Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03940

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00796 and CCNA_03940 are separated by 109 nucleotidesCCNA_03940 and CCNA_00798 are separated by 8 nucleotides CCNA_00796: CCNA_00796 - oxygen sensory histidine kinase FixL, at 859,581 to 861,068 _00796 CCNA_03940: CCNA_03940 - hypothetical protein, at 861,178 to 861,285 _03940 CCNA_00798: CCNA_00798 - ABC transporter, ATP-binding protein cydC, at 861,294 to 862,892 _00798 Position (kb) 861 862Strain fitness (log2 ratio) -2 -1 0 1 2 3at 860.257 kb on - strand, within CCNA_00796at 860.276 kb on - strand, within CCNA_00796at 860.277 kb on - strand, within CCNA_00796at 860.318 kb on - strand, within CCNA_00796at 860.359 kb on - strand, within CCNA_00796at 860.474 kb on - strand, within CCNA_00796at 860.490 kb on + strand, within CCNA_00796at 860.490 kb on + strand, within CCNA_00796at 860.629 kb on - strand, within CCNA_00796at 860.687 kb on - strand, within CCNA_00796at 860.708 kb on - strand, within CCNA_00796at 860.756 kb on - strand, within CCNA_00796at 860.759 kb on + strand, within CCNA_00796at 860.761 kb on - strand, within CCNA_00796at 860.797 kb on + strand, within CCNA_00796at 860.805 kb on - strand, within CCNA_00796at 860.805 kb on - strand, within CCNA_00796at 860.805 kb on - strand, within CCNA_00796at 860.836 kb on - strand, within CCNA_00796at 860.836 kb on - strand, within CCNA_00796at 860.841 kb on - strand, within CCNA_00796at 860.850 kb on + strand, within CCNA_00796at 860.858 kb on - strand, within CCNA_00796at 860.870 kb on + strand, within CCNA_00796at 860.870 kb on + strand, within CCNA_00796at 860.870 kb on + strand, within CCNA_00796at 860.876 kb on + strand, within CCNA_00796at 860.878 kb on - strand, within CCNA_00796at 860.878 kb on - strand, within CCNA_00796at 860.878 kb on - strand, within CCNA_00796at 860.894 kb on - strand, within CCNA_00796at 860.901 kb on + strand, within CCNA_00796at 860.901 kb on + strand, within CCNA_00796at 860.904 kb on - strand, within CCNA_00796at 860.909 kb on - strand, within CCNA_00796at 860.909 kb on - strand, within CCNA_00796at 860.932 kb on - strandat 860.967 kb on - strandat 861.028 kb on + strandat 861.028 kb on + strandat 861.042 kb on + strandat 861.121 kb on - strandat 861.121 kb on - strandat 861.124 kb on + strandat 861.124 kb on + strandat 861.131 kb on - strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.137 kb on + strandat 861.137 kb on + strandat 861.147 kb on + strandat 861.153 kb on + strandat 861.153 kb on + strandat 861.250 kb on - strand, within CCNA_03940at 861.252 kb on + strand, within CCNA_03940at 861.260 kb on - strand, within CCNA_03940at 861.268 kb on - strand, within CCNA_03940at 861.309 kb on - strandat 861.315 kb on + strandat 861.361 kb on - strandat 861.405 kb on + strandat 861.474 kb on + strand, within CCNA_00798at 861.482 kb on - strand, within CCNA_00798at 861.482 kb on - strand, within CCNA_00798at 861.482 kb on - strand, within CCNA_00798at 861.505 kb on + strand, within CCNA_00798at 861.529 kb on + strand, within CCNA_00798at 861.534 kb on + strand, within CCNA_00798at 861.539 kb on + strand, within CCNA_00798at 861.540 kb on + strand, within CCNA_00798at 861.542 kb on - strand, within CCNA_00798at 861.602 kb on - strand, within CCNA_00798at 861.602 kb on - strand, within CCNA_00798at 861.602 kb on - strand, within CCNA_00798at 861.616 kb on + strand, within CCNA_00798at 861.655 kb on + strand, within CCNA_00798at 861.655 kb on + strand, within CCNA_00798at 861.655 kb on + strand, within CCNA_00798at 861.663 kb on - strand, within CCNA_00798at 861.764 kb on + strand, within CCNA_00798at 861.764 kb on + strand, within CCNA_00798at 861.788 kb on + strand, within CCNA_00798at 861.796 kb on - strand, within CCNA_00798at 861.796 kb on - strand, within CCNA_00798at 861.825 kb on + strand, within CCNA_00798at 861.840 kb on - strand, within CCNA_00798at 861.841 kb on - strand, within CCNA_00798at 861.866 kb on + strand, within CCNA_00798at 861.874 kb on - strand, within CCNA_00798at 861.874 kb on - strand, within CCNA_00798at 861.874 kb on - strand, within CCNA_00798at 861.889 kb on - strand, within CCNA_00798at 861.889 kb on - strand, within CCNA_00798at 861.889 kb on - strand, within CCNA_00798at 861.891 kb on - strand, within CCNA_00798at 861.891 kb on - strand, within CCNA_00798at 861.891 kb on - strand, within CCNA_00798at 861.919 kb on + strand, within CCNA_00798at 861.919 kb on + strand, within CCNA_00798at 861.919 kb on + strand, within CCNA_00798at 861.927 kb on - strand, within CCNA_00798at 861.941 kb on - strand, within CCNA_00798at 861.945 kb on + strand, within CCNA_00798at 861.945 kb on + strand, within CCNA_00798at 861.951 kb on - strand, within CCNA_00798at 861.953 kb on - strand, within CCNA_00798at 862.013 kb on + strand, within CCNA_00798at 862.013 kb on - strand, within CCNA_00798at 862.058 kb on - strand, within CCNA_00798at 862.130 kb on + strand, within CCNA_00798at 862.131 kb on + strand, within CCNA_00798at 862.133 kb on - strand, within CCNA_00798at 862.177 kb on - strand, within CCNA_00798at 862.214 kb on - strand, within CCNA_00798at 862.228 kb on - strand, within CCNA_00798at 862.277 kb on - strand, within CCNA_00798

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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860,257 - CCNA_00796 0.45 +1.3
860,276 - CCNA_00796 0.47 +1.3
860,277 - CCNA_00796 0.47 +0.8
860,318 - CCNA_00796 0.50 +0.8
860,359 - CCNA_00796 0.52 +1.3
860,474 - CCNA_00796 0.60 -0.5
860,490 + CCNA_00796 0.61 -0.3
860,490 + CCNA_00796 0.61 +0.8
860,629 - CCNA_00796 0.70 -1.0
860,687 - CCNA_00796 0.74 +1.8
860,708 - CCNA_00796 0.76 +1.8
860,756 - CCNA_00796 0.79 +1.3
860,759 + CCNA_00796 0.79 +0.3
860,761 - CCNA_00796 0.79 +0.8
860,797 + CCNA_00796 0.82 +0.3
860,805 - CCNA_00796 0.82 +1.3
860,805 - CCNA_00796 0.82 +0.5
860,805 - CCNA_00796 0.82 -0.2
860,836 - CCNA_00796 0.84 +0.5
860,836 - CCNA_00796 0.84 +1.3
860,841 - CCNA_00796 0.85 +1.3
860,850 + CCNA_00796 0.85 +0.8
860,858 - CCNA_00796 0.86 +1.8
860,870 + CCNA_00796 0.87 +2.8
860,870 + CCNA_00796 0.87 -0.2
860,870 + CCNA_00796 0.87 -0.6
860,876 + CCNA_00796 0.87 +1.8
860,878 - CCNA_00796 0.87 -0.6
860,878 - CCNA_00796 0.87 +1.8
860,878 - CCNA_00796 0.87 +1.8
860,894 - CCNA_00796 0.88 -0.5
860,901 + CCNA_00796 0.89 +0.3
860,901 + CCNA_00796 0.89 +0.3
860,904 - CCNA_00796 0.89 +0.0
860,909 - CCNA_00796 0.89 +0.8
860,909 - CCNA_00796 0.89 +1.8
860,932 - +0.3
860,967 - +0.5
861,028 + +2.8
861,028 + +0.7
861,042 + +0.4
861,121 - +0.3
861,121 - +0.2
861,124 + -0.6
861,124 + +0.0
861,131 - -0.3
861,132 - -0.2
861,132 - +0.8
861,132 - -0.2
861,132 - -1.8
861,132 - -2.2
861,137 + +1.3
861,137 + -1.4
861,147 + +0.3
861,153 + -0.7
861,153 + -0.6
861,250 - CCNA_03940 0.67 -1.4
861,252 + CCNA_03940 0.69 +0.5
861,260 - CCNA_03940 0.76 -0.1
861,268 - CCNA_03940 0.83 +3.1
861,309 - -0.3
861,315 + +2.8
861,361 - -0.7
861,405 + +0.5
861,474 + CCNA_00798 0.11 +2.8
861,482 - CCNA_00798 0.12 +0.8
861,482 - CCNA_00798 0.12 +0.8
861,482 - CCNA_00798 0.12 +1.8
861,505 + CCNA_00798 0.13 +1.8
861,529 + CCNA_00798 0.15 +1.3
861,534 + CCNA_00798 0.15 +2.8
861,539 + CCNA_00798 0.15 -0.6
861,540 + CCNA_00798 0.15 +1.3
861,542 - CCNA_00798 0.16 +1.3
861,602 - CCNA_00798 0.19 +1.8
861,602 - CCNA_00798 0.19 +0.0
861,602 - CCNA_00798 0.19 +1.3
861,616 + CCNA_00798 0.20 -1.2
861,655 + CCNA_00798 0.23 +0.5
861,655 + CCNA_00798 0.23 +1.8
861,655 + CCNA_00798 0.23 +0.8
861,663 - CCNA_00798 0.23 +2.8
861,764 + CCNA_00798 0.29 -0.2
861,764 + CCNA_00798 0.29 +1.3
861,788 + CCNA_00798 0.31 +0.3
861,796 - CCNA_00798 0.31 +0.0
861,796 - CCNA_00798 0.31 +0.4
861,825 + CCNA_00798 0.33 +0.8
861,840 - CCNA_00798 0.34 +2.8
861,841 - CCNA_00798 0.34 +2.8
861,866 + CCNA_00798 0.36 +0.3
861,874 - CCNA_00798 0.36 +0.0
861,874 - CCNA_00798 0.36 +1.8
861,874 - CCNA_00798 0.36 -0.2
861,889 - CCNA_00798 0.37 +2.8
861,889 - CCNA_00798 0.37 +0.5
861,889 - CCNA_00798 0.37 +0.3
861,891 - CCNA_00798 0.37 -1.0
861,891 - CCNA_00798 0.37 -2.4
861,891 - CCNA_00798 0.37 -1.3
861,919 + CCNA_00798 0.39 +0.0
861,919 + CCNA_00798 0.39 +1.8
861,919 + CCNA_00798 0.39 +0.5
861,927 - CCNA_00798 0.40 -0.9
861,941 - CCNA_00798 0.40 -0.3
861,945 + CCNA_00798 0.41 +0.3
861,945 + CCNA_00798 0.41 +0.3
861,951 - CCNA_00798 0.41 +0.1
861,953 - CCNA_00798 0.41 +0.8
862,013 + CCNA_00798 0.45 +1.8
862,013 - CCNA_00798 0.45 +0.3
862,058 - CCNA_00798 0.48 +1.8
862,130 + CCNA_00798 0.52 +0.3
862,131 + CCNA_00798 0.52 +1.3
862,133 - CCNA_00798 0.52 +1.8
862,177 - CCNA_00798 0.55 +0.5
862,214 - CCNA_00798 0.58 +2.8
862,228 - CCNA_00798 0.58 +0.3
862,277 - CCNA_00798 0.61 +0.8

Or see this region's nucleotide sequence