Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0084

Experiment: Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0083 and Ga0059261_0084 are separated by 19 nucleotidesGa0059261_0084 and Ga0059261_0085 are separated by 104 nucleotidesGa0059261_0085 and Ga0059261_0086 are separated by 3 nucleotides Ga0059261_0083: Ga0059261_0083 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC 6.3.5.-), at 76,484 to 77,944 _0083 Ga0059261_0084: Ga0059261_0084 - hypothetical protein, at 77,964 to 78,458 _0084 Ga0059261_0085: Ga0059261_0085 - hypothetical protein, at 78,563 to 79,408 _0085 Ga0059261_0086: Ga0059261_0086 - hypothetical protein, at 79,412 to 80,038 _0086 Position (kb) 77 78 79Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 77.307 kb on - strand, within Ga0059261_0083at 77.972 kb on + strandat 77.972 kb on + strandat 77.972 kb on + strandat 77.972 kb on + strandat 77.972 kb on + strandat 77.972 kb on + strandat 77.973 kb on - strandat 77.973 kb on - strandat 77.973 kb on - strandat 77.973 kb on - strandat 77.973 kb on - strandat 78.064 kb on - strand, within Ga0059261_0084at 78.120 kb on + strand, within Ga0059261_0084at 78.120 kb on + strand, within Ga0059261_0084at 78.121 kb on - strand, within Ga0059261_0084at 78.456 kb on + strandat 78.456 kb on + strandat 78.474 kb on + strandat 78.474 kb on + strandat 78.475 kb on - strandat 78.475 kb on - strandat 78.475 kb on - strandat 78.481 kb on + strandat 78.482 kb on - strandat 78.482 kb on - strandat 78.482 kb on - strandat 78.494 kb on + strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.585 kb on + strandat 78.585 kb on + strandat 78.585 kb on + strandat 78.585 kb on + strandat 78.606 kb on + strandat 78.606 kb on + strandat 78.607 kb on - strandat 78.634 kb on + strandat 78.634 kb on + strandat 78.634 kb on + strandat 78.634 kb on + strandat 78.635 kb on - strandat 78.635 kb on - strandat 78.635 kb on - strandat 78.638 kb on + strandat 78.638 kb on + strandat 78.638 kb on + strandat 78.638 kb on + strandat 78.638 kb on + strandat 78.639 kb on - strandat 78.639 kb on - strandat 78.639 kb on - strandat 78.639 kb on - strandat 78.639 kb on - strandat 78.639 kb on - strandat 78.639 kb on - strandat 78.639 kb on - strandat 78.639 kb on - strandat 78.639 kb on - strandat 78.683 kb on + strand, within Ga0059261_0085at 78.684 kb on - strand, within Ga0059261_0085at 78.684 kb on - strand, within Ga0059261_0085at 78.684 kb on - strand, within Ga0059261_0085at 78.706 kb on + strand, within Ga0059261_0085at 78.790 kb on + strand, within Ga0059261_0085at 78.839 kb on - strand, within Ga0059261_0085at 78.839 kb on - strand, within Ga0059261_0085at 79.010 kb on + strand, within Ga0059261_0085at 79.010 kb on + strand, within Ga0059261_0085at 79.010 kb on + strandat 79.010 kb on + strand, within Ga0059261_0085at 79.010 kb on + strand, within Ga0059261_0085at 79.010 kb on + strand, within Ga0059261_0085at 79.011 kb on - strand, within Ga0059261_0085at 79.013 kb on + strand, within Ga0059261_0085at 79.013 kb on + strand, within Ga0059261_0085at 79.022 kb on + strand, within Ga0059261_0085at 79.022 kb on + strand, within Ga0059261_0085at 79.022 kb on + strand, within Ga0059261_0085at 79.023 kb on - strand, within Ga0059261_0085at 79.023 kb on - strand, within Ga0059261_0085at 79.024 kb on + strand, within Ga0059261_0085at 79.024 kb on + strand, within Ga0059261_0085at 79.025 kb on - strand, within Ga0059261_0085at 79.025 kb on - strand, within Ga0059261_0085at 79.057 kb on + strand, within Ga0059261_0085at 79.057 kb on + strand, within Ga0059261_0085at 79.058 kb on - strand, within Ga0059261_0085at 79.084 kb on + strand, within Ga0059261_0085at 79.084 kb on + strand, within Ga0059261_0085at 79.085 kb on - strand, within Ga0059261_0085at 79.085 kb on - strand, within Ga0059261_0085at 79.085 kb on - strandat 79.085 kb on - strand, within Ga0059261_0085at 79.089 kb on + strand, within Ga0059261_0085at 79.090 kb on - strand, within Ga0059261_0085at 79.090 kb on - strand, within Ga0059261_0085at 79.241 kb on - strand, within Ga0059261_0085at 79.266 kb on - strandat 79.406 kb on + strandat 79.407 kb on - strandat 79.407 kb on - strandat 79.437 kb on + strandat 79.437 kb on + strandat 79.437 kb on + strandat 79.438 kb on - strandat 79.438 kb on - strandat 79.438 kb on - strandat 79.438 kb on - strandat 79.438 kb on - strandat 79.447 kb on + strandat 79.447 kb on + strandat 79.448 kb on - strandat 79.448 kb on - strandat 79.448 kb on - strandat 79.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1.25 mM
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77,307 - Ga0059261_0083 0.56 -0.4
77,972 + -1.2
77,972 + +0.4
77,972 + -0.3
77,972 + +0.5
77,972 + -0.4
77,972 + -1.1
77,973 - -0.7
77,973 - +0.1
77,973 - +0.9
77,973 - +1.8
77,973 - -0.5
78,064 - Ga0059261_0084 0.20 -0.5
78,120 + Ga0059261_0084 0.32 -1.8
78,120 + Ga0059261_0084 0.32 -0.9
78,121 - Ga0059261_0084 0.32 -0.2
78,456 + +0.1
78,456 + -1.0
78,474 + -0.7
78,474 + -1.6
78,475 - -1.4
78,475 - -0.3
78,475 - -0.7
78,481 + -0.8
78,482 - -0.5
78,482 - +0.2
78,482 - -0.2
78,494 + -0.1
78,518 + -0.0
78,518 + -1.1
78,518 + +0.9
78,585 + -0.3
78,585 + -0.1
78,585 + +0.0
78,585 + +0.1
78,606 + +1.0
78,606 + +1.1
78,607 - +0.1
78,634 + +0.1
78,634 + -0.6
78,634 + -1.6
78,634 + -0.8
78,635 - +0.4
78,635 - -0.6
78,635 - -2.5
78,638 + +0.3
78,638 + +2.1
78,638 + -0.0
78,638 + -0.3
78,638 + -0.5
78,639 - +2.5
78,639 - -0.1
78,639 - +0.3
78,639 - -0.0
78,639 - +0.5
78,639 - -0.5
78,639 - +0.7
78,639 - -0.1
78,639 - -1.1
78,639 - +0.6
78,683 + Ga0059261_0085 0.14 -0.2
78,684 - Ga0059261_0085 0.14 +0.7
78,684 - Ga0059261_0085 0.14 -0.3
78,684 - Ga0059261_0085 0.14 +4.1
78,706 + Ga0059261_0085 0.17 +0.3
78,790 + Ga0059261_0085 0.27 +0.2
78,839 - Ga0059261_0085 0.33 +0.5
78,839 - Ga0059261_0085 0.33 +0.4
79,010 + Ga0059261_0085 0.53 -0.5
79,010 + Ga0059261_0085 0.53 -0.2
79,010 + -0.5
79,010 + Ga0059261_0085 0.53 -1.4
79,010 + Ga0059261_0085 0.53 +0.2
79,010 + Ga0059261_0085 0.53 -1.2
79,011 - Ga0059261_0085 0.53 -0.2
79,013 + Ga0059261_0085 0.53 +0.3
79,013 + Ga0059261_0085 0.53 +0.4
79,022 + Ga0059261_0085 0.54 -0.0
79,022 + Ga0059261_0085 0.54 +2.5
79,022 + Ga0059261_0085 0.54 +0.8
79,023 - Ga0059261_0085 0.54 -1.3
79,023 - Ga0059261_0085 0.54 -0.2
79,024 + Ga0059261_0085 0.54 +0.2
79,024 + Ga0059261_0085 0.54 +0.2
79,025 - Ga0059261_0085 0.55 +0.3
79,025 - Ga0059261_0085 0.55 +0.1
79,057 + Ga0059261_0085 0.58 +0.0
79,057 + Ga0059261_0085 0.58 +0.9
79,058 - Ga0059261_0085 0.59 +0.5
79,084 + Ga0059261_0085 0.62 -0.4
79,084 + Ga0059261_0085 0.62 +0.7
79,085 - Ga0059261_0085 0.62 -0.5
79,085 - Ga0059261_0085 0.62 -0.2
79,085 - +0.8
79,085 - Ga0059261_0085 0.62 -0.2
79,089 + Ga0059261_0085 0.62 +0.9
79,090 - Ga0059261_0085 0.62 +0.5
79,090 - Ga0059261_0085 0.62 -0.8
79,241 - Ga0059261_0085 0.80 -0.6
79,266 - +1.1
79,406 + +0.1
79,407 - +0.5
79,407 - -0.7
79,437 + -1.0
79,437 + -0.7
79,437 + +0.3
79,438 - +1.5
79,438 - -2.4
79,438 - -0.2
79,438 - +0.7
79,438 - -0.2
79,447 + +0.7
79,447 + +0.3
79,448 - -0.7
79,448 - +0.3
79,448 - +0.2
79,448 - +0.1

Or see this region's nucleotide sequence