Experiment: Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0611 and Ga0059261_0612 are separated by 100 nucleotides Ga0059261_0612 and Ga0059261_0613 are separated by 27 nucleotides Ga0059261_0613 and Ga0059261_0614 are separated by 25 nucleotides
Ga0059261_0611: Ga0059261_0611 - Peptidase family M23, at 646,237 to 646,695
_0611
Ga0059261_0612: Ga0059261_0612 - RNA polymerase sigma factor, sigma-70 family, at 646,796 to 647,311
_0612
Ga0059261_0613: Ga0059261_0613 - FecR family protein, at 647,339 to 648,304
_0613
Ga0059261_0614: Ga0059261_0614 - Outer membrane receptor proteins, mostly Fe transport, at 648,330 to 650,780
_0614
Position (kb) 647
648
649 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 646.688 kb on + strand at 646.688 kb on + strand at 646.688 kb on + strand at 646.688 kb on + strand at 646.688 kb on - strand at 646.689 kb on - strand at 646.689 kb on - strand at 646.689 kb on - strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.700 kb on - strand at 646.700 kb on - strand at 646.700 kb on - strand at 646.724 kb on + strand at 646.724 kb on + strand at 646.724 kb on + strand at 646.725 kb on - strand at 646.970 kb on + strand, within Ga0059261_0612 at 646.970 kb on + strand, within Ga0059261_0612 at 646.970 kb on + strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 647.338 kb on + strand at 648.044 kb on - strand, within Ga0059261_0613 at 648.080 kb on + strand, within Ga0059261_0613 at 648.080 kb on + strand, within Ga0059261_0613 at 648.081 kb on - strand, within Ga0059261_0613 at 648.083 kb on + strand at 648.083 kb on + strand, within Ga0059261_0613 at 648.083 kb on + strand, within Ga0059261_0613 at 648.083 kb on + strand, within Ga0059261_0613 at 648.083 kb on + strand at 648.083 kb on + strand, within Ga0059261_0613 at 648.173 kb on + strand, within Ga0059261_0613 at 648.173 kb on + strand, within Ga0059261_0613 at 648.174 kb on - strand, within Ga0059261_0613 at 648.174 kb on - strand, within Ga0059261_0613 at 648.174 kb on - strand, within Ga0059261_0613 at 648.175 kb on + strand at 648.176 kb on - strand, within Ga0059261_0613 at 648.274 kb on - strand at 648.472 kb on + strand at 648.473 kb on - strand at 648.473 kb on - strand at 648.567 kb on + strand at 648.567 kb on + strand at 648.567 kb on + strand at 648.568 kb on - strand at 648.903 kb on + strand, within Ga0059261_0614 at 648.903 kb on + strand, within Ga0059261_0614 at 648.903 kb on + strand, within Ga0059261_0614 at 648.904 kb on - strand, within Ga0059261_0614 at 648.927 kb on + strand, within Ga0059261_0614 at 648.927 kb on + strand, within Ga0059261_0614 at 648.928 kb on - strand, within Ga0059261_0614 at 648.928 kb on - strand, within Ga0059261_0614 at 648.957 kb on + strand, within Ga0059261_0614 at 648.958 kb on - strand, within Ga0059261_0614 at 649.209 kb on + strand, within Ga0059261_0614 at 649.210 kb on - strand, within Ga0059261_0614 at 649.211 kb on + strand, within Ga0059261_0614 at 649.212 kb on - strand, within Ga0059261_0614 at 649.212 kb on - strand, within Ga0059261_0614 at 649.212 kb on - strand, within Ga0059261_0614 at 649.212 kb on - strand, within Ga0059261_0614
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1.25 mM remove 646,688 + -0.1 646,688 + -0.1 646,688 + -0.9 646,688 + +0.9 646,688 - -0.6 646,689 - -0.2 646,689 - -0.2 646,689 - +0.4 646,699 + -0.2 646,699 + -0.1 646,699 + +0.5 646,699 + -0.0 646,699 + -0.3 646,699 + -0.2 646,700 - -0.1 646,700 - +0.8 646,700 - -0.2 646,724 + +1.1 646,724 + +1.4 646,724 + -0.2 646,725 - -0.5 646,970 + Ga0059261_0612 0.34 -0.9 646,970 + Ga0059261_0612 0.34 +0.1 646,970 + Ga0059261_0612 0.34 +0.5 646,971 - Ga0059261_0612 0.34 -0.5 646,971 - Ga0059261_0612 0.34 +0.3 646,971 - Ga0059261_0612 0.34 -1.1 646,971 - Ga0059261_0612 0.34 -1.1 646,971 - Ga0059261_0612 0.34 -0.7 647,338 + -2.7 648,044 - Ga0059261_0613 0.73 -1.0 648,080 + Ga0059261_0613 0.77 -2.3 648,080 + Ga0059261_0613 0.77 -0.5 648,081 - Ga0059261_0613 0.77 -0.5 648,083 + +0.1 648,083 + Ga0059261_0613 0.77 -1.7 648,083 + Ga0059261_0613 0.77 +1.1 648,083 + Ga0059261_0613 0.77 -1.9 648,083 + -1.5 648,083 + Ga0059261_0613 0.77 +0.1 648,173 + Ga0059261_0613 0.86 -1.2 648,173 + Ga0059261_0613 0.86 -1.7 648,174 - Ga0059261_0613 0.86 -3.0 648,174 - Ga0059261_0613 0.86 -2.1 648,174 - Ga0059261_0613 0.86 -1.5 648,175 + -0.9 648,176 - Ga0059261_0613 0.87 -0.0 648,274 - -0.9 648,472 + +0.4 648,473 - +0.0 648,473 - +0.2 648,567 + +0.0 648,567 + -0.1 648,567 + +0.0 648,568 - -0.1 648,903 + Ga0059261_0614 0.23 -0.3 648,903 + Ga0059261_0614 0.23 -0.3 648,903 + Ga0059261_0614 0.23 +0.9 648,904 - Ga0059261_0614 0.23 +0.0 648,927 + Ga0059261_0614 0.24 +0.6 648,927 + Ga0059261_0614 0.24 +0.5 648,928 - Ga0059261_0614 0.24 +0.7 648,928 - Ga0059261_0614 0.24 -0.2 648,957 + Ga0059261_0614 0.26 -1.0 648,958 - Ga0059261_0614 0.26 +0.4 649,209 + Ga0059261_0614 0.36 +0.4 649,210 - Ga0059261_0614 0.36 +0.2 649,211 + Ga0059261_0614 0.36 +1.1 649,212 - Ga0059261_0614 0.36 -0.0 649,212 - Ga0059261_0614 0.36 -0.8 649,212 - Ga0059261_0614 0.36 +0.1 649,212 - Ga0059261_0614 0.36 -0.0
Or see this region's nucleotide sequence