Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03929

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03927 and CCNA_03928 are separated by 41 nucleotidesCCNA_03928 and CCNA_00716 are separated by 63 nucleotidesCCNA_00716 and CCNA_03929 are separated by 153 nucleotidesCCNA_03929 and CCNA_00718 are separated by 52 nucleotidesCCNA_00718 and CCNA_03930 are separated by 6 nucleotides CCNA_03927: CCNA_03927 - hypothetical protein, at 770,798 to 771,094 _03927 CCNA_03928: CCNA_03928 - hypothetical protein, at 771,136 to 771,327 _03928 CCNA_00716: CCNA_00716 - hypothetical protein, at 771,391 to 771,567 _00716 CCNA_03929: CCNA_03929 - hypothetical protein, at 771,721 to 771,834 _03929 CCNA_00718: CCNA_00718 - abortive infection protein, at 771,887 to 772,783 _00718 CCNA_03930: CCNA_03930 - hypothetical protein, at 772,790 to 772,894 _03930 Position (kb) 771 772Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 770.768 kb on + strandat 770.789 kb on + strandat 770.794 kb on + strandat 770.833 kb on + strand, within CCNA_03927at 770.833 kb on + strand, within CCNA_03927at 770.993 kb on - strand, within CCNA_03927at 771.000 kb on - strand, within CCNA_03927at 771.024 kb on - strand, within CCNA_03927at 771.031 kb on - strand, within CCNA_03927at 771.033 kb on + strand, within CCNA_03927at 771.041 kb on - strand, within CCNA_03927at 771.109 kb on + strandat 771.109 kb on + strandat 771.114 kb on + strandat 771.133 kb on + strandat 771.133 kb on + strandat 771.135 kb on + strandat 771.135 kb on + strandat 771.143 kb on - strandat 771.176 kb on + strand, within CCNA_03928at 771.181 kb on + strand, within CCNA_03928at 771.184 kb on - strand, within CCNA_03928at 771.189 kb on - strand, within CCNA_03928at 771.194 kb on + strand, within CCNA_03928at 771.213 kb on - strand, within CCNA_03928at 771.213 kb on - strand, within CCNA_03928at 771.213 kb on - strand, within CCNA_03928at 771.232 kb on - strand, within CCNA_03928at 771.232 kb on - strand, within CCNA_03928at 771.232 kb on - strand, within CCNA_03928at 771.232 kb on - strand, within CCNA_03928at 771.239 kb on + strand, within CCNA_03928at 771.259 kb on + strand, within CCNA_03928at 771.260 kb on + strand, within CCNA_03928at 771.260 kb on + strand, within CCNA_03928at 771.273 kb on - strand, within CCNA_03928at 771.277 kb on - strand, within CCNA_03928at 771.277 kb on - strand, within CCNA_03928at 771.277 kb on - strand, within CCNA_03928at 771.306 kb on + strand, within CCNA_03928at 771.316 kb on + strandat 771.336 kb on + strandat 771.344 kb on - strandat 771.344 kb on - strandat 771.373 kb on + strandat 771.378 kb on + strandat 771.378 kb on + strandat 771.381 kb on - strandat 771.381 kb on - strandat 771.386 kb on - strandat 771.396 kb on - strandat 771.397 kb on - strandat 771.406 kb on - strandat 771.406 kb on - strandat 771.427 kb on + strand, within CCNA_00716at 771.428 kb on + strand, within CCNA_00716at 771.431 kb on - strand, within CCNA_00716at 771.448 kb on - strand, within CCNA_00716at 771.449 kb on + strand, within CCNA_00716at 771.449 kb on + strand, within CCNA_00716at 771.457 kb on - strand, within CCNA_00716at 771.457 kb on - strand, within CCNA_00716at 771.475 kb on + strand, within CCNA_00716at 771.475 kb on + strand, within CCNA_00716at 771.540 kb on - strand, within CCNA_00716at 771.560 kb on - strandat 771.564 kb on + strandat 771.653 kb on + strandat 771.653 kb on + strandat 771.653 kb on + strandat 771.653 kb on + strandat 771.661 kb on - strandat 771.682 kb on + strandat 771.683 kb on + strandat 771.696 kb on - strandat 771.696 kb on - strandat 771.719 kb on + strandat 771.719 kb on + strandat 771.719 kb on + strandat 771.727 kb on - strandat 771.727 kb on - strandat 771.727 kb on - strandat 771.727 kb on - strandat 771.732 kb on - strandat 771.773 kb on - strand, within CCNA_03929at 771.806 kb on + strand, within CCNA_03929at 771.810 kb on - strand, within CCNA_03929at 771.840 kb on - strandat 771.852 kb on + strandat 771.869 kb on - strandat 771.875 kb on + strandat 771.886 kb on + strandat 771.893 kb on - strandat 771.893 kb on - strandat 771.901 kb on - strandat 771.913 kb on + strandat 771.921 kb on - strandat 771.940 kb on - strandat 771.962 kb on - strandat 771.962 kb on - strandat 771.963 kb on - strandat 771.976 kb on + strandat 771.984 kb on - strand, within CCNA_00718at 771.984 kb on - strand, within CCNA_00718at 771.984 kb on - strand, within CCNA_00718at 772.005 kb on + strand, within CCNA_00718at 772.005 kb on + strand, within CCNA_00718at 772.005 kb on + strand, within CCNA_00718at 772.005 kb on + strand, within CCNA_00718at 772.005 kb on + strand, within CCNA_00718at 772.005 kb on + strand, within CCNA_00718at 772.007 kb on + strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.020 kb on - strand, within CCNA_00718at 772.066 kb on + strand, within CCNA_00718at 772.100 kb on + strand, within CCNA_00718at 772.107 kb on - strand, within CCNA_00718at 772.115 kb on + strand, within CCNA_00718at 772.130 kb on + strand, within CCNA_00718at 772.130 kb on + strand, within CCNA_00718at 772.130 kb on + strand, within CCNA_00718at 772.130 kb on + strand, within CCNA_00718at 772.169 kb on - strand, within CCNA_00718at 772.212 kb on + strand, within CCNA_00718at 772.218 kb on - strand, within CCNA_00718at 772.218 kb on - strand, within CCNA_00718at 772.218 kb on - strand, within CCNA_00718at 772.229 kb on + strand, within CCNA_00718at 772.285 kb on + strand, within CCNA_00718at 772.341 kb on - strand, within CCNA_00718at 772.355 kb on - strand, within CCNA_00718at 772.355 kb on - strand, within CCNA_00718at 772.356 kb on + strand, within CCNA_00718at 772.358 kb on + strand, within CCNA_00718at 772.366 kb on + strand, within CCNA_00718at 772.389 kb on - strand, within CCNA_00718at 772.389 kb on - strand, within CCNA_00718at 772.389 kb on - strand, within CCNA_00718at 772.390 kb on - strand, within CCNA_00718at 772.432 kb on - strand, within CCNA_00718at 772.432 kb on - strand, within CCNA_00718at 772.432 kb on - strand, within CCNA_00718at 772.447 kb on + strand, within CCNA_00718at 772.447 kb on + strand, within CCNA_00718at 772.455 kb on - strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.471 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.565 kb on + strand, within CCNA_00718at 772.631 kb on + strand, within CCNA_00718at 772.639 kb on - strand, within CCNA_00718at 772.646 kb on - strand, within CCNA_00718at 772.646 kb on - strandat 772.690 kb on + strand, within CCNA_00718at 772.698 kb on - strandat 772.698 kb on - strandat 772.711 kb on - strandat 772.711 kb on - strandat 772.747 kb on + strandat 772.752 kb on + strandat 772.795 kb on - strandat 772.795 kb on - strandat 772.795 kb on - strandat 772.795 kb on - strandat 772.808 kb on - strand, within CCNA_03930at 772.812 kb on + strand, within CCNA_03930

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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770,768 + -1.5
770,789 + +1.4
770,794 + +3.0
770,833 + CCNA_03927 0.12 +0.0
770,833 + CCNA_03927 0.12 -0.9
770,993 - CCNA_03927 0.66 +0.0
771,000 - CCNA_03927 0.68 +1.4
771,024 - CCNA_03927 0.76 +1.4
771,031 - CCNA_03927 0.78 +1.2
771,033 + CCNA_03927 0.79 +2.0
771,041 - CCNA_03927 0.82 -0.8
771,109 + +0.4
771,109 + -0.6
771,114 + -0.8
771,133 + +0.4
771,133 + -0.2
771,135 + -0.3
771,135 + +1.0
771,143 - -1.4
771,176 + CCNA_03928 0.21 +3.0
771,181 + CCNA_03928 0.23 -0.8
771,184 - CCNA_03928 0.25 +1.3
771,189 - CCNA_03928 0.28 +0.0
771,194 + CCNA_03928 0.30 -2.0
771,213 - CCNA_03928 0.40 -0.5
771,213 - CCNA_03928 0.40 +0.5
771,213 - CCNA_03928 0.40 -0.3
771,232 - CCNA_03928 0.50 +1.4
771,232 - CCNA_03928 0.50 -1.6
771,232 - CCNA_03928 0.50 -0.6
771,232 - CCNA_03928 0.50 +0.4
771,239 + CCNA_03928 0.54 +0.7
771,259 + CCNA_03928 0.64 +1.7
771,260 + CCNA_03928 0.65 +0.7
771,260 + CCNA_03928 0.65 +0.7
771,273 - CCNA_03928 0.71 -0.5
771,277 - CCNA_03928 0.73 +0.3
771,277 - CCNA_03928 0.73 +0.2
771,277 - CCNA_03928 0.73 -0.4
771,306 + CCNA_03928 0.89 +0.3
771,316 + -0.5
771,336 + -0.2
771,344 - -0.9
771,344 - +1.3
771,373 + +0.7
771,378 + +1.0
771,378 + +0.7
771,381 - -0.5
771,381 - +0.5
771,386 - +0.5
771,396 - -0.5
771,397 - +1.4
771,406 - -0.5
771,406 - +0.3
771,427 + CCNA_00716 0.20 +0.2
771,428 + CCNA_00716 0.21 -0.5
771,431 - CCNA_00716 0.23 +0.1
771,448 - CCNA_00716 0.32 +0.7
771,449 + CCNA_00716 0.33 +3.5
771,449 + CCNA_00716 0.33 +3.5
771,457 - CCNA_00716 0.37 +2.0
771,457 - CCNA_00716 0.37 +0.7
771,475 + CCNA_00716 0.47 -1.4
771,475 + CCNA_00716 0.47 -0.5
771,540 - CCNA_00716 0.84 -0.7
771,560 - +1.2
771,564 + +1.0
771,653 + +0.6
771,653 + -0.2
771,653 + -1.6
771,653 + +0.8
771,661 - -0.0
771,682 + -0.6
771,683 + +1.0
771,696 - -0.7
771,696 - +2.0
771,719 + -1.1
771,719 + +1.0
771,719 + -0.0
771,727 - -0.8
771,727 - +0.4
771,727 - +2.0
771,727 - -0.5
771,732 - -0.1
771,773 - CCNA_03929 0.46 -1.1
771,806 + CCNA_03929 0.75 -1.3
771,810 - CCNA_03929 0.78 -1.6
771,840 - -0.3
771,852 + +0.5
771,869 - -0.7
771,875 + -0.5
771,886 + +1.0
771,893 - -1.1
771,893 - -0.7
771,901 - +0.7
771,913 + +0.7
771,921 - -2.1
771,940 - -0.2
771,962 - +1.4
771,962 - -0.0
771,963 - +1.4
771,976 + -0.2
771,984 - CCNA_00718 0.11 -0.5
771,984 - CCNA_00718 0.11 +0.1
771,984 - CCNA_00718 0.11 -0.1
772,005 + CCNA_00718 0.13 +3.0
772,005 + CCNA_00718 0.13 -1.7
772,005 + CCNA_00718 0.13 +0.4
772,005 + CCNA_00718 0.13 -1.4
772,005 + CCNA_00718 0.13 -0.7
772,005 + CCNA_00718 0.13 +2.0
772,007 + CCNA_00718 0.13 -0.0
772,013 - CCNA_00718 0.14 -0.0
772,013 - CCNA_00718 0.14 -1.5
772,013 - CCNA_00718 0.14 +0.3
772,013 - CCNA_00718 0.14 -0.6
772,013 - CCNA_00718 0.14 -2.1
772,013 - CCNA_00718 0.14 -2.9
772,013 - CCNA_00718 0.14 +0.4
772,013 - CCNA_00718 0.14 -0.1
772,020 - CCNA_00718 0.15 -0.5
772,066 + CCNA_00718 0.20 +0.7
772,100 + CCNA_00718 0.24 +0.4
772,107 - CCNA_00718 0.25 -1.3
772,115 + CCNA_00718 0.25 +1.4
772,130 + CCNA_00718 0.27 +0.4
772,130 + CCNA_00718 0.27 -0.2
772,130 + CCNA_00718 0.27 +0.2
772,130 + CCNA_00718 0.27 -0.2
772,169 - CCNA_00718 0.31 +1.1
772,212 + CCNA_00718 0.36 +1.4
772,218 - CCNA_00718 0.37 -0.6
772,218 - CCNA_00718 0.37 -0.6
772,218 - CCNA_00718 0.37 +0.4
772,229 + CCNA_00718 0.38 -0.0
772,285 + CCNA_00718 0.44 -1.3
772,341 - CCNA_00718 0.51 +0.5
772,355 - CCNA_00718 0.52 -0.2
772,355 - CCNA_00718 0.52 +1.1
772,356 + CCNA_00718 0.52 +1.0
772,358 + CCNA_00718 0.53 -1.1
772,366 + CCNA_00718 0.53 -0.8
772,389 - CCNA_00718 0.56 +1.4
772,389 - CCNA_00718 0.56 -0.5
772,389 - CCNA_00718 0.56 -0.3
772,390 - CCNA_00718 0.56 -1.5
772,432 - CCNA_00718 0.61 -0.7
772,432 - CCNA_00718 0.61 +0.4
772,432 - CCNA_00718 0.61 +0.2
772,447 + CCNA_00718 0.62 +0.2
772,447 + CCNA_00718 0.62 -0.3
772,455 - CCNA_00718 0.63 +1.4
772,468 + CCNA_00718 0.65 +2.0
772,468 + CCNA_00718 0.65 +1.0
772,468 + CCNA_00718 0.65 +0.4
772,468 + CCNA_00718 0.65 +1.4
772,468 + CCNA_00718 0.65 -1.3
772,468 + CCNA_00718 0.65 -0.5
772,468 + CCNA_00718 0.65 -0.6
772,471 - CCNA_00718 0.65 +1.2
772,476 - CCNA_00718 0.66 +1.0
772,476 - CCNA_00718 0.66 -0.5
772,476 - CCNA_00718 0.66 +1.4
772,476 - CCNA_00718 0.66 -0.9
772,476 - CCNA_00718 0.66 -0.4
772,476 - CCNA_00718 0.66 -0.9
772,476 - CCNA_00718 0.66 +1.0
772,476 - CCNA_00718 0.66 -0.8
772,565 + CCNA_00718 0.76 -1.2
772,631 + CCNA_00718 0.83 +2.0
772,639 - CCNA_00718 0.84 +0.1
772,646 - CCNA_00718 0.85 +3.0
772,646 - +2.0
772,690 + CCNA_00718 0.90 -0.9
772,698 - -0.6
772,698 - -0.2
772,711 - +0.3
772,711 - +0.1
772,747 + -1.8
772,752 + -1.3
772,795 - -1.7
772,795 - +1.3
772,795 - -0.7
772,795 - -0.2
772,808 - CCNA_03930 0.17 +0.4
772,812 + CCNA_03930 0.21 -0.5

Or see this region's nucleotide sequence