1611 0.72 -0.4

Or see this region's nucleotide sequence