Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03841

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
4,006,875	-				+3.9
4,006,894	-		CCNA_03840	0.42	-0.8
4,006,933	-		CCNA_03840	0.44	-1.2
4,006,956	-		CCNA_03840	0.46	-1.0
4,007,059	-		CCNA_03840	0.52	-0.3
4,007,084	+		CCNA_03840	0.54	+1.8
4,007,098	+		CCNA_03840	0.55	-0.2
4,007,106	-		CCNA_03840	0.55	-1.2
4,007,106	-		CCNA_03840	0.55	-1.2
4,007,110	+		CCNA_03840	0.56	+0.8
4,007,124	-		CCNA_03840	0.57	-0.8
4,007,185	-		CCNA_03840	0.60	-3.0
4,007,262	-		CCNA_03840	0.65	-3.2
4,007,290	+		CCNA_03840	0.67	+2.4
4,007,298	-		CCNA_03840	0.68	+0.4
4,007,361	+		CCNA_03840	0.72	-2.0
4,007,364	-		CCNA_03840	0.72	+0.8
4,007,366	+		CCNA_03840	0.72	-0.1
4,007,366	+		CCNA_03840	0.72	-2.0
4,007,369	-		CCNA_03840	0.72	-2.4
4,007,369	-		CCNA_03840	0.72	-1.1
4,007,371	+		CCNA_03840	0.72	-1.9
4,007,374	-		CCNA_03840	0.73	+0.0
4,007,379	-		CCNA_03840	0.73	+0.7
4,007,383	+		CCNA_03840	0.73	-1.1
4,007,515	+		CCNA_03840	0.82	+0.0
4,007,515	+		CCNA_03840	0.82	-0.9
4,007,515	+		CCNA_03840	0.82	-0.2
4,007,515	+		CCNA_03840	0.82	+0.4
4,007,517	-		CCNA_03840	0.82	-0.2
4,007,517	-				+1.4
4,007,520	+		CCNA_03840	0.82	-0.5
4,007,520	+		CCNA_03840	0.82	-0.5
4,007,527	+		CCNA_03840	0.83	-1.7
4,007,535	-		CCNA_03840	0.83	+0.5
4,007,545	-		CCNA_03840	0.84	+1.0
4,007,559	+		CCNA_03840	0.85	-0.8
4,007,568	-		CCNA_03840	0.85	-1.1
4,007,573	+		CCNA_03840	0.86	-1.0
4,007,581	-		CCNA_03840	0.86	-1.5
4,007,581	-		CCNA_03840	0.86	-0.1
4,007,581	-		CCNA_03840	0.86	+0.4
4,007,582	-		CCNA_03840	0.86	-2.5
4,007,583	+		CCNA_03840	0.86	+0.0
4,007,616	+		CCNA_03840	0.88	-0.2
4,007,616	+		CCNA_03840	0.88	+1.4
4,007,616	+		CCNA_03840	0.88	-1.1
4,007,624	-		CCNA_03840	0.89	-0.4
4,007,624	-		CCNA_03840	0.89	-0.9
4,007,624	-		CCNA_03840	0.89	-0.5
4,007,631	-		CCNA_03840	0.89	-0.9
4,007,640	+		CCNA_03840	0.90	-1.3
4,007,640	+		CCNA_03840	0.90	+0.0
4,007,643	-				+0.0
4,007,643	-				-1.3
4,007,643	-				+0.4
4,007,648	-				-1.7
4,007,648	-				-0.1
4,007,648	-				-0.2
4,007,681	+				-0.6
4,007,681	+				+0.4
4,007,681	+				+0.1
4,007,681	+				-2.0
4,007,681	+				-0.2
4,007,681	+				+0.0
4,007,681	+				-0.2
4,007,681	+				+0.5
4,007,689	-				+1.1
4,007,689	-				-0.2
4,007,722	+				-0.2
4,007,727	+				+2.4
4,007,730	-				+0.4
4,007,730	-				-0.5
4,007,731	-				-1.7
4,007,738	+				+2.4
4,007,747	-				-0.6
4,007,751	-				-1.0
4,007,768	-				-0.3
4,007,782	+				+1.4
4,007,803	+				+0.6
4,007,811	-				-1.2
4,007,811	-				-1.1
4,007,821	-				-0.2
4,007,830	-				-1.1
4,007,835	-				-1.5
4,007,857	-				-0.0
4,007,909	+				+0.4
4,007,912	-				-0.6
4,007,912	-				-1.7
4,007,930	+				+0.8
4,007,943	-		CCNA_03841	0.10	-0.1
4,007,950	-		CCNA_03841	0.11	-0.5
4,007,960	+		CCNA_03841	0.12	-2.2
4,007,967	-		CCNA_03841	0.12	-1.9
4,008,000	+		CCNA_03841	0.16	-1.0
4,008,019	+		CCNA_03841	0.18	-1.6
4,008,024	+		CCNA_03841	0.18	-0.5
4,008,084	+		CCNA_03841	0.25	-1.0
4,008,084	+		CCNA_03841	0.25	+0.4
4,008,092	-		CCNA_03841	0.26	-0.1
4,008,098	+		CCNA_03841	0.26	+0.4
4,008,104	-		CCNA_03841	0.27	-1.3
4,008,131	+		CCNA_03841	0.30	-2.6
4,008,152	+		CCNA_03841	0.32	-0.5
4,008,160	-		CCNA_03841	0.33	+1.4
4,008,163	+		CCNA_03841	0.33	-1.3
4,008,168	+		CCNA_03841	0.33	-0.8
4,008,168	+		CCNA_03841	0.33	-0.8
4,008,173	+		CCNA_03841	0.34	+1.4
4,008,176	-		CCNA_03841	0.34	-0.5
4,008,176	-		CCNA_03841	0.34	-1.5
4,008,181	-		CCNA_03841	0.35	-1.7
4,008,190	-		CCNA_03841	0.36	-1.1
4,008,196	-		CCNA_03841	0.36	-2.3
4,008,197	-		CCNA_03841	0.36	-1.2
4,008,205	+		CCNA_03841	0.37	-0.6
4,008,228	+		CCNA_03841	0.40	-1.2
4,008,228	+		CCNA_03841	0.40	+0.4
4,008,228	+		CCNA_03841	0.40	-0.5
4,008,228	+		CCNA_03841	0.40	-1.3
4,008,228	+		CCNA_03841	0.40	-1.8
4,008,234	-		CCNA_03841	0.40	-0.2
4,008,234	-		CCNA_03841	0.40	-0.3
4,008,270	+		CCNA_03841	0.44	-0.6
4,008,277	+		CCNA_03841	0.45	-0.8
4,008,278	-				+0.4
4,008,278	-		CCNA_03841	0.45	+0.4
4,008,310	+		CCNA_03841	0.48	+1.4
4,008,315	+		CCNA_03841	0.49	-1.1
4,008,318	-		CCNA_03841	0.49	-0.3
4,008,320	+		CCNA_03841	0.49	-1.4
4,008,320	+		CCNA_03841	0.49	-0.6
4,008,327	+		CCNA_03841	0.50	-0.6
4,008,327	-		CCNA_03841	0.50	-1.6
4,008,328	-		CCNA_03841	0.50	-1.1
4,008,328	-		CCNA_03841	0.50	+0.0
4,008,335	-		CCNA_03841	0.51	-0.3
4,008,360	+		CCNA_03841	0.53	+0.8
4,008,360	+		CCNA_03841	0.53	-1.6
4,008,360	+		CCNA_03841	0.53	+0.0
4,008,361	+		CCNA_03841	0.54	-1.0
4,008,361	+		CCNA_03841	0.54	+0.0
4,008,361	+		CCNA_03841	0.54	+0.0
4,008,361	+		CCNA_03841	0.54	+1.4
4,008,361	+		CCNA_03841	0.54	+0.4
4,008,368	-		CCNA_03841	0.54	-1.7
4,008,368	-		CCNA_03841	0.54	-2.1
4,008,368	-		CCNA_03841	0.54	-0.0
4,008,368	-		CCNA_03841	0.54	-0.8
4,008,369	-		CCNA_03841	0.54	+0.4
4,008,369	-		CCNA_03841	0.54	+2.8
4,008,369	-		CCNA_03841	0.54	-0.3
4,008,374	-		CCNA_03841	0.55	-1.3
4,008,393	+		CCNA_03841	0.57	-2.7
4,008,398	+		CCNA_03841	0.57	+0.6
4,008,398	+		CCNA_03841	0.57	-0.4
4,008,406	-		CCNA_03841	0.58	-0.5
4,008,406	-		CCNA_03841	0.58	+1.8
4,008,406	-		CCNA_03841	0.58	-1.8
4,008,406	-		CCNA_03841	0.58	+0.8
4,008,408	+		CCNA_03841	0.58	-0.5
4,008,408	+		CCNA_03841	0.58	+0.8
4,008,408	+		CCNA_03841	0.58	+0.4
4,008,416	-		CCNA_03841	0.59	+1.8
4,008,416	-		CCNA_03841	0.59	+2.0
4,008,416	-		CCNA_03841	0.59	-0.2
4,008,421	-		CCNA_03841	0.60	+0.4
4,008,433	+		CCNA_03841	0.61	-2.3
4,008,453	+		CCNA_03841	0.63	-1.0
4,008,453	+		CCNA_03841	0.63	-0.1
4,008,453	+		CCNA_03841	0.63	-0.8
4,008,476	+		CCNA_03841	0.66	+0.0
4,008,486	-		CCNA_03841	0.67	-1.2
4,008,507	-		CCNA_03841	0.69	+0.9
4,008,532	+		CCNA_03841	0.71	+0.4
4,008,532	+		CCNA_03841	0.71	+0.4
4,008,532	+		CCNA_03841	0.71	-0.8
4,008,532	+		CCNA_03841	0.71	-1.2
4,008,532	+		CCNA_03841	0.71	+0.5
4,008,532	+		CCNA_03841	0.71	-0.6
4,008,540	-		CCNA_03841	0.72	+1.4
4,008,540	-		CCNA_03841	0.72	-1.6
4,008,540	-		CCNA_03841	0.72	+0.0
4,008,540	-		CCNA_03841	0.72	-0.8
4,008,540	-		CCNA_03841	0.72	-1.3
4,008,540	-		CCNA_03841	0.72	-1.0
4,008,540	-		CCNA_03841	0.72	-1.0
4,008,540	-		CCNA_03841	0.72	-0.6
4,008,540	-		CCNA_03841	0.72	+0.4
4,008,540	-		CCNA_03841	0.72	+0.0
4,008,540	-		CCNA_03841	0.72	-0.8
4,008,540	-		CCNA_03841	0.72	-0.0
4,008,550	+		CCNA_03841	0.73	-0.8
4,008,550	+		CCNA_03841	0.73	-1.9
4,008,558	-				+2.4
4,008,558	-		CCNA_03841	0.74	+0.0
4,008,558	-		CCNA_03841	0.74	+0.8
4,008,558	-		CCNA_03841	0.74	-1.6
4,008,559	+		CCNA_03841	0.74	-2.0
4,008,572	-		CCNA_03841	0.76	-1.2
4,008,572	-		CCNA_03841	0.76	-1.7
4,008,593	-		CCNA_03841	0.78	-0.6
4,008,593	-		CCNA_03841	0.78	-1.1
4,008,620	+		CCNA_03841	0.81	-1.0
4,008,620	+		CCNA_03841	0.81	+0.4
4,008,620	+		CCNA_03841	0.81	+2.4
4,008,626	+		CCNA_03841	0.81	-1.2
4,008,626	+		CCNA_03841	0.81	+1.4
4,008,628	-		CCNA_03841	0.81	-0.5
4,008,628	-		CCNA_03841	0.81	-1.7
4,008,628	-		CCNA_03841	0.81	-2.7
4,008,628	-		CCNA_03841	0.81	-1.6
4,008,628	-		CCNA_03841	0.81	-1.5
4,008,628	-		CCNA_03841	0.81	-1.5
4,008,628	-		CCNA_03841	0.81	-0.2
4,008,649	+		CCNA_03841	0.84	+0.4
4,008,649	-		CCNA_03841	0.84	-2.1
4,008,692	-		CCNA_03841	0.88	-2.1
4,008,716	+				-1.5
4,008,719	-				+0.4
4,008,724	-				+1.4
4,008,724	-				+1.0
4,008,724	-				+1.6
4,008,745	+				+1.4
4,008,757	+				-1.8
4,008,762	+				+0.4
4,008,765	-				-0.4
4,008,776	-				+0.0
4,008,781	+				+0.8
4,008,852	-				-1.1
4,008,868	+				+0.8
4,008,868	+				+0.8
4,009,601	-				+2.4
4,009,627	-				+1.4
4,009,686	+		CCNA_03843	0.14	-1.5
4,009,735	+		CCNA_03843	0.22	+0.0
4,009,738	-		CCNA_03843	0.22	-1.8
4,009,740	+		CCNA_03843	0.23	-0.4
4,009,743	-		CCNA_03843	0.23	-0.5
4,009,770	+		CCNA_03843	0.28	-0.2
4,009,778	-		CCNA_03843	0.29	-0.2
4,009,784	-		CCNA_03843	0.30	-1.5