Experiment: Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0169 and Ga0059261_0170 overlap by 4 nucleotides Ga0059261_0170 and Ga0059261_0171 overlap by 4 nucleotides Ga0059261_0171 and Ga0059261_0172 overlap by 4 nucleotides Ga0059261_0172 and Ga0059261_0173 overlap by 4 nucleotides Ga0059261_0173 and Ga0059261_0174 overlap by 4 nucleotides Ga0059261_0174 and Ga0059261_0175 overlap by 4 nucleotides
Ga0059261_0169: Ga0059261_0169 - hypothetical protein, at 156,250 to 156,900
_0169
Ga0059261_0170: Ga0059261_0170 - Uncharacterized protein involved in biosynthesis of c-type cytochromes, at 156,897 to 157,274
_0170
Ga0059261_0171: Ga0059261_0171 - Thiol-disulfide isomerase and thioredoxins, at 157,271 to 157,798
_0171
Ga0059261_0172: Ga0059261_0172 - Cytochrome c biogenesis factor, at 157,795 to 159,729
_0172
Ga0059261_0173: Ga0059261_0173 - Cytochrome c-type biogenesis protein CcmE, at 159,726 to 160,160
_0173
Ga0059261_0174: Ga0059261_0174 - hypothetical protein, at 160,157 to 160,288
_0174
Ga0059261_0175: Ga0059261_0175 - heme exporter protein CcmC, at 160,285 to 161,001
_0175
Position (kb) 157
158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 156.825 kb on + strand, within Ga0059261_0169 at 156.825 kb on + strand, within Ga0059261_0169 at 156.825 kb on + strand, within Ga0059261_0169 at 156.826 kb on - strand, within Ga0059261_0169 at 156.826 kb on - strand, within Ga0059261_0169 at 156.826 kb on - strand, within Ga0059261_0169 at 156.826 kb on - strand, within Ga0059261_0169 at 156.826 kb on - strand, within Ga0059261_0169 at 156.826 kb on - strand, within Ga0059261_0169 at 156.875 kb on - strand at 156.902 kb on + strand at 156.902 kb on + strand at 156.903 kb on - strand at 156.903 kb on - strand at 157.006 kb on + strand, within Ga0059261_0170 at 157.006 kb on + strand, within Ga0059261_0170 at 157.007 kb on - strand, within Ga0059261_0170 at 157.015 kb on + strand at 157.015 kb on + strand, within Ga0059261_0170 at 157.016 kb on - strand, within Ga0059261_0170 at 157.016 kb on - strand, within Ga0059261_0170 at 157.016 kb on - strand at 157.016 kb on - strand, within Ga0059261_0170 at 157.016 kb on - strand, within Ga0059261_0170 at 157.024 kb on + strand, within Ga0059261_0170 at 157.024 kb on + strand, within Ga0059261_0170 at 157.112 kb on + strand, within Ga0059261_0170 at 157.113 kb on - strand, within Ga0059261_0170 at 157.113 kb on - strand, within Ga0059261_0170 at 157.113 kb on - strand at 157.113 kb on - strand, within Ga0059261_0170 at 157.219 kb on + strand, within Ga0059261_0170 at 157.333 kb on + strand, within Ga0059261_0171 at 157.443 kb on + strand, within Ga0059261_0171 at 157.444 kb on - strand, within Ga0059261_0171 at 157.444 kb on - strand, within Ga0059261_0171 at 157.746 kb on - strand at 157.823 kb on - strand at 157.823 kb on - strand at 157.823 kb on - strand at 157.933 kb on + strand at 157.933 kb on + strand at 157.933 kb on + strand at 157.933 kb on + strand at 157.934 kb on - strand at 157.934 kb on - strand at 157.934 kb on - strand at 157.934 kb on - strand at 157.970 kb on - strand at 157.976 kb on + strand at 157.976 kb on + strand at 157.977 kb on - strand at 157.977 kb on - strand at 157.977 kb on - strand at 158.019 kb on + strand, within Ga0059261_0172 at 158.039 kb on + strand, within Ga0059261_0172 at 158.040 kb on - strand at 158.040 kb on - strand, within Ga0059261_0172 at 158.040 kb on - strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.180 kb on + strand, within Ga0059261_0172 at 158.181 kb on - strand, within Ga0059261_0172 at 158.181 kb on - strand, within Ga0059261_0172 at 158.181 kb on - strand, within Ga0059261_0172 at 158.181 kb on - strand, within Ga0059261_0172 at 158.181 kb on - strand, within Ga0059261_0172 at 158.183 kb on + strand, within Ga0059261_0172 at 158.183 kb on + strand, within Ga0059261_0172 at 158.184 kb on - strand, within Ga0059261_0172 at 158.196 kb on - strand, within Ga0059261_0172 at 158.196 kb on - strand, within Ga0059261_0172 at 158.312 kb on - strand, within Ga0059261_0172 at 158.674 kb on + strand, within Ga0059261_0172 at 158.745 kb on - strand, within Ga0059261_0172 at 158.768 kb on + strand, within Ga0059261_0172 at 158.768 kb on + strand, within Ga0059261_0172 at 158.768 kb on + strand, within Ga0059261_0172 at 158.768 kb on + strand, within Ga0059261_0172 at 158.768 kb on + strand, within Ga0059261_0172 at 158.768 kb on + strand, within Ga0059261_0172 at 158.769 kb on - strand, within Ga0059261_0172 at 158.769 kb on - strand, within Ga0059261_0172 at 159.031 kb on + strand at 159.031 kb on + strand at 159.032 kb on - strand, within Ga0059261_0172 at 159.032 kb on - strand, within Ga0059261_0172 at 159.032 kb on - strand, within Ga0059261_0172 at 159.039 kb on - strand at 159.041 kb on + strand, within Ga0059261_0172 at 159.041 kb on + strand, within Ga0059261_0172 at 159.050 kb on + strand, within Ga0059261_0172 at 159.050 kb on + strand, within Ga0059261_0172 at 159.050 kb on + strand, within Ga0059261_0172 at 159.051 kb on - strand, within Ga0059261_0172 at 159.098 kb on - strand, within Ga0059261_0172 at 159.098 kb on - strand, within Ga0059261_0172 at 159.192 kb on - strand, within Ga0059261_0172 at 159.192 kb on - strand, within Ga0059261_0172 at 159.200 kb on + strand, within Ga0059261_0172 at 159.321 kb on - strand, within Ga0059261_0172 at 159.321 kb on - strand, within Ga0059261_0172 at 159.436 kb on + strand, within Ga0059261_0172 at 159.437 kb on - strand, within Ga0059261_0172 at 159.482 kb on + strand, within Ga0059261_0172 at 159.482 kb on + strand, within Ga0059261_0172 at 159.483 kb on - strand, within Ga0059261_0172 at 159.782 kb on - strand, within Ga0059261_0173 at 159.782 kb on - strand, within Ga0059261_0173 at 160.052 kb on - strand, within Ga0059261_0173 at 160.198 kb on + strand, within Ga0059261_0174 at 160.199 kb on - strand, within Ga0059261_0174 at 160.257 kb on + strand, within Ga0059261_0174 at 160.258 kb on - strand, within Ga0059261_0174 at 160.408 kb on + strand, within Ga0059261_0175 at 160.408 kb on + strand, within Ga0059261_0175 at 160.408 kb on + strand, within Ga0059261_0175 at 160.408 kb on + strand, within Ga0059261_0175 at 160.539 kb on + strand, within Ga0059261_0175 at 160.540 kb on - strand at 160.540 kb on - strand, within Ga0059261_0175 at 160.540 kb on - strand, within Ga0059261_0175 at 160.593 kb on + strand, within Ga0059261_0175 at 160.594 kb on - strand at 160.594 kb on - strand, within Ga0059261_0175 at 160.595 kb on + strand, within Ga0059261_0175 at 160.595 kb on + strand at 160.595 kb on + strand, within Ga0059261_0175 at 160.595 kb on + strand, within Ga0059261_0175 at 160.596 kb on - strand, within Ga0059261_0175 at 160.596 kb on - strand, within Ga0059261_0175 at 160.596 kb on - strand, within Ga0059261_0175
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1.25 mM remove 156,825 + Ga0059261_0169 0.88 -0.4 156,825 + Ga0059261_0169 0.88 -0.7 156,825 + Ga0059261_0169 0.88 -0.4 156,826 - Ga0059261_0169 0.88 -1.5 156,826 - Ga0059261_0169 0.88 +1.1 156,826 - Ga0059261_0169 0.88 +1.1 156,826 - Ga0059261_0169 0.88 +0.4 156,826 - Ga0059261_0169 0.88 -0.2 156,826 - Ga0059261_0169 0.88 -0.4 156,875 - +0.7 156,902 + +0.5 156,902 + -0.8 156,903 - +0.5 156,903 - -0.8 157,006 + Ga0059261_0170 0.29 +2.1 157,006 + Ga0059261_0170 0.29 -1.1 157,007 - Ga0059261_0170 0.29 -1.2 157,015 + +1.1 157,015 + Ga0059261_0170 0.31 -0.9 157,016 - Ga0059261_0170 0.31 -1.6 157,016 - Ga0059261_0170 0.31 -1.5 157,016 - -0.2 157,016 - Ga0059261_0170 0.31 -1.5 157,016 - Ga0059261_0170 0.31 -2.8 157,024 + Ga0059261_0170 0.34 -2.2 157,024 + Ga0059261_0170 0.34 -2.7 157,112 + Ga0059261_0170 0.57 -2.2 157,113 - Ga0059261_0170 0.57 -1.4 157,113 - Ga0059261_0170 0.57 -2.1 157,113 - +1.1 157,113 - Ga0059261_0170 0.57 -2.1 157,219 + Ga0059261_0170 0.85 -0.1 157,333 + Ga0059261_0171 0.12 -1.5 157,443 + Ga0059261_0171 0.33 -1.7 157,444 - Ga0059261_0171 0.33 -1.9 157,444 - Ga0059261_0171 0.33 -0.9 157,746 - -0.7 157,823 - -0.3 157,823 - +0.6 157,823 - -0.2 157,933 + -0.7 157,933 + -1.8 157,933 + -1.5 157,933 + -1.2 157,934 - -0.9 157,934 - -0.5 157,934 - -0.7 157,934 - -2.4 157,970 - -1.2 157,976 + +0.1 157,976 + -0.9 157,977 - -2.1 157,977 - -0.5 157,977 - -1.4 158,019 + Ga0059261_0172 0.12 -0.5 158,039 + Ga0059261_0172 0.13 -2.1 158,040 - -0.5 158,040 - Ga0059261_0172 0.13 -1.5 158,040 - Ga0059261_0172 0.13 -1.2 158,180 + Ga0059261_0172 0.20 -1.6 158,180 + Ga0059261_0172 0.20 +0.4 158,180 + Ga0059261_0172 0.20 -0.1 158,180 + Ga0059261_0172 0.20 -1.2 158,180 + Ga0059261_0172 0.20 -0.5 158,180 + Ga0059261_0172 0.20 -2.2 158,180 + Ga0059261_0172 0.20 -1.9 158,180 + Ga0059261_0172 0.20 -1.0 158,180 + Ga0059261_0172 0.20 -0.5 158,181 - Ga0059261_0172 0.20 -2.6 158,181 - Ga0059261_0172 0.20 -0.5 158,181 - Ga0059261_0172 0.20 -1.5 158,181 - Ga0059261_0172 0.20 -1.9 158,181 - Ga0059261_0172 0.20 +0.2 158,183 + Ga0059261_0172 0.20 -0.5 158,183 + Ga0059261_0172 0.20 -1.9 158,184 - Ga0059261_0172 0.20 +1.1 158,196 - Ga0059261_0172 0.21 -3.7 158,196 - Ga0059261_0172 0.21 -1.2 158,312 - Ga0059261_0172 0.27 -1.3 158,674 + Ga0059261_0172 0.45 -1.9 158,745 - Ga0059261_0172 0.49 -0.9 158,768 + Ga0059261_0172 0.50 -2.6 158,768 + Ga0059261_0172 0.50 -1.1 158,768 + Ga0059261_0172 0.50 -2.2 158,768 + Ga0059261_0172 0.50 -1.0 158,768 + Ga0059261_0172 0.50 -1.5 158,768 + Ga0059261_0172 0.50 -2.1 158,769 - Ga0059261_0172 0.50 -2.7 158,769 - Ga0059261_0172 0.50 -0.7 159,031 + -0.2 159,031 + -0.5 159,032 - Ga0059261_0172 0.64 -1.3 159,032 - Ga0059261_0172 0.64 +1.1 159,032 - Ga0059261_0172 0.64 -1.2 159,039 - +0.1 159,041 + Ga0059261_0172 0.64 +0.1 159,041 + Ga0059261_0172 0.64 -1.2 159,050 + Ga0059261_0172 0.65 -0.5 159,050 + Ga0059261_0172 0.65 -1.8 159,050 + Ga0059261_0172 0.65 +0.1 159,051 - Ga0059261_0172 0.65 +0.5 159,098 - Ga0059261_0172 0.67 -1.7 159,098 - Ga0059261_0172 0.67 -3.4 159,192 - Ga0059261_0172 0.72 -1.8 159,192 - Ga0059261_0172 0.72 -2.2 159,200 + Ga0059261_0172 0.73 -2.2 159,321 - Ga0059261_0172 0.79 -0.1 159,321 - Ga0059261_0172 0.79 +0.1 159,436 + Ga0059261_0172 0.85 -0.5 159,437 - Ga0059261_0172 0.85 +0.5 159,482 + Ga0059261_0172 0.87 -1.7 159,482 + Ga0059261_0172 0.87 +0.7 159,483 - Ga0059261_0172 0.87 -0.5 159,782 - Ga0059261_0173 0.13 -1.1 159,782 - Ga0059261_0173 0.13 -2.1 160,052 - Ga0059261_0173 0.75 -1.2 160,198 + Ga0059261_0174 0.31 -1.4 160,199 - Ga0059261_0174 0.32 -0.7 160,257 + Ga0059261_0174 0.76 -1.7 160,258 - Ga0059261_0174 0.77 -2.0 160,408 + Ga0059261_0175 0.17 -0.2 160,408 + Ga0059261_0175 0.17 +0.4 160,408 + Ga0059261_0175 0.17 -0.2 160,408 + Ga0059261_0175 0.17 -1.5 160,539 + Ga0059261_0175 0.35 -0.5 160,540 - -0.5 160,540 - Ga0059261_0175 0.36 +0.4 160,540 - Ga0059261_0175 0.36 +0.5 160,593 + Ga0059261_0175 0.43 -0.5 160,594 - +0.1 160,594 - Ga0059261_0175 0.43 -0.9 160,595 + Ga0059261_0175 0.43 -2.0 160,595 + -0.9 160,595 + Ga0059261_0175 0.43 -1.9 160,595 + Ga0059261_0175 0.43 -2.2 160,596 - Ga0059261_0175 0.43 -2.1 160,596 - Ga0059261_0175 0.43 -1.8 160,596 - Ga0059261_0175 0.43 -2.0
Or see this region's nucleotide sequence