Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1410

Experiment: Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1408 and Ga0059261_1409 are separated by 33 nucleotidesGa0059261_1409 and Ga0059261_1410 overlap by 4 nucleotidesGa0059261_1410 and Ga0059261_1411 are separated by 177 nucleotidesGa0059261_1411 and Ga0059261_1412 are separated by 192 nucleotides Ga0059261_1408: Ga0059261_1408 - Domain of unknown function (DUF4168), at 1,484,440 to 1,484,808 _1408 Ga0059261_1409: Ga0059261_1409 - hypothetical protein, at 1,484,842 to 1,485,306 _1409 Ga0059261_1410: Ga0059261_1410 - Fructose-2,6-bisphosphatase, at 1,485,303 to 1,485,932 _1410 Ga0059261_1411: Ga0059261_1411 - Opacity protein and related surface antigens, at 1,486,110 to 1,486,706 _1411 Ga0059261_1412: Ga0059261_1412 - DNA polymerase III, beta subunit, at 1,486,899 to 1,488,002 _1412 Position (kb) 1485 1486Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1484.439 kb on + strandat 1484.440 kb on - strandat 1484.440 kb on - strandat 1484.440 kb on - strandat 1484.676 kb on - strand, within Ga0059261_1408at 1484.676 kb on - strand, within Ga0059261_1408at 1484.793 kb on + strandat 1484.793 kb on + strandat 1484.793 kb on + strandat 1484.793 kb on + strandat 1484.794 kb on - strandat 1484.794 kb on - strandat 1484.794 kb on - strandat 1484.807 kb on - strandat 1484.843 kb on + strandat 1484.844 kb on - strandat 1484.844 kb on - strandat 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.903 kb on + strand, within Ga0059261_1409at 1484.904 kb on - strand, within Ga0059261_1409at 1484.904 kb on - strand, within Ga0059261_1409at 1484.904 kb on - strand, within Ga0059261_1409at 1484.904 kb on - strand, within Ga0059261_1409at 1484.904 kb on - strand, within Ga0059261_1409at 1484.907 kb on + strand, within Ga0059261_1409at 1484.907 kb on + strand, within Ga0059261_1409at 1484.907 kb on + strand, within Ga0059261_1409at 1484.908 kb on - strand, within Ga0059261_1409at 1484.908 kb on - strand, within Ga0059261_1409at 1484.908 kb on - strand, within Ga0059261_1409at 1484.908 kb on - strand, within Ga0059261_1409at 1485.194 kb on + strand, within Ga0059261_1409at 1485.195 kb on - strand, within Ga0059261_1409at 1485.195 kb on - strand, within Ga0059261_1409at 1485.462 kb on - strand, within Ga0059261_1410at 1485.462 kb on - strand, within Ga0059261_1410at 1485.544 kb on + strand, within Ga0059261_1410at 1485.545 kb on - strand, within Ga0059261_1410at 1485.545 kb on - strand, within Ga0059261_1410at 1485.545 kb on - strand, within Ga0059261_1410at 1485.622 kb on + strand, within Ga0059261_1410at 1485.622 kb on + strand, within Ga0059261_1410at 1485.622 kb on + strand, within Ga0059261_1410at 1485.622 kb on + strand, within Ga0059261_1410at 1485.622 kb on + strand, within Ga0059261_1410at 1485.623 kb on - strand, within Ga0059261_1410at 1485.623 kb on - strand, within Ga0059261_1410at 1485.626 kb on - strand, within Ga0059261_1410at 1485.626 kb on - strand, within Ga0059261_1410at 1485.846 kb on - strand, within Ga0059261_1410at 1485.970 kb on - strandat 1485.985 kb on + strandat 1485.986 kb on - strandat 1485.986 kb on - strandat 1485.986 kb on - strandat 1486.091 kb on + strandat 1486.091 kb on + strandat 1486.091 kb on + strandat 1486.091 kb on + strandat 1486.091 kb on + strandat 1486.092 kb on - strandat 1486.092 kb on - strandat 1486.092 kb on - strandat 1486.092 kb on - strandat 1486.097 kb on + strandat 1486.098 kb on - strandat 1486.098 kb on - strandat 1486.105 kb on + strandat 1486.105 kb on + strandat 1486.105 kb on + strandat 1486.105 kb on + strandat 1486.106 kb on - strandat 1486.106 kb on - strandat 1486.106 kb on - strandat 1486.106 kb on - strandat 1486.106 kb on - strandat 1486.109 kb on + strandat 1486.110 kb on - strandat 1486.110 kb on - strandat 1486.115 kb on + strandat 1486.116 kb on - strandat 1486.215 kb on + strand, within Ga0059261_1411at 1486.216 kb on - strand, within Ga0059261_1411at 1486.216 kb on - strand, within Ga0059261_1411at 1486.216 kb on - strand, within Ga0059261_1411at 1486.216 kb on - strand, within Ga0059261_1411at 1486.272 kb on + strand, within Ga0059261_1411at 1486.272 kb on + strand, within Ga0059261_1411at 1486.272 kb on + strand, within Ga0059261_1411at 1486.272 kb on + strand, within Ga0059261_1411at 1486.272 kb on + strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.273 kb on - strand, within Ga0059261_1411at 1486.290 kb on + strand, within Ga0059261_1411at 1486.291 kb on - strand, within Ga0059261_1411at 1486.291 kb on - strand, within Ga0059261_1411at 1486.419 kb on + strand, within Ga0059261_1411at 1486.419 kb on + strand, within Ga0059261_1411at 1486.419 kb on + strand, within Ga0059261_1411at 1486.419 kb on + strand, within Ga0059261_1411at 1486.419 kb on + strand, within Ga0059261_1411at 1486.419 kb on + strand, within Ga0059261_1411at 1486.419 kb on + strand, within Ga0059261_1411at 1486.419 kb on + strand, within Ga0059261_1411at 1486.419 kb on + strand, within Ga0059261_1411at 1486.419 kb on + strand, within Ga0059261_1411at 1486.419 kb on + strand, within Ga0059261_1411at 1486.419 kb on + strand, within Ga0059261_1411at 1486.420 kb on - strand, within Ga0059261_1411at 1486.420 kb on - strand, within Ga0059261_1411at 1486.420 kb on - strand, within Ga0059261_1411at 1486.420 kb on - strand, within Ga0059261_1411at 1486.420 kb on - strand, within Ga0059261_1411at 1486.420 kb on - strand, within Ga0059261_1411at 1486.420 kb on - strand, within Ga0059261_1411at 1486.420 kb on - strand, within Ga0059261_1411at 1486.420 kb on - strand, within Ga0059261_1411at 1486.420 kb on - strand, within Ga0059261_1411at 1486.420 kb on - strand, within Ga0059261_1411at 1486.420 kb on - strand, within Ga0059261_1411at 1486.420 kb on - strand, within Ga0059261_1411at 1486.420 kb on - strand, within Ga0059261_1411at 1486.420 kb on - strand, within Ga0059261_1411at 1486.467 kb on + strand, within Ga0059261_1411at 1486.467 kb on + strand, within Ga0059261_1411at 1486.467 kb on + strand, within Ga0059261_1411at 1486.467 kb on + strand, within Ga0059261_1411at 1486.467 kb on + strand, within Ga0059261_1411at 1486.467 kb on + strand, within Ga0059261_1411at 1486.467 kb on + strand, within Ga0059261_1411at 1486.467 kb on + strand, within Ga0059261_1411at 1486.467 kb on + strand, within Ga0059261_1411at 1486.467 kb on + strand, within Ga0059261_1411at 1486.467 kb on + strand, within Ga0059261_1411at 1486.467 kb on + strand, within Ga0059261_1411at 1486.468 kb on - strand, within Ga0059261_1411at 1486.468 kb on - strand, within Ga0059261_1411at 1486.468 kb on - strand, within Ga0059261_1411at 1486.468 kb on - strand, within Ga0059261_1411at 1486.468 kb on - strand, within Ga0059261_1411at 1486.468 kb on - strand, within Ga0059261_1411at 1486.468 kb on - strand, within Ga0059261_1411at 1486.483 kb on - strand, within Ga0059261_1411at 1486.509 kb on + strand, within Ga0059261_1411at 1486.509 kb on + strand, within Ga0059261_1411at 1486.509 kb on + strand, within Ga0059261_1411at 1486.509 kb on + strand, within Ga0059261_1411at 1486.509 kb on + strand, within Ga0059261_1411at 1486.510 kb on - strand, within Ga0059261_1411at 1486.510 kb on - strand, within Ga0059261_1411at 1486.547 kb on + strand, within Ga0059261_1411at 1486.547 kb on + strand, within Ga0059261_1411at 1486.562 kb on + strand, within Ga0059261_1411at 1486.602 kb on + strand, within Ga0059261_1411at 1486.602 kb on + strand, within Ga0059261_1411at 1486.602 kb on + strand, within Ga0059261_1411at 1486.602 kb on + strand, within Ga0059261_1411at 1486.602 kb on + strand, within Ga0059261_1411at 1486.602 kb on + strand, within Ga0059261_1411at 1486.602 kb on + strand, within Ga0059261_1411at 1486.602 kb on + strandat 1486.602 kb on + strand, within Ga0059261_1411at 1486.602 kb on + strand, within Ga0059261_1411at 1486.602 kb on + strand, within Ga0059261_1411at 1486.602 kb on + strand, within Ga0059261_1411at 1486.603 kb on - strand, within Ga0059261_1411at 1486.603 kb on - strand, within Ga0059261_1411at 1486.603 kb on - strand, within Ga0059261_1411at 1486.603 kb on - strand, within Ga0059261_1411at 1486.603 kb on - strand, within Ga0059261_1411at 1486.603 kb on - strandat 1486.603 kb on - strand, within Ga0059261_1411at 1486.603 kb on - strand, within Ga0059261_1411at 1486.617 kb on + strand, within Ga0059261_1411at 1486.618 kb on - strand, within Ga0059261_1411at 1486.623 kb on + strand, within Ga0059261_1411at 1486.632 kb on + strand, within Ga0059261_1411at 1486.633 kb on - strand, within Ga0059261_1411at 1486.633 kb on - strand, within Ga0059261_1411at 1486.633 kb on - strand, within Ga0059261_1411at 1486.650 kb on + strandat 1486.650 kb on + strandat 1486.651 kb on - strandat 1486.651 kb on - strandat 1486.651 kb on - strandat 1486.651 kb on - strandat 1486.704 kb on + strandat 1486.704 kb on + strandat 1486.704 kb on + strandat 1486.705 kb on - strandat 1486.705 kb on - strandat 1486.770 kb on + strandat 1486.770 kb on + strandat 1486.810 kb on + strandat 1486.816 kb on + strandat 1486.816 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
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1,484,439 + -0.5
1,484,440 - -0.8
1,484,440 - +0.3
1,484,440 - -0.5
1,484,676 - Ga0059261_1408 0.64 -0.1
1,484,676 - Ga0059261_1408 0.64 +0.4
1,484,793 + -0.2
1,484,793 + -0.2
1,484,793 + -0.6
1,484,793 + -0.5
1,484,794 - -0.2
1,484,794 - -0.7
1,484,794 - -2.3
1,484,807 - +1.1
1,484,843 + +0.4
1,484,844 - +0.7
1,484,844 - -0.6
1,484,903 + Ga0059261_1409 0.13 -0.1
1,484,903 + Ga0059261_1409 0.13 -0.1
1,484,903 + Ga0059261_1409 0.13 +0.0
1,484,903 + Ga0059261_1409 0.13 -0.3
1,484,903 + Ga0059261_1409 0.13 +0.4
1,484,903 + Ga0059261_1409 0.13 -0.3
1,484,903 + Ga0059261_1409 0.13 +0.6
1,484,903 + Ga0059261_1409 0.13 -0.3
1,484,903 + Ga0059261_1409 0.13 -0.0
1,484,903 + Ga0059261_1409 0.13 +0.4
1,484,904 - Ga0059261_1409 0.13 -0.4
1,484,904 - Ga0059261_1409 0.13 +0.3
1,484,904 - Ga0059261_1409 0.13 -2.3
1,484,904 - Ga0059261_1409 0.13 +0.5
1,484,904 - Ga0059261_1409 0.13 -0.7
1,484,907 + Ga0059261_1409 0.14 +0.1
1,484,907 + Ga0059261_1409 0.14 +0.1
1,484,907 + Ga0059261_1409 0.14 +0.3
1,484,908 - Ga0059261_1409 0.14 +0.5
1,484,908 - Ga0059261_1409 0.14 -0.3
1,484,908 - Ga0059261_1409 0.14 -0.6
1,484,908 - Ga0059261_1409 0.14 -1.2
1,485,194 + Ga0059261_1409 0.76 +0.2
1,485,195 - Ga0059261_1409 0.76 +0.4
1,485,195 - Ga0059261_1409 0.76 +1.0
1,485,462 - Ga0059261_1410 0.25 +0.4
1,485,462 - Ga0059261_1410 0.25 -0.2
1,485,544 + Ga0059261_1410 0.38 +0.3
1,485,545 - Ga0059261_1410 0.38 -1.0
1,485,545 - Ga0059261_1410 0.38 +0.9
1,485,545 - Ga0059261_1410 0.38 +1.2
1,485,622 + Ga0059261_1410 0.51 -1.6
1,485,622 + Ga0059261_1410 0.51 +0.1
1,485,622 + Ga0059261_1410 0.51 -0.3
1,485,622 + Ga0059261_1410 0.51 +0.3
1,485,622 + Ga0059261_1410 0.51 -0.0
1,485,623 - Ga0059261_1410 0.51 +2.6
1,485,623 - Ga0059261_1410 0.51 +0.3
1,485,626 - Ga0059261_1410 0.51 +0.5
1,485,626 - Ga0059261_1410 0.51 -0.1
1,485,846 - Ga0059261_1410 0.86 +0.1
1,485,970 - +1.0
1,485,985 + -0.5
1,485,986 - +1.3
1,485,986 - -0.3
1,485,986 - -1.1
1,486,091 + -0.5
1,486,091 + -0.0
1,486,091 + +1.3
1,486,091 + -0.3
1,486,091 + -0.4
1,486,092 - +0.3
1,486,092 - +0.5
1,486,092 - -0.7
1,486,092 - -0.4
1,486,097 + -0.7
1,486,098 - -0.4
1,486,098 - -1.1
1,486,105 + +0.4
1,486,105 + -0.2
1,486,105 + -1.5
1,486,105 + -0.4
1,486,106 - -0.2
1,486,106 - +0.7
1,486,106 - +0.1
1,486,106 - -0.6
1,486,106 - -0.1
1,486,109 + -0.1
1,486,110 - +0.4
1,486,110 - -0.9
1,486,115 + +0.5
1,486,116 - -1.3
1,486,215 + Ga0059261_1411 0.18 -1.7
1,486,216 - Ga0059261_1411 0.18 -0.7
1,486,216 - Ga0059261_1411 0.18 -0.0
1,486,216 - Ga0059261_1411 0.18 -0.4
1,486,216 - Ga0059261_1411 0.18 +0.0
1,486,272 + Ga0059261_1411 0.27 +0.4
1,486,272 + Ga0059261_1411 0.27 -0.9
1,486,272 + Ga0059261_1411 0.27 -1.2
1,486,272 + Ga0059261_1411 0.27 -0.0
1,486,272 + Ga0059261_1411 0.27 -0.1
1,486,273 - Ga0059261_1411 0.27 +0.8
1,486,273 - Ga0059261_1411 0.27 -1.5
1,486,273 - Ga0059261_1411 0.27 +0.1
1,486,273 - Ga0059261_1411 0.27 -2.1
1,486,273 - Ga0059261_1411 0.27 -0.3
1,486,273 - Ga0059261_1411 0.27 -1.6
1,486,273 - Ga0059261_1411 0.27 -0.3
1,486,273 - Ga0059261_1411 0.27 -1.2
1,486,273 - Ga0059261_1411 0.27 -1.1
1,486,273 - Ga0059261_1411 0.27 -1.0
1,486,273 - Ga0059261_1411 0.27 -1.1
1,486,273 - Ga0059261_1411 0.27 -2.3
1,486,290 + Ga0059261_1411 0.30 +0.1
1,486,291 - Ga0059261_1411 0.30 -0.3
1,486,291 - Ga0059261_1411 0.30 -1.6
1,486,419 + Ga0059261_1411 0.52 -0.7
1,486,419 + Ga0059261_1411 0.52 -1.1
1,486,419 + Ga0059261_1411 0.52 +0.4
1,486,419 + Ga0059261_1411 0.52 -0.7
1,486,419 + Ga0059261_1411 0.52 -0.7
1,486,419 + Ga0059261_1411 0.52 -0.5
1,486,419 + Ga0059261_1411 0.52 +1.0
1,486,419 + Ga0059261_1411 0.52 -0.1
1,486,419 + Ga0059261_1411 0.52 +0.2
1,486,419 + Ga0059261_1411 0.52 +0.5
1,486,419 + Ga0059261_1411 0.52 -0.6
1,486,419 + Ga0059261_1411 0.52 -0.3
1,486,420 - Ga0059261_1411 0.52 -1.8
1,486,420 - Ga0059261_1411 0.52 -0.5
1,486,420 - Ga0059261_1411 0.52 -0.9
1,486,420 - Ga0059261_1411 0.52 +0.7
1,486,420 - Ga0059261_1411 0.52 -0.5
1,486,420 - Ga0059261_1411 0.52 +0.4
1,486,420 - Ga0059261_1411 0.52 +0.4
1,486,420 - Ga0059261_1411 0.52 -1.9
1,486,420 - Ga0059261_1411 0.52 +0.3
1,486,420 - Ga0059261_1411 0.52 -3.4
1,486,420 - Ga0059261_1411 0.52 -0.7
1,486,420 - Ga0059261_1411 0.52 +0.0
1,486,420 - Ga0059261_1411 0.52 +0.3
1,486,420 - Ga0059261_1411 0.52 -0.3
1,486,420 - Ga0059261_1411 0.52 -0.2
1,486,467 + Ga0059261_1411 0.60 -1.1
1,486,467 + Ga0059261_1411 0.60 +0.1
1,486,467 + Ga0059261_1411 0.60 -1.1
1,486,467 + Ga0059261_1411 0.60 +0.6
1,486,467 + Ga0059261_1411 0.60 -0.7
1,486,467 + Ga0059261_1411 0.60 -0.6
1,486,467 + Ga0059261_1411 0.60 -0.0
1,486,467 + Ga0059261_1411 0.60 +0.3
1,486,467 + Ga0059261_1411 0.60 -0.7
1,486,467 + Ga0059261_1411 0.60 -0.7
1,486,467 + Ga0059261_1411 0.60 -1.2
1,486,467 + Ga0059261_1411 0.60 +0.2
1,486,468 - Ga0059261_1411 0.60 -1.1
1,486,468 - Ga0059261_1411 0.60 +0.8
1,486,468 - Ga0059261_1411 0.60 -0.2
1,486,468 - Ga0059261_1411 0.60 -0.3
1,486,468 - Ga0059261_1411 0.60 +0.0
1,486,468 - Ga0059261_1411 0.60 -0.7
1,486,468 - Ga0059261_1411 0.60 -0.2
1,486,483 - Ga0059261_1411 0.62 -0.5
1,486,509 + Ga0059261_1411 0.67 +0.3
1,486,509 + Ga0059261_1411 0.67 -0.7
1,486,509 + Ga0059261_1411 0.67 -2.2
1,486,509 + Ga0059261_1411 0.67 -0.9
1,486,509 + Ga0059261_1411 0.67 -1.2
1,486,510 - Ga0059261_1411 0.67 +0.1
1,486,510 - Ga0059261_1411 0.67 -0.9
1,486,547 + Ga0059261_1411 0.73 -0.8
1,486,547 + Ga0059261_1411 0.73 -1.2
1,486,562 + Ga0059261_1411 0.76 -1.0
1,486,602 + Ga0059261_1411 0.82 -0.4
1,486,602 + Ga0059261_1411 0.82 +0.8
1,486,602 + Ga0059261_1411 0.82 -0.5
1,486,602 + Ga0059261_1411 0.82 -0.2
1,486,602 + Ga0059261_1411 0.82 -0.1
1,486,602 + Ga0059261_1411 0.82 -0.1
1,486,602 + Ga0059261_1411 0.82 +0.3
1,486,602 + +0.9
1,486,602 + Ga0059261_1411 0.82 -0.6
1,486,602 + Ga0059261_1411 0.82 -0.2
1,486,602 + Ga0059261_1411 0.82 -1.5
1,486,602 + Ga0059261_1411 0.82 -1.9
1,486,603 - Ga0059261_1411 0.83 +0.7
1,486,603 - Ga0059261_1411 0.83 -0.4
1,486,603 - Ga0059261_1411 0.83 -1.1
1,486,603 - Ga0059261_1411 0.83 -1.4
1,486,603 - Ga0059261_1411 0.83 -0.3
1,486,603 - +0.3
1,486,603 - Ga0059261_1411 0.83 -1.2
1,486,603 - Ga0059261_1411 0.83 +0.3
1,486,617 + Ga0059261_1411 0.85 +0.4
1,486,618 - Ga0059261_1411 0.85 -1.3
1,486,623 + Ga0059261_1411 0.86 -0.7
1,486,632 + Ga0059261_1411 0.87 -0.5
1,486,633 - Ga0059261_1411 0.88 +0.3
1,486,633 - Ga0059261_1411 0.88 -1.1
1,486,633 - Ga0059261_1411 0.88 +0.5
1,486,650 + -1.0
1,486,650 + -0.5
1,486,651 - +0.0
1,486,651 - +1.0
1,486,651 - -0.5
1,486,651 - -0.5
1,486,704 + -0.3
1,486,704 + -0.3
1,486,704 + +0.3
1,486,705 - -0.2
1,486,705 - -0.7
1,486,770 + +0.5
1,486,770 + -0.1
1,486,810 + -0.3
1,486,816 + -0.7
1,486,816 + -0.5

Or see this region's nucleotide sequence