Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0387

Experiment: Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0386 and Ga0059261_0387 are separated by 7 nucleotidesGa0059261_0387 and Ga0059261_0388 overlap by 4 nucleotidesGa0059261_0388 and Ga0059261_0389 are separated by 2 nucleotides Ga0059261_0386: Ga0059261_0386 - Type IV secretory pathway, VirB4 components, at 370,945 to 373,404 _0386 Ga0059261_0387: Ga0059261_0387 - Type IV secretory pathway, TrbD component, at 373,412 to 373,696 _0387 Ga0059261_0388: Ga0059261_0388 - Type IV secretory pathway, VirB2 components (pilins), at 373,693 to 374,028 _0388 Ga0059261_0389: Ga0059261_0389 - P-type conjugative transfer ATPase TrbB, at 374,031 to 375,041 _0389 Position (kb) 373 374Strain fitness (log2 ratio) -2 -1 0 1 2at 372.512 kb on + strand, within Ga0059261_0386at 372.512 kb on + strand, within Ga0059261_0386at 372.512 kb on + strandat 372.512 kb on + strand, within Ga0059261_0386at 372.512 kb on + strand, within Ga0059261_0386at 372.512 kb on + strand, within Ga0059261_0386at 372.512 kb on + strand, within Ga0059261_0386at 372.512 kb on + strand, within Ga0059261_0386at 372.512 kb on + strand, within Ga0059261_0386at 372.512 kb on + strand, within Ga0059261_0386at 372.512 kb on + strand, within Ga0059261_0386at 372.512 kb on + strand, within Ga0059261_0386at 372.512 kb on + strand, within Ga0059261_0386at 372.512 kb on + strand, within Ga0059261_0386at 372.513 kb on - strand, within Ga0059261_0386at 372.513 kb on - strand, within Ga0059261_0386at 372.513 kb on - strand, within Ga0059261_0386at 372.513 kb on - strand, within Ga0059261_0386at 372.513 kb on - strand, within Ga0059261_0386at 372.513 kb on - strand, within Ga0059261_0386at 372.513 kb on - strand, within Ga0059261_0386at 372.513 kb on - strand, within Ga0059261_0386at 372.571 kb on + strand, within Ga0059261_0386at 372.571 kb on + strand, within Ga0059261_0386at 372.571 kb on + strand, within Ga0059261_0386at 372.572 kb on - strand, within Ga0059261_0386at 372.572 kb on - strand, within Ga0059261_0386at 372.572 kb on - strand, within Ga0059261_0386at 372.572 kb on - strand, within Ga0059261_0386at 372.572 kb on - strand, within Ga0059261_0386at 372.715 kb on + strand, within Ga0059261_0386at 372.715 kb on + strand, within Ga0059261_0386at 372.715 kb on + strand, within Ga0059261_0386at 372.715 kb on + strand, within Ga0059261_0386at 372.715 kb on + strand, within Ga0059261_0386at 372.716 kb on - strand, within Ga0059261_0386at 372.716 kb on - strand, within Ga0059261_0386at 372.716 kb on - strand, within Ga0059261_0386at 372.716 kb on - strand, within Ga0059261_0386at 372.716 kb on - strand, within Ga0059261_0386at 372.716 kb on - strand, within Ga0059261_0386at 372.785 kb on + strand, within Ga0059261_0386at 372.786 kb on - strand, within Ga0059261_0386at 372.786 kb on - strand, within Ga0059261_0386at 372.786 kb on - strand, within Ga0059261_0386at 372.786 kb on - strand, within Ga0059261_0386at 373.046 kb on + strand, within Ga0059261_0386at 373.046 kb on + strand, within Ga0059261_0386at 373.046 kb on + strand, within Ga0059261_0386at 373.046 kb on + strand, within Ga0059261_0386at 373.046 kb on + strand, within Ga0059261_0386at 373.046 kb on + strand, within Ga0059261_0386at 373.046 kb on + strand, within Ga0059261_0386at 373.046 kb on + strand, within Ga0059261_0386at 373.047 kb on - strand, within Ga0059261_0386at 373.047 kb on - strand, within Ga0059261_0386at 373.047 kb on - strandat 373.047 kb on - strand, within Ga0059261_0386at 373.049 kb on + strand, within Ga0059261_0386at 373.050 kb on - strand, within Ga0059261_0386at 373.145 kb on + strand, within Ga0059261_0386at 373.501 kb on + strand, within Ga0059261_0387at 373.502 kb on - strandat 373.557 kb on - strand, within Ga0059261_0387at 373.663 kb on + strand, within Ga0059261_0387at 373.664 kb on - strandat 373.664 kb on - strand, within Ga0059261_0387at 373.664 kb on - strand, within Ga0059261_0387at 373.664 kb on - strand, within Ga0059261_0387at 373.845 kb on + strand, within Ga0059261_0388at 373.845 kb on + strand, within Ga0059261_0388at 373.845 kb on + strand, within Ga0059261_0388at 373.845 kb on + strand, within Ga0059261_0388at 373.845 kb on + strand, within Ga0059261_0388at 373.845 kb on + strand, within Ga0059261_0388at 373.845 kb on + strand, within Ga0059261_0388at 373.845 kb on + strand, within Ga0059261_0388at 373.845 kb on + strand, within Ga0059261_0388at 373.845 kb on + strand, within Ga0059261_0388at 373.846 kb on - strand, within Ga0059261_0388at 373.846 kb on - strand, within Ga0059261_0388at 373.846 kb on - strand, within Ga0059261_0388at 373.846 kb on - strand, within Ga0059261_0388at 373.846 kb on - strand, within Ga0059261_0388at 373.846 kb on - strand, within Ga0059261_0388at 373.846 kb on - strand, within Ga0059261_0388at 373.846 kb on - strand, within Ga0059261_0388at 373.846 kb on - strand, within Ga0059261_0388at 373.846 kb on - strand, within Ga0059261_0388at 374.243 kb on - strand, within Ga0059261_0389at 374.659 kb on + strand, within Ga0059261_0389at 374.659 kb on + strand, within Ga0059261_0389at 374.659 kb on + strand, within Ga0059261_0389at 374.660 kb on - strand, within Ga0059261_0389at 374.660 kb on - strand, within Ga0059261_0389at 374.660 kb on - strand, within Ga0059261_0389at 374.674 kb on + strand, within Ga0059261_0389at 374.674 kb on + strand, within Ga0059261_0389at 374.675 kb on - strand, within Ga0059261_0389at 374.675 kb on - strand, within Ga0059261_0389at 374.675 kb on - strand, within Ga0059261_0389at 374.675 kb on - strand, within Ga0059261_0389

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
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372,512 + Ga0059261_0386 0.64 -0.0
372,512 + Ga0059261_0386 0.64 -1.0
372,512 + -0.5
372,512 + Ga0059261_0386 0.64 +0.6
372,512 + Ga0059261_0386 0.64 +0.0
372,512 + Ga0059261_0386 0.64 -0.4
372,512 + Ga0059261_0386 0.64 +0.0
372,512 + Ga0059261_0386 0.64 +0.6
372,512 + Ga0059261_0386 0.64 +1.0
372,512 + Ga0059261_0386 0.64 -0.2
372,512 + Ga0059261_0386 0.64 -0.5
372,512 + Ga0059261_0386 0.64 +0.8
372,512 + Ga0059261_0386 0.64 +0.2
372,512 + Ga0059261_0386 0.64 -1.0
372,513 - Ga0059261_0386 0.64 +0.0
372,513 - Ga0059261_0386 0.64 -0.9
372,513 - Ga0059261_0386 0.64 -1.6
372,513 - Ga0059261_0386 0.64 +0.1
372,513 - Ga0059261_0386 0.64 +0.1
372,513 - Ga0059261_0386 0.64 +1.1
372,513 - Ga0059261_0386 0.64 +0.4
372,513 - Ga0059261_0386 0.64 +0.6
372,571 + Ga0059261_0386 0.66 -0.4
372,571 + Ga0059261_0386 0.66 +0.2
372,571 + Ga0059261_0386 0.66 -1.5
372,572 - Ga0059261_0386 0.66 +0.6
372,572 - Ga0059261_0386 0.66 -0.1
372,572 - Ga0059261_0386 0.66 +0.5
372,572 - Ga0059261_0386 0.66 +1.2
372,572 - Ga0059261_0386 0.66 -0.6
372,715 + Ga0059261_0386 0.72 -0.8
372,715 + Ga0059261_0386 0.72 -0.4
372,715 + Ga0059261_0386 0.72 -1.4
372,715 + Ga0059261_0386 0.72 -0.9
372,715 + Ga0059261_0386 0.72 -1.1
372,716 - Ga0059261_0386 0.72 -0.2
372,716 - Ga0059261_0386 0.72 -1.3
372,716 - Ga0059261_0386 0.72 -1.7
372,716 - Ga0059261_0386 0.72 -1.3
372,716 - Ga0059261_0386 0.72 +0.5
372,716 - Ga0059261_0386 0.72 -0.5
372,785 + Ga0059261_0386 0.75 -0.5
372,786 - Ga0059261_0386 0.75 +1.1
372,786 - Ga0059261_0386 0.75 +0.5
372,786 - Ga0059261_0386 0.75 +0.7
372,786 - Ga0059261_0386 0.75 -0.1
373,046 + Ga0059261_0386 0.85 -0.3
373,046 + Ga0059261_0386 0.85 +0.3
373,046 + Ga0059261_0386 0.85 -0.7
373,046 + Ga0059261_0386 0.85 +0.5
373,046 + Ga0059261_0386 0.85 +0.1
373,046 + Ga0059261_0386 0.85 +0.1
373,046 + Ga0059261_0386 0.85 -0.5
373,046 + Ga0059261_0386 0.85 -0.5
373,047 - Ga0059261_0386 0.85 +0.9
373,047 - Ga0059261_0386 0.85 -0.1
373,047 - +0.1
373,047 - Ga0059261_0386 0.85 +0.4
373,049 + Ga0059261_0386 0.86 -0.1
373,050 - Ga0059261_0386 0.86 -1.9
373,145 + Ga0059261_0386 0.89 +1.3
373,501 + Ga0059261_0387 0.31 +0.3
373,502 - -1.2
373,557 - Ga0059261_0387 0.51 +0.2
373,663 + Ga0059261_0387 0.88 -1.1
373,664 - -0.9
373,664 - Ga0059261_0387 0.88 -0.7
373,664 - Ga0059261_0387 0.88 -1.2
373,664 - Ga0059261_0387 0.88 -0.8
373,845 + Ga0059261_0388 0.45 -0.8
373,845 + Ga0059261_0388 0.45 +0.6
373,845 + Ga0059261_0388 0.45 +0.0
373,845 + Ga0059261_0388 0.45 +0.2
373,845 + Ga0059261_0388 0.45 +0.5
373,845 + Ga0059261_0388 0.45 -0.2
373,845 + Ga0059261_0388 0.45 +0.4
373,845 + Ga0059261_0388 0.45 +0.6
373,845 + Ga0059261_0388 0.45 -0.1
373,845 + Ga0059261_0388 0.45 +0.3
373,846 - Ga0059261_0388 0.46 -1.0
373,846 - Ga0059261_0388 0.46 -0.9
373,846 - Ga0059261_0388 0.46 -1.3
373,846 - Ga0059261_0388 0.46 -1.3
373,846 - Ga0059261_0388 0.46 -0.2
373,846 - Ga0059261_0388 0.46 +2.1
373,846 - Ga0059261_0388 0.46 -0.2
373,846 - Ga0059261_0388 0.46 -0.2
373,846 - Ga0059261_0388 0.46 +0.0
373,846 - Ga0059261_0388 0.46 -0.5
374,243 - Ga0059261_0389 0.21 -0.7
374,659 + Ga0059261_0389 0.62 -0.3
374,659 + Ga0059261_0389 0.62 +0.5
374,659 + Ga0059261_0389 0.62 +0.0
374,660 - Ga0059261_0389 0.62 -1.8
374,660 - Ga0059261_0389 0.62 +0.2
374,660 - Ga0059261_0389 0.62 -0.5
374,674 + Ga0059261_0389 0.64 -0.4
374,674 + Ga0059261_0389 0.64 -0.3
374,675 - Ga0059261_0389 0.64 -0.1
374,675 - Ga0059261_0389 0.64 +1.8
374,675 - Ga0059261_0389 0.64 +0.0
374,675 - Ga0059261_0389 0.64 -0.1

Or see this region's nucleotide sequence