Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03844

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
4,009,601	-				+2.4
4,009,627	-				+1.4
4,009,686	+		CCNA_03843	0.14	-1.5
4,009,735	+		CCNA_03843	0.22	+0.0
4,009,738	-		CCNA_03843	0.22	-1.8
4,009,740	+		CCNA_03843	0.23	-0.4
4,009,743	-		CCNA_03843	0.23	-0.5
4,009,770	+		CCNA_03843	0.28	-0.2
4,009,778	-		CCNA_03843	0.29	-0.2
4,009,784	-		CCNA_03843	0.30	-1.5
4,009,819	-		CCNA_03843	0.36	+0.8
4,009,829	+		CCNA_03843	0.37	-0.5
4,009,836	+		CCNA_03843	0.38	-1.1
4,009,836	+		CCNA_03843	0.38	-1.5
4,009,836	+		CCNA_03843	0.38	+1.4
4,009,836	+		CCNA_03843	0.38	-1.8
4,009,844	-		CCNA_03843	0.40	+2.4
4,009,854	-		CCNA_03843	0.41	+1.8
4,009,863	-		CCNA_03843	0.43	-0.5
4,009,878	+		CCNA_03843	0.45	-0.8
4,009,886	-		CCNA_03843	0.47	-1.0
4,009,910	-		CCNA_03843	0.51	+0.4
4,009,921	-		CCNA_03843	0.53	+2.4
4,009,956	-		CCNA_03843	0.58	-1.3
4,010,012	+		CCNA_03843	0.68	+0.5
4,010,113	+		CCNA_03843	0.84	+1.8
4,010,113	-		CCNA_03843	0.84	+0.8
4,010,128	-		CCNA_03843	0.87	+0.8
4,010,168	+				-1.2
4,010,271	+				+2.4
4,010,271	+				-0.6
4,010,306	-				-0.5
4,010,335	-				+0.8
4,010,335	-				-0.8
4,010,353	-		CCNA_03844	0.11	+2.4
4,010,361	+		CCNA_03844	0.12	-1.0
4,010,419	+		CCNA_03844	0.16	+0.7
4,010,453	+		CCNA_03844	0.19	+0.3
4,010,453	-		CCNA_03844	0.19	-0.5
4,010,512	-		CCNA_03844	0.24	-0.2
4,010,512	-		CCNA_03844	0.24	-0.8
4,010,565	+		CCNA_03844	0.28	-0.8
4,010,573	-		CCNA_03844	0.28	+0.4
4,010,580	-		CCNA_03844	0.29	-0.2
4,010,592	-		CCNA_03844	0.30	+0.0
4,010,597	+		CCNA_03844	0.30	+1.4
4,010,605	-		CCNA_03844	0.31	-1.0
4,010,615	+		CCNA_03844	0.32	-0.1
4,010,623	-		CCNA_03844	0.32	+0.0
4,010,633	+		CCNA_03844	0.33	+3.4
4,010,693	-		CCNA_03844	0.38	+1.4
4,010,728	-		CCNA_03844	0.40	-0.2
4,010,729	+		CCNA_03844	0.40	-0.2
4,010,729	+		CCNA_03844	0.40	-0.9
4,010,729	+		CCNA_03844	0.40	+0.5
4,010,739	+		CCNA_03844	0.41	-1.7
4,010,760	-		CCNA_03844	0.43	+1.4
4,010,761	-		CCNA_03844	0.43	-1.3
4,010,831	+		CCNA_03844	0.48	-0.6
4,010,836	+		CCNA_03844	0.49	+0.4
4,010,863	-		CCNA_03844	0.51	+0.8
4,010,913	+		CCNA_03844	0.55	+0.0
4,011,000	+		CCNA_03844	0.61	-2.0
4,011,007	-		CCNA_03844	0.62	-0.5
4,011,032	-		CCNA_03844	0.64	-1.8
4,011,054	+		CCNA_03844	0.66	+2.0
4,011,054	+		CCNA_03844	0.66	-0.6
4,011,054	+		CCNA_03844	0.66	+0.0
4,011,054	+		CCNA_03844	0.66	+0.0
4,011,054	+		CCNA_03844	0.66	+0.3
4,011,062	-		CCNA_03844	0.66	-1.6
4,011,062	-		CCNA_03844	0.66	+1.4
4,011,062	-		CCNA_03844	0.66	-1.2
4,011,062	-		CCNA_03844	0.66	+1.4
4,011,062	-		CCNA_03844	0.66	-0.2
4,011,062	-		CCNA_03844	0.66	-0.9
4,011,067	-		CCNA_03844	0.67	-1.3
4,011,073	-		CCNA_03844	0.67	-0.5
4,011,110	+		CCNA_03844	0.70	-1.5
4,011,110	-		CCNA_03844	0.70	-0.5
4,011,130	-		CCNA_03844	0.71	-1.5
4,011,157	+		CCNA_03844	0.74	+0.7
4,011,157	+		CCNA_03844	0.74	-1.3
4,011,157	+		CCNA_03844	0.74	+0.7
4,011,157	+		CCNA_03844	0.74	-0.4
4,011,157	+		CCNA_03844	0.74	+0.2
4,011,159	+		CCNA_03844	0.74	+0.8
4,011,165	-		CCNA_03844	0.74	-2.0
4,011,165	-		CCNA_03844	0.74	-0.8
4,011,206	-		CCNA_03844	0.77	+0.4
4,011,206	-		CCNA_03844	0.77	+0.0
4,011,264	+		CCNA_03844	0.82	+0.2
4,011,264	+		CCNA_03844	0.82	-0.3
4,011,294	+		CCNA_03844	0.84	+0.0
4,011,297	-		CCNA_03844	0.84	+0.4
4,011,318	-		CCNA_03844	0.86	+0.4
4,011,325	+		CCNA_03844	0.87	-1.7
4,011,333	-		CCNA_03844	0.87	-0.8
4,011,338	+		CCNA_03844	0.88	-0.2
4,011,437	+				+1.4
4,011,439	+				+2.6
4,011,439	-				+0.4
4,011,445	-				+0.0
4,011,470	+				+3.6
4,011,478	-				+1.4
4,011,517	+				+1.6
4,011,517	+				+2.0
4,011,517	+				+1.9
4,011,519	-				+0.4
4,011,522	+				+3.2
4,011,524	+				+2.0
4,011,525	-				-1.5
4,011,535	+				+0.5
4,011,575	-				-2.1
4,011,591	+				+0.0
4,011,631	-				-2.0
4,011,658	-				-1.2
4,011,783	+		CCNA_03845	0.18	+0.9
4,011,783	+		CCNA_03845	0.18	-0.2
4,011,783	+		CCNA_03845	0.18	+0.8
4,011,783	+		CCNA_03845	0.18	+1.0
4,011,783	+		CCNA_03845	0.18	+0.7
4,011,783	+		CCNA_03845	0.18	+0.8
4,011,783	-		CCNA_03845	0.18	-0.4
4,011,791	-		CCNA_03845	0.19	+1.6
4,011,791	-		CCNA_03845	0.19	+0.3
4,011,791	-		CCNA_03845	0.19	+0.6
4,011,814	+		CCNA_03845	0.21	-0.5
4,011,822	-		CCNA_03845	0.22	-0.8
4,011,822	-		CCNA_03845	0.22	+0.8
4,011,837	+		CCNA_03845	0.24	+0.7
4,011,926	+		CCNA_03845	0.34	+3.9
4,011,936	+		CCNA_03845	0.35	+2.8
4,011,936	+		CCNA_03845	0.35	+2.0
4,011,944	-				+0.4
4,011,944	-		CCNA_03845	0.36	+0.0
4,011,955	+		CCNA_03845	0.37	+1.0
4,011,965	+		CCNA_03845	0.38	-0.2
4,012,034	+		CCNA_03845	0.46	-0.5
4,012,042	-		CCNA_03845	0.46	+1.8
4,012,049	+		CCNA_03845	0.47	-0.2
4,012,101	+		CCNA_03845	0.53	-0.1
4,012,108	-		CCNA_03845	0.54	-0.6
4,012,108	-		CCNA_03845	0.54	+0.8
4,012,125	-				+1.4
4,012,141	+		CCNA_03845	0.57	+1.9
4,012,141	+		CCNA_03845	0.57	+0.4
4,012,146	-		CCNA_03845	0.58	+1.2
4,012,149	-		CCNA_03845	0.58	+1.8
4,012,174	+		CCNA_03845	0.61	-0.6
4,012,183	-		CCNA_03845	0.62	+0.6
4,012,208	+		CCNA_03845	0.65	-1.2
4,012,215	+		CCNA_03845	0.66	-0.9
4,012,248	-		CCNA_03845	0.69	-1.1
4,012,248	-		CCNA_03845	0.69	-0.2
4,012,367	+		CCNA_03845	0.82	-0.6
4,012,367	+		CCNA_03845	0.82	+0.4
4,012,367	+		CCNA_03845	0.82	-0.3
4,012,367	+		CCNA_03845	0.82	-0.5
4,012,370	-		CCNA_03845	0.83	-1.1
4,012,375	-		CCNA_03845	0.83	-1.3
4,012,375	-		CCNA_03845	0.83	-0.2
4,012,476	+				-1.5
4,012,476	+				-0.6
4,012,484	-				-1.0