Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1555

Experiment: Chlorite 1.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_1554 and Ga0059261_1555 are separated by 69 nucleotidesGa0059261_1555 and Ga0059261_1556 are separated by 14 nucleotidesGa0059261_1556 and Ga0059261_1557 overlap by 4 nucleotides Ga0059261_1554: Ga0059261_1554 - autotransporter-associated beta strand repeat, at 1,624,858 to 1,628,418 _1554 Ga0059261_1555: Ga0059261_1555 - hypothetical protein, at 1,628,488 to 1,628,925 _1555 Ga0059261_1556: Ga0059261_1556 - Predicted phosphohydrolases, at 1,628,940 to 1,629,695 _1556 Ga0059261_1557: Ga0059261_1557 - Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase, at 1,629,692 to 1,630,519 _1557 Position (kb) 1628 1629Strain fitness (log2 ratio) -2 -1 0 1 2at 1627.501 kb on + strand, within Ga0059261_1554at 1627.501 kb on + strand, within Ga0059261_1554at 1627.501 kb on + strand, within Ga0059261_1554at 1627.501 kb on + strand, within Ga0059261_1554at 1627.501 kb on + strand, within Ga0059261_1554at 1627.501 kb on + strand, within Ga0059261_1554at 1627.502 kb on - strand, within Ga0059261_1554at 1627.502 kb on - strand, within Ga0059261_1554at 1627.502 kb on - strand, within Ga0059261_1554at 1627.603 kb on + strand, within Ga0059261_1554at 1627.603 kb on + strand, within Ga0059261_1554at 1627.603 kb on + strand, within Ga0059261_1554at 1627.603 kb on + strand, within Ga0059261_1554at 1627.603 kb on + strand, within Ga0059261_1554at 1627.603 kb on + strand, within Ga0059261_1554at 1627.604 kb on - strand, within Ga0059261_1554at 1627.604 kb on - strand, within Ga0059261_1554at 1627.604 kb on - strand, within Ga0059261_1554at 1627.604 kb on - strandat 1627.618 kb on + strand, within Ga0059261_1554at 1627.618 kb on + strand, within Ga0059261_1554at 1627.690 kb on + strand, within Ga0059261_1554at 1627.690 kb on + strand, within Ga0059261_1554at 1627.690 kb on + strand, within Ga0059261_1554at 1627.690 kb on + strand, within Ga0059261_1554at 1627.690 kb on + strand, within Ga0059261_1554at 1627.690 kb on + strand, within Ga0059261_1554at 1627.690 kb on + strand, within Ga0059261_1554at 1627.690 kb on + strand, within Ga0059261_1554at 1627.690 kb on + strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.691 kb on - strand, within Ga0059261_1554at 1627.753 kb on + strand, within Ga0059261_1554at 1627.754 kb on - strand, within Ga0059261_1554at 1627.822 kb on + strand, within Ga0059261_1554at 1627.822 kb on + strand, within Ga0059261_1554at 1627.822 kb on + strand, within Ga0059261_1554at 1627.823 kb on - strand, within Ga0059261_1554at 1627.823 kb on - strand, within Ga0059261_1554at 1627.844 kb on + strand, within Ga0059261_1554at 1627.844 kb on + strand, within Ga0059261_1554at 1627.844 kb on + strand, within Ga0059261_1554at 1627.844 kb on + strandat 1627.845 kb on - strand, within Ga0059261_1554at 1627.845 kb on - strand, within Ga0059261_1554at 1627.883 kb on - strand, within Ga0059261_1554at 1627.903 kb on - strandat 1627.903 kb on - strand, within Ga0059261_1554at 1627.984 kb on + strand, within Ga0059261_1554at 1627.985 kb on - strand, within Ga0059261_1554at 1628.106 kb on + strandat 1628.106 kb on + strandat 1628.106 kb on + strandat 1628.107 kb on - strandat 1628.107 kb on - strandat 1628.182 kb on + strandat 1628.182 kb on + strandat 1628.182 kb on + strandat 1628.182 kb on + strandat 1628.183 kb on - strandat 1628.215 kb on + strandat 1628.314 kb on + strandat 1628.314 kb on + strandat 1628.315 kb on - strandat 1628.331 kb on + strandat 1628.331 kb on + strandat 1628.331 kb on + strandat 1628.332 kb on - strandat 1628.389 kb on + strandat 1628.389 kb on + strandat 1628.390 kb on - strandat 1628.443 kb on - strandat 1628.443 kb on - strandat 1628.575 kb on + strand, within Ga0059261_1555at 1628.575 kb on + strand, within Ga0059261_1555at 1628.575 kb on + strand, within Ga0059261_1555at 1628.575 kb on + strand, within Ga0059261_1555at 1628.576 kb on - strand, within Ga0059261_1555at 1628.576 kb on - strand, within Ga0059261_1555at 1628.576 kb on - strand, within Ga0059261_1555at 1628.576 kb on - strand, within Ga0059261_1555at 1628.576 kb on - strand, within Ga0059261_1555at 1628.576 kb on - strand, within Ga0059261_1555at 1628.767 kb on + strand, within Ga0059261_1555at 1628.767 kb on + strand, within Ga0059261_1555at 1628.768 kb on - strand, within Ga0059261_1555at 1628.879 kb on + strand, within Ga0059261_1555at 1628.880 kb on - strand, within Ga0059261_1555at 1628.923 kb on + strandat 1628.923 kb on + strandat 1628.923 kb on + strandat 1628.923 kb on + strandat 1628.923 kb on + strandat 1628.923 kb on + strandat 1628.923 kb on + strandat 1628.924 kb on - strandat 1628.924 kb on - strandat 1628.924 kb on - strandat 1628.924 kb on - strandat 1628.924 kb on - strandat 1628.924 kb on - strandat 1628.928 kb on - strandat 1629.254 kb on + strand, within Ga0059261_1556at 1629.255 kb on - strand, within Ga0059261_1556at 1629.255 kb on - strand, within Ga0059261_1556at 1629.255 kb on - strand, within Ga0059261_1556at 1629.472 kb on + strandat 1629.472 kb on + strand, within Ga0059261_1556at 1629.472 kb on + strand, within Ga0059261_1556at 1629.472 kb on + strand, within Ga0059261_1556at 1629.472 kb on + strand, within Ga0059261_1556at 1629.472 kb on + strand, within Ga0059261_1556at 1629.473 kb on - strand, within Ga0059261_1556at 1629.473 kb on - strand, within Ga0059261_1556at 1629.473 kb on - strand, within Ga0059261_1556at 1629.473 kb on - strand, within Ga0059261_1556at 1629.477 kb on + strand, within Ga0059261_1556at 1629.477 kb on + strand, within Ga0059261_1556at 1629.477 kb on + strand, within Ga0059261_1556at 1629.477 kb on + strand, within Ga0059261_1556at 1629.477 kb on + strand, within Ga0059261_1556at 1629.477 kb on + strand, within Ga0059261_1556at 1629.478 kb on - strand, within Ga0059261_1556at 1629.478 kb on - strand, within Ga0059261_1556

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
remove
1,627,501 + Ga0059261_1554 0.74 +0.3
1,627,501 + Ga0059261_1554 0.74 -0.5
1,627,501 + Ga0059261_1554 0.74 +1.0
1,627,501 + Ga0059261_1554 0.74 -0.2
1,627,501 + Ga0059261_1554 0.74 -0.6
1,627,501 + Ga0059261_1554 0.74 +0.0
1,627,502 - Ga0059261_1554 0.74 +0.3
1,627,502 - Ga0059261_1554 0.74 +0.6
1,627,502 - Ga0059261_1554 0.74 -0.0
1,627,603 + Ga0059261_1554 0.77 -0.1
1,627,603 + Ga0059261_1554 0.77 -0.6
1,627,603 + Ga0059261_1554 0.77 +0.2
1,627,603 + Ga0059261_1554 0.77 -0.3
1,627,603 + Ga0059261_1554 0.77 -0.4
1,627,603 + Ga0059261_1554 0.77 -0.0
1,627,604 - Ga0059261_1554 0.77 +0.3
1,627,604 - Ga0059261_1554 0.77 +0.1
1,627,604 - Ga0059261_1554 0.77 -0.5
1,627,604 - +0.3
1,627,618 + Ga0059261_1554 0.78 -0.2
1,627,618 + Ga0059261_1554 0.78 -0.2
1,627,690 + Ga0059261_1554 0.80 -1.3
1,627,690 + Ga0059261_1554 0.80 +0.0
1,627,690 + Ga0059261_1554 0.80 +0.0
1,627,690 + Ga0059261_1554 0.80 -2.0
1,627,690 + Ga0059261_1554 0.80 -0.1
1,627,690 + Ga0059261_1554 0.80 +0.3
1,627,690 + Ga0059261_1554 0.80 +0.1
1,627,690 + Ga0059261_1554 0.80 -0.8
1,627,690 + Ga0059261_1554 0.80 +0.9
1,627,691 - Ga0059261_1554 0.80 +0.1
1,627,691 - Ga0059261_1554 0.80 -0.3
1,627,691 - Ga0059261_1554 0.80 +0.1
1,627,691 - Ga0059261_1554 0.80 +0.9
1,627,691 - Ga0059261_1554 0.80 -0.6
1,627,691 - Ga0059261_1554 0.80 +1.3
1,627,691 - Ga0059261_1554 0.80 -0.3
1,627,691 - Ga0059261_1554 0.80 +0.4
1,627,691 - Ga0059261_1554 0.80 +0.6
1,627,691 - Ga0059261_1554 0.80 +0.5
1,627,691 - Ga0059261_1554 0.80 +0.0
1,627,691 - Ga0059261_1554 0.80 +1.4
1,627,691 - Ga0059261_1554 0.80 +0.3
1,627,691 - Ga0059261_1554 0.80 -0.8
1,627,691 - Ga0059261_1554 0.80 +0.1
1,627,691 - Ga0059261_1554 0.80 +0.7
1,627,691 - Ga0059261_1554 0.80 -0.9
1,627,753 + Ga0059261_1554 0.81 +0.6
1,627,754 - Ga0059261_1554 0.81 -0.6
1,627,822 + Ga0059261_1554 0.83 -0.7
1,627,822 + Ga0059261_1554 0.83 -0.1
1,627,822 + Ga0059261_1554 0.83 +0.1
1,627,823 - Ga0059261_1554 0.83 +0.9
1,627,823 - Ga0059261_1554 0.83 -0.3
1,627,844 + Ga0059261_1554 0.84 +0.5
1,627,844 + Ga0059261_1554 0.84 -1.4
1,627,844 + Ga0059261_1554 0.84 +1.3
1,627,844 + +0.7
1,627,845 - Ga0059261_1554 0.84 -0.2
1,627,845 - Ga0059261_1554 0.84 +0.5
1,627,883 - Ga0059261_1554 0.85 +0.1
1,627,903 - +1.9
1,627,903 - Ga0059261_1554 0.86 -0.5
1,627,984 + Ga0059261_1554 0.88 -0.5
1,627,985 - Ga0059261_1554 0.88 +0.5
1,628,106 + -0.5
1,628,106 + +0.5
1,628,106 + -1.2
1,628,107 - +1.0
1,628,107 - -0.6
1,628,182 + -0.3
1,628,182 + +0.3
1,628,182 + +0.3
1,628,182 + +0.5
1,628,183 - -0.4
1,628,215 + -0.4
1,628,314 + -0.1
1,628,314 + +0.4
1,628,315 - -0.8
1,628,331 + -0.7
1,628,331 + -0.0
1,628,331 + -1.6
1,628,332 - -0.1
1,628,389 + +0.1
1,628,389 + -0.3
1,628,390 - -0.4
1,628,443 - -0.3
1,628,443 - -0.4
1,628,575 + Ga0059261_1555 0.20 +0.7
1,628,575 + Ga0059261_1555 0.20 +0.8
1,628,575 + Ga0059261_1555 0.20 -0.1
1,628,575 + Ga0059261_1555 0.20 +0.2
1,628,576 - Ga0059261_1555 0.20 +0.2
1,628,576 - Ga0059261_1555 0.20 -0.9
1,628,576 - Ga0059261_1555 0.20 +0.2
1,628,576 - Ga0059261_1555 0.20 -0.1
1,628,576 - Ga0059261_1555 0.20 +0.4
1,628,576 - Ga0059261_1555 0.20 +0.5
1,628,767 + Ga0059261_1555 0.64 -0.4
1,628,767 + Ga0059261_1555 0.64 +0.4
1,628,768 - Ga0059261_1555 0.64 +0.4
1,628,879 + Ga0059261_1555 0.89 +1.0
1,628,880 - Ga0059261_1555 0.89 -0.4
1,628,923 + +0.3
1,628,923 + +0.9
1,628,923 + -0.5
1,628,923 + +0.8
1,628,923 + +0.3
1,628,923 + +0.2
1,628,923 + -0.6
1,628,924 - +0.5
1,628,924 - -0.9
1,628,924 - -0.2
1,628,924 - +0.3
1,628,924 - +0.4
1,628,924 - +0.6
1,628,928 - -0.5
1,629,254 + Ga0059261_1556 0.42 -0.4
1,629,255 - Ga0059261_1556 0.42 -0.4
1,629,255 - Ga0059261_1556 0.42 +0.9
1,629,255 - Ga0059261_1556 0.42 -0.2
1,629,472 + +1.7
1,629,472 + Ga0059261_1556 0.70 -0.3
1,629,472 + Ga0059261_1556 0.70 -0.2
1,629,472 + Ga0059261_1556 0.70 -0.8
1,629,472 + Ga0059261_1556 0.70 +0.4
1,629,472 + Ga0059261_1556 0.70 -0.6
1,629,473 - Ga0059261_1556 0.71 -0.5
1,629,473 - Ga0059261_1556 0.71 +0.0
1,629,473 - Ga0059261_1556 0.71 -1.9
1,629,473 - Ga0059261_1556 0.71 +0.0
1,629,477 + Ga0059261_1556 0.71 +0.2
1,629,477 + Ga0059261_1556 0.71 +0.4
1,629,477 + Ga0059261_1556 0.71 +0.9
1,629,477 + Ga0059261_1556 0.71 -0.3
1,629,477 + Ga0059261_1556 0.71 -0.3
1,629,477 + Ga0059261_1556 0.71 -0.0
1,629,478 - Ga0059261_1556 0.71 -0.0
1,629,478 - Ga0059261_1556 0.71 -0.9

Or see this region's nucleotide sequence