Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03786

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,952,405	-				+0.6
3,952,412	-				+0.1
3,952,429	+				+0.0
3,952,436	+				+0.8
3,952,496	+				-1.1
3,952,504	-				+0.0
3,952,594	-				-1.6
3,952,616	+				-1.3
3,952,620	+				-0.1
3,952,630	+				+0.9
3,952,630	+				-0.6
3,952,630	+				-0.1
3,952,630	+				-0.5
3,952,631	-				-1.6
3,952,669	+				-0.1
3,952,717	+		CCNA_03997	0.12	-0.8
3,952,725	-		CCNA_03997	0.13	-0.1
3,952,725	-		CCNA_03997	0.13	-1.5
3,952,725	-		CCNA_03997	0.13	-1.5
3,952,797	+		CCNA_03997	0.24	+0.2
3,952,807	+		CCNA_03997	0.25	-0.4
3,952,815	-		CCNA_03997	0.26	-0.5
3,952,840	+		CCNA_03997	0.30	+3.3
3,952,887	+		CCNA_03997	0.37	-3.0
3,952,887	+		CCNA_03997	0.37	+1.4
3,952,895	-		CCNA_03997	0.38	-1.5
3,952,907	+		CCNA_03997	0.40	+0.3
3,952,915	-		CCNA_03997	0.41	-1.0
3,952,927	+		CCNA_03997	0.43	-1.6
3,952,930	-		CCNA_03997	0.44	+0.8
3,952,930	-		CCNA_03997	0.44	-1.0
3,952,930	-		CCNA_03997	0.44	+0.0
3,952,944	+		CCNA_03997	0.46	-0.8
3,952,977	-		CCNA_03997	0.51	+1.6
3,952,980	+		CCNA_03997	0.51	+0.4
3,952,980	+		CCNA_03997	0.51	+1.0
3,952,980	+		CCNA_03997	0.51	-1.6
3,952,988	-		CCNA_03997	0.52	+2.1
3,952,989	-		CCNA_03997	0.53	+1.3
3,952,989	-		CCNA_03997	0.53	+0.4
3,953,045	-		CCNA_03997	0.61	-2.0
3,953,061	+		CCNA_03997	0.63	+0.2
3,953,061	+		CCNA_03997	0.63	+0.2
3,953,069	-		CCNA_03997	0.65	+0.0
3,953,104	+		CCNA_03997	0.70	+0.9
3,953,133	+		CCNA_03997	0.74	+1.3
3,953,139	-		CCNA_03997	0.75	+0.4
3,953,142	+		CCNA_03997	0.76	+0.5
3,953,148	+		CCNA_03997	0.77	+1.8
3,953,156	-				+0.8
3,953,158	+		CCNA_03997	0.78	+0.7
3,953,158	+		CCNA_03997	0.78	+1.5
3,953,166	-		CCNA_03997	0.79	-0.6
3,953,166	-		CCNA_03997	0.79	+0.8
3,953,179	+		CCNA_03997	0.81	+0.6
3,953,187	-		CCNA_03997	0.83	-1.3
3,953,187	-		CCNA_03997	0.83	-2.0
3,953,189	-		CCNA_03997	0.83	-0.7
3,953,254	+				+0.7
3,953,262	-				-1.0
3,953,262	-				-1.3
3,953,262	-				-1.6
3,953,262	-				-1.4
3,953,262	-				-1.2
3,953,268	+				+1.2
3,953,275	+				+0.7
3,953,277	-				-0.8
3,953,287	+				+0.6
3,953,296	+				+1.3
3,953,296	+				+1.6
3,953,328	+				-1.3
3,953,330	+				+1.6
3,953,342	+				-0.6
3,953,351	+				-2.6
3,953,395	-				+0.4
3,953,447	+				-0.6
3,953,447	+				-0.5
3,953,527	+		CCNA_03786	0.17	-1.3
3,953,555	+		CCNA_03786	0.20	-1.9
3,953,555	+		CCNA_03786	0.20	+0.1
3,953,555	+		CCNA_03786	0.20	-2.1
3,953,565	-		CCNA_03786	0.22	+1.4
3,953,581	+		CCNA_03786	0.24	-1.6
3,953,585	+		CCNA_03786	0.24	-0.6
3,953,585	+		CCNA_03786	0.24	-0.2
3,953,695	-		CCNA_03786	0.39	+0.4
3,953,695	-		CCNA_03786	0.39	+1.4
3,953,704	+		CCNA_03786	0.40	-1.6
3,953,708	+		CCNA_03786	0.41	-1.6
3,953,708	+		CCNA_03786	0.41	+0.0
3,953,709	+		CCNA_03786	0.41	-2.1
3,953,713	+		CCNA_03786	0.42	-0.3
3,953,713	+		CCNA_03786	0.42	-2.6
3,953,713	+		CCNA_03786	0.42	+1.8
3,953,716	-		CCNA_03786	0.42	-1.0
3,953,724	+		CCNA_03786	0.43	-1.6
3,953,787	+		CCNA_03786	0.52	-0.2
3,953,830	+		CCNA_03786	0.57	-1.5
3,953,905	-		CCNA_03786	0.67	-0.5
3,953,927	+		CCNA_03786	0.70	+0.8
3,953,941	+		CCNA_03786	0.72	-0.8
3,953,950	+		CCNA_03786	0.74	-0.0
3,953,950	+		CCNA_03786	0.74	-1.8
3,953,950	-		CCNA_03786	0.74	+0.8
3,953,955	+		CCNA_03786	0.74	-2.0
3,953,958	-		CCNA_03786	0.75	+2.4
3,953,958	-		CCNA_03786	0.75	+0.8
3,953,963	-		CCNA_03786	0.75	+2.4
3,954,006	+		CCNA_03786	0.81	-0.2
3,954,006	+		CCNA_03786	0.81	-0.6
3,954,006	+		CCNA_03786	0.81	-1.6
3,954,014	-		CCNA_03786	0.82	+0.8
3,954,014	-		CCNA_03786	0.82	+0.4
3,954,033	+		CCNA_03786	0.85	+1.8
3,954,033	+		CCNA_03786	0.85	-0.8
3,954,038	+		CCNA_03786	0.85	-1.0
3,954,072	+				-1.0
3,954,172	-		CCNA_03787	0.17	+0.4
3,954,174	-		CCNA_03787	0.18	+3.9
3,954,244	-		CCNA_03787	0.60	+0.4
3,954,268	+		CCNA_03787	0.74	+1.7
3,954,329	-				+0.5
3,954,331	-				-0.5
3,954,402	+		CCNA_03788	0.19	-0.6
3,954,402	+		CCNA_03788	0.19	+0.0
3,954,404	+		CCNA_03788	0.19	-0.1
3,954,428	+		CCNA_03788	0.24	-1.9
3,954,477	+		CCNA_03788	0.33	-0.5
3,954,494	+		CCNA_03788	0.36	-1.0
3,954,572	-		CCNA_03788	0.52	+2.4
3,954,578	-		CCNA_03788	0.53	+0.8
3,954,596	-		CCNA_03788	0.56	+0.8
3,954,598	+		CCNA_03788	0.57	-0.2
3,954,611	+		CCNA_03788	0.59	+0.0
3,954,631	+		CCNA_03788	0.63	+0.4
3,954,673	+		CCNA_03788	0.71	-0.7
3,954,691	+		CCNA_03788	0.75	+1.4
3,954,691	+		CCNA_03788	0.75	-0.2
3,954,691	+		CCNA_03788	0.75	-0.6
3,954,691	+		CCNA_03788	0.75	+0.4
3,954,691	+		CCNA_03788	0.75	-1.1
3,954,691	+		CCNA_03788	0.75	-2.9
3,954,691	+		CCNA_03788	0.75	-1.3
3,954,691	+		CCNA_03788	0.75	+1.1
3,954,691	+		CCNA_03788	0.75	-0.6
3,954,691	+		CCNA_03788	0.75	-0.5
3,954,723	+		CCNA_03788	0.81	-0.8
3,954,835	+				+1.6
3,954,835	+				+1.8
3,954,835	+				+1.6
3,954,835	+				+1.3
3,954,835	+				+0.2
3,954,843	-				+0.7
3,954,843	-				+0.0
3,954,843	-				-0.8
3,954,843	-				-0.7
3,954,843	-				+1.4
3,954,904	+				+2.4
3,954,911	+		CCNA_03789	0.23	-0.0
3,954,959	-		CCNA_03789	0.35	+0.8
3,954,962	+		CCNA_03789	0.36	-0.3
3,955,010	+		CCNA_03789	0.49	-0.2
3,955,018	-		CCNA_03789	0.51	-1.9
3,955,018	-		CCNA_03789	0.51	-2.0
3,955,033	+		CCNA_03789	0.55	+1.4
3,955,041	-		CCNA_03789	0.57	-0.7
3,955,041	-		CCNA_03789	0.57	-0.8
3,955,066	+		CCNA_03789	0.63	+0.6
3,955,066	+		CCNA_03789	0.63	+0.2
3,955,092	+		CCNA_03789	0.70	-0.6
3,955,092	+		CCNA_03789	0.70	+0.0
3,955,100	-		CCNA_03789	0.72	-0.8
3,955,110	+		CCNA_03789	0.75	-0.6