Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03772

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,939,027	+				-0.5
3,939,037	+				+2.4
3,939,045	-				-1.9
3,939,079	+				-0.4
3,939,079	+				+1.4
3,939,082	+				+2.4
3,939,084	+				-2.3
3,939,084	+				+0.2
3,939,088	-		CCNA_03771	0.10	-0.5
3,939,137	-		CCNA_03771	0.15	+1.4
3,939,153	+		CCNA_03771	0.16	-0.8
3,939,155	-		CCNA_03771	0.17	-1.5
3,939,191	-		CCNA_03771	0.20	-1.2
3,939,218	+		CCNA_03771	0.23	+0.0
3,939,221	-		CCNA_03771	0.23	-0.5
3,939,221	-		CCNA_03771	0.23	-1.4
3,939,241	+		CCNA_03771	0.25	+0.8
3,939,241	+		CCNA_03771	0.25	-1.0
3,939,241	+		CCNA_03771	0.25	-0.2
3,939,249	-		CCNA_03771	0.26	-1.2
3,939,272	+		CCNA_03771	0.28	-1.9
3,939,281	+		CCNA_03771	0.29	-0.1
3,939,300	+		CCNA_03771	0.30	+1.4
3,939,308	-		CCNA_03771	0.31	+0.8
3,939,310	+		CCNA_03771	0.31	-0.8
3,939,323	-		CCNA_03771	0.33	-2.0
3,939,334	+		CCNA_03771	0.34	-0.1
3,939,340	+		CCNA_03771	0.34	+0.7
3,939,350	+		CCNA_03771	0.35	+0.4
3,939,369	+		CCNA_03771	0.37	-0.2
3,939,369	+		CCNA_03771	0.37	-1.3
3,939,369	+		CCNA_03771	0.37	-0.3
3,939,369	+		CCNA_03771	0.37	+1.8
3,939,369	+		CCNA_03771	0.37	-0.4
3,939,369	+		CCNA_03771	0.37	-0.0
3,939,377	-		CCNA_03771	0.38	+0.0
3,939,377	-		CCNA_03771	0.38	-0.5
3,939,377	-		CCNA_03771	0.38	-1.6
3,939,377	-		CCNA_03771	0.38	+1.8
3,939,377	-		CCNA_03771	0.38	+0.4
3,939,377	-		CCNA_03771	0.38	+0.4
3,939,392	+		CCNA_03771	0.39	-2.0
3,939,392	+		CCNA_03771	0.39	-1.1
3,939,400	-		CCNA_03771	0.40	+0.4
3,939,400	-		CCNA_03771	0.40	-2.4
3,939,400	-		CCNA_03771	0.40	-0.6
3,939,400	-		CCNA_03771	0.40	-2.8
3,939,411	+		CCNA_03771	0.41	+0.0
3,939,419	-		CCNA_03771	0.42	-0.5
3,939,440	+		CCNA_03771	0.44	+0.1
3,939,469	-		CCNA_03771	0.47	+0.0
3,939,484	+		CCNA_03771	0.48	+0.0
3,939,503	-		CCNA_03771	0.50	+1.0
3,939,563	+		CCNA_03771	0.56	-0.5
3,939,563	+		CCNA_03771	0.56	-0.6
3,939,563	+		CCNA_03771	0.56	-0.6
3,939,569	-		CCNA_03771	0.56	+1.4
3,939,650	+		CCNA_03771	0.64	-0.6
3,939,672	+		CCNA_03771	0.66	-2.7
3,939,672	+		CCNA_03771	0.66	-0.6
3,939,675	-		CCNA_03771	0.66	-2.4
3,939,680	-		CCNA_03771	0.67	+0.0
3,939,680	-		CCNA_03771	0.67	-1.1
3,939,691	+		CCNA_03771	0.68	-1.5
3,939,693	+		CCNA_03771	0.68	+0.9
3,939,693	+		CCNA_03771	0.68	-0.2
3,939,713	+		CCNA_03771	0.70	+0.2
3,939,713	+		CCNA_03771	0.70	+0.4
3,939,721	-				+0.8
3,939,721	-		CCNA_03771	0.71	-2.3
3,939,721	-		CCNA_03771	0.71	+0.4
3,939,723	+		CCNA_03771	0.71	+1.1
3,939,739	-		CCNA_03771	0.72	-0.6
3,939,739	-		CCNA_03771	0.72	-0.6
3,939,745	+		CCNA_03771	0.73	-1.0
3,939,747	-		CCNA_03771	0.73	+0.0
3,939,754	-		CCNA_03771	0.74	-0.8
3,939,760	+		CCNA_03771	0.74	+1.2
3,939,760	+		CCNA_03771	0.74	+1.0
3,939,770	+				+3.4
3,939,777	+		CCNA_03771	0.76	+0.1
3,939,778	-		CCNA_03771	0.76	-1.0
3,939,780	-		CCNA_03771	0.76	-2.3
3,939,782	+		CCNA_03771	0.77	-0.5
3,939,790	-		CCNA_03771	0.77	-2.6
3,939,826	-		CCNA_03771	0.81	-2.0
3,939,831	-		CCNA_03771	0.81	-1.0
3,939,842	+		CCNA_03771	0.82	-1.0
3,939,842	+		CCNA_03771	0.82	-0.2
3,939,842	+		CCNA_03771	0.82	+0.4
3,939,842	+		CCNA_03771	0.82	-1.7
3,939,850	-		CCNA_03771	0.83	-0.6
3,939,850	-		CCNA_03771	0.83	-0.5
3,939,860	+		CCNA_03771	0.84	+1.0
3,939,860	+		CCNA_03771	0.84	-0.1
3,939,860	+		CCNA_03771	0.84	-0.4
3,939,860	+		CCNA_03771	0.84	-0.0
3,939,865	+		CCNA_03771	0.84	-0.5
3,939,865	+		CCNA_03771	0.84	+2.2
3,939,893	+		CCNA_03771	0.87	-1.6
3,939,894	-		CCNA_03771	0.87	-1.0
3,939,955	+				-3.4
3,940,010	+				+1.6
3,940,018	-				+0.8
3,940,028	+				-0.4
3,940,042	-				-0.8
3,940,049	+				+2.8
3,940,068	+		CCNA_03772	0.11	-0.2
3,940,117	+		CCNA_03772	0.23	-1.8
3,940,117	+		CCNA_03772	0.23	+0.4
3,940,125	-		CCNA_03772	0.25	+0.2
3,940,125	-		CCNA_03772	0.25	+0.4
3,940,133	+		CCNA_03772	0.27	-0.5
3,940,152	-		CCNA_03772	0.31	+0.2
3,940,182	-		CCNA_03772	0.38	+0.5
3,940,185	-		CCNA_03772	0.39	-0.1
3,940,236	+		CCNA_03772	0.51	-0.3
3,940,244	-		CCNA_03772	0.53	-0.5
3,940,289	-		CCNA_03772	0.63	-0.5
3,940,294	-		CCNA_03772	0.64	-1.3
3,940,297	+		CCNA_03772	0.65	+2.4
3,940,312	+		CCNA_03772	0.69	-0.1
3,940,317	+		CCNA_03772	0.70	+0.5
3,940,349	+		CCNA_03772	0.77	+0.6
3,940,349	+		CCNA_03772	0.77	-1.7
3,940,359	+		CCNA_03772	0.80	+0.3
3,940,359	+		CCNA_03772	0.80	-0.1
3,940,367	-		CCNA_03772	0.81	-1.0
3,940,367	-		CCNA_03772	0.81	-0.1
3,940,373	-		CCNA_03772	0.83	+1.1
3,940,380	-		CCNA_03772	0.85	-0.5
3,940,380	-		CCNA_03772	0.85	+1.2
3,940,382	+		CCNA_03772	0.85	-1.0
3,940,382	+		CCNA_03772	0.85	-0.2
3,940,382	+		CCNA_03772	0.85	-0.8
3,940,382	+		CCNA_03772	0.85	+1.2
3,940,382	+		CCNA_03772	0.85	-0.9
3,940,385	-		CCNA_03772	0.86	-0.1
3,940,385	-		CCNA_03772	0.86	+0.6
3,940,390	-		CCNA_03772	0.87	-2.2
3,940,390	-		CCNA_03772	0.87	-1.0
3,940,390	-		CCNA_03772	0.87	+1.2
3,940,390	-		CCNA_03772	0.87	-0.0
3,940,448	-				-0.2
3,940,448	-				-0.4
3,940,455	+				-2.3
3,940,455	+				+1.8
3,940,485	-				-0.1
3,940,488	+				-2.0
3,940,489	+				-0.6
3,940,491	-				+1.6
3,940,496	-				+2.1
3,940,496	-				+1.0
3,940,513	+				-1.3
3,940,513	+				+0.5
3,940,521	-				+2.1
3,940,521	-				+0.2
3,940,521	-				-0.5
3,940,543	+				-2.1
3,940,585	+		CCNA_03773	0.11	+0.2
3,940,594	+		CCNA_03773	0.12	-0.7
3,940,594	+		CCNA_03773	0.12	-1.2
3,940,602	+		CCNA_03773	0.12	+2.0
3,940,602	-		CCNA_03773	0.12	-0.2
3,940,602	-		CCNA_03773	0.12	+0.2
3,940,674	+		CCNA_03773	0.18	+1.1
3,940,677	-		CCNA_03773	0.19	+0.4
3,940,687	+		CCNA_03773	0.19	+0.9
3,940,749	-		CCNA_03773	0.25	-1.5
3,940,770	-		CCNA_03773	0.27	+1.1
3,940,772	+		CCNA_03773	0.27	-1.6
3,940,772	+		CCNA_03773	0.27	-0.5
3,940,780	-		CCNA_03773	0.27	-0.3
3,940,780	-		CCNA_03773	0.27	-0.3
3,940,806	+		CCNA_03773	0.30	+0.7
3,940,889	+		CCNA_03773	0.37	-0.2
3,940,897	-		CCNA_03773	0.37	-0.5
3,940,938	-		CCNA_03773	0.41	+1.1
3,940,971	+		CCNA_03773	0.44	+1.5
3,940,978	+		CCNA_03773	0.44	+1.5
3,940,978	+		CCNA_03773	0.44	+1.4
3,940,978	+		CCNA_03773	0.44	-0.5
3,940,978	+		CCNA_03773	0.44	+2.4
3,940,978	+		CCNA_03773	0.44	+0.7
3,940,978	+		CCNA_03773	0.44	+0.8
3,940,980	+		CCNA_03773	0.44	-1.0
3,940,985	+		CCNA_03773	0.45	+1.2
3,940,986	-		CCNA_03773	0.45	-0.8
3,940,986	-		CCNA_03773	0.45	+1.4
3,940,986	-		CCNA_03773	0.45	+0.2
3,940,988	-		CCNA_03773	0.45	+0.9
3,940,988	-		CCNA_03773	0.45	+1.2
3,941,068	+		CCNA_03773	0.52	+2.5
3,941,068	+		CCNA_03773	0.52	+3.3
3,941,076	-		CCNA_03773	0.53	+0.4
3,941,076	-		CCNA_03773	0.53	+1.0
3,941,090	-		CCNA_03773	0.54	+2.1
3,941,090	-		CCNA_03773	0.54	+0.5
3,941,092	+		CCNA_03773	0.54	-0.3
3,941,100	-		CCNA_03773	0.55	-0.3
3,941,112	-		CCNA_03773	0.56	+2.4
3,941,113	-		CCNA_03773	0.56	-0.4
3,941,124	-		CCNA_03773	0.57	+0.8
3,941,228	-		CCNA_03773	0.65	-0.6
3,941,247	+		CCNA_03773	0.67	-1.6
3,941,247	+		CCNA_03773	0.67	+1.6
3,941,254	-		CCNA_03773	0.68	+1.0
3,941,254	-		CCNA_03773	0.68	+0.7
3,941,254	-		CCNA_03773	0.68	-1.0
3,941,293	+		CCNA_03773	0.71	+0.8
3,941,293	+		CCNA_03773	0.71	+1.0
3,941,301	-		CCNA_03773	0.72	+0.5
3,941,308	-		CCNA_03773	0.72	-0.1
3,941,310	+		CCNA_03773	0.72	-1.9
3,941,329	+		CCNA_03773	0.74	-0.8
3,941,365	+		CCNA_03773	0.77	-2.5
3,941,436	-		CCNA_03773	0.83	+1.1
3,941,436	-		CCNA_03773	0.83	+0.9