Experiment: Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0172 and Ga0059261_0173 overlap by 4 nucleotides Ga0059261_0173 and Ga0059261_0174 overlap by 4 nucleotides Ga0059261_0174 and Ga0059261_0175 overlap by 4 nucleotides Ga0059261_0175 and Ga0059261_0176 are separated by 76 nucleotides
Ga0059261_0172: Ga0059261_0172 - Cytochrome c biogenesis factor, at 157,795 to 159,729
_0172
Ga0059261_0173: Ga0059261_0173 - Cytochrome c-type biogenesis protein CcmE, at 159,726 to 160,160
_0173
Ga0059261_0174: Ga0059261_0174 - hypothetical protein, at 160,157 to 160,288
_0174
Ga0059261_0175: Ga0059261_0175 - heme exporter protein CcmC, at 160,285 to 161,001
_0175
Ga0059261_0176: Ga0059261_0176 - PilZ domain, at 161,078 to 161,335
_0176
Position (kb) 160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 159.192 kb on - strand, within Ga0059261_0172 at 159.192 kb on - strand, within Ga0059261_0172 at 159.200 kb on + strand, within Ga0059261_0172 at 159.321 kb on - strand, within Ga0059261_0172 at 159.321 kb on - strand, within Ga0059261_0172 at 159.436 kb on + strand, within Ga0059261_0172 at 159.437 kb on - strand, within Ga0059261_0172 at 159.482 kb on + strand, within Ga0059261_0172 at 159.482 kb on + strand, within Ga0059261_0172 at 159.483 kb on - strand, within Ga0059261_0172 at 159.782 kb on - strand, within Ga0059261_0173 at 159.782 kb on - strand, within Ga0059261_0173 at 160.052 kb on - strand, within Ga0059261_0173 at 160.198 kb on + strand, within Ga0059261_0174 at 160.199 kb on - strand, within Ga0059261_0174 at 160.257 kb on + strand, within Ga0059261_0174 at 160.258 kb on - strand, within Ga0059261_0174 at 160.408 kb on + strand, within Ga0059261_0175 at 160.408 kb on + strand, within Ga0059261_0175 at 160.408 kb on + strand, within Ga0059261_0175 at 160.408 kb on + strand, within Ga0059261_0175 at 160.539 kb on + strand, within Ga0059261_0175 at 160.540 kb on - strand at 160.540 kb on - strand, within Ga0059261_0175 at 160.540 kb on - strand, within Ga0059261_0175 at 160.593 kb on + strand, within Ga0059261_0175 at 160.594 kb on - strand at 160.594 kb on - strand, within Ga0059261_0175 at 160.595 kb on + strand, within Ga0059261_0175 at 160.595 kb on + strand at 160.595 kb on + strand, within Ga0059261_0175 at 160.595 kb on + strand, within Ga0059261_0175 at 160.596 kb on - strand, within Ga0059261_0175 at 160.596 kb on - strand, within Ga0059261_0175 at 160.596 kb on - strand, within Ga0059261_0175 at 160.769 kb on + strand, within Ga0059261_0175 at 160.769 kb on + strand at 160.769 kb on + strand, within Ga0059261_0175 at 160.769 kb on + strand, within Ga0059261_0175 at 160.769 kb on + strand, within Ga0059261_0175 at 160.769 kb on + strand, within Ga0059261_0175 at 160.769 kb on + strand, within Ga0059261_0175 at 160.769 kb on + strand, within Ga0059261_0175 at 160.769 kb on + strand at 160.770 kb on - strand, within Ga0059261_0175 at 160.837 kb on - strand, within Ga0059261_0175 at 160.837 kb on - strand, within Ga0059261_0175 at 160.838 kb on + strand, within Ga0059261_0175 at 160.838 kb on + strand at 160.838 kb on + strand at 160.838 kb on + strand, within Ga0059261_0175 at 160.838 kb on + strand, within Ga0059261_0175 at 160.838 kb on + strand, within Ga0059261_0175 at 160.838 kb on + strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.868 kb on + strand, within Ga0059261_0175 at 160.868 kb on + strand, within Ga0059261_0175 at 160.869 kb on - strand, within Ga0059261_0175 at 160.966 kb on + strand at 160.966 kb on + strand at 160.966 kb on + strand at 161.019 kb on - strand at 161.019 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1.25 mM remove 159,192 - Ga0059261_0172 0.72 -1.8 159,192 - Ga0059261_0172 0.72 -2.2 159,200 + Ga0059261_0172 0.73 -2.2 159,321 - Ga0059261_0172 0.79 -0.1 159,321 - Ga0059261_0172 0.79 +0.1 159,436 + Ga0059261_0172 0.85 -0.5 159,437 - Ga0059261_0172 0.85 +0.5 159,482 + Ga0059261_0172 0.87 -1.7 159,482 + Ga0059261_0172 0.87 +0.7 159,483 - Ga0059261_0172 0.87 -0.5 159,782 - Ga0059261_0173 0.13 -1.1 159,782 - Ga0059261_0173 0.13 -2.1 160,052 - Ga0059261_0173 0.75 -1.2 160,198 + Ga0059261_0174 0.31 -1.4 160,199 - Ga0059261_0174 0.32 -0.7 160,257 + Ga0059261_0174 0.76 -1.7 160,258 - Ga0059261_0174 0.77 -2.0 160,408 + Ga0059261_0175 0.17 -0.2 160,408 + Ga0059261_0175 0.17 +0.4 160,408 + Ga0059261_0175 0.17 -0.2 160,408 + Ga0059261_0175 0.17 -1.5 160,539 + Ga0059261_0175 0.35 -0.5 160,540 - -0.5 160,540 - Ga0059261_0175 0.36 +0.4 160,540 - Ga0059261_0175 0.36 +0.5 160,593 + Ga0059261_0175 0.43 -0.5 160,594 - +0.1 160,594 - Ga0059261_0175 0.43 -0.9 160,595 + Ga0059261_0175 0.43 -2.0 160,595 + -0.9 160,595 + Ga0059261_0175 0.43 -1.9 160,595 + Ga0059261_0175 0.43 -2.2 160,596 - Ga0059261_0175 0.43 -2.1 160,596 - Ga0059261_0175 0.43 -1.8 160,596 - Ga0059261_0175 0.43 -2.0 160,769 + Ga0059261_0175 0.68 -1.2 160,769 + +1.1 160,769 + Ga0059261_0175 0.68 -1.5 160,769 + Ga0059261_0175 0.68 +0.7 160,769 + Ga0059261_0175 0.68 -0.8 160,769 + Ga0059261_0175 0.68 -0.2 160,769 + Ga0059261_0175 0.68 -1.2 160,769 + Ga0059261_0175 0.68 -2.1 160,769 + +0.1 160,770 - Ga0059261_0175 0.68 -1.5 160,837 - Ga0059261_0175 0.77 -2.4 160,837 - Ga0059261_0175 0.77 -2.1 160,838 + Ga0059261_0175 0.77 -1.5 160,838 + -0.9 160,838 + -0.5 160,838 + Ga0059261_0175 0.77 -2.4 160,838 + Ga0059261_0175 0.77 -0.9 160,838 + Ga0059261_0175 0.77 -2.5 160,838 + Ga0059261_0175 0.77 -2.7 160,839 - Ga0059261_0175 0.77 -2.6 160,839 - Ga0059261_0175 0.77 -1.9 160,839 - Ga0059261_0175 0.77 -1.4 160,839 - Ga0059261_0175 0.77 +0.7 160,839 - Ga0059261_0175 0.77 -0.5 160,839 - Ga0059261_0175 0.77 -1.4 160,839 - +0.1 160,839 - Ga0059261_0175 0.77 -2.1 160,839 - Ga0059261_0175 0.77 -0.9 160,839 - Ga0059261_0175 0.77 -0.5 160,839 - Ga0059261_0175 0.77 -1.1 160,839 - Ga0059261_0175 0.77 -3.1 160,868 + Ga0059261_0175 0.81 -2.5 160,868 + Ga0059261_0175 0.81 -1.6 160,869 - Ga0059261_0175 0.81 +0.7 160,966 + -1.9 160,966 + -1.2 160,966 + +0.1 161,019 - +0.5 161,019 - +0.5
Or see this region's nucleotide sequence