Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03740

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,908,607	+		CCNA_03738	0.67	-1.7
3,908,626	+		CCNA_03738	0.68	+1.3
3,908,692	+		CCNA_03738	0.72	-0.6
3,908,729	+		CCNA_03738	0.74	-0.8
3,908,737	-		CCNA_03738	0.74	+0.0
3,908,857	-		CCNA_03738	0.81	-1.2
3,908,878	-		CCNA_03738	0.82	+0.8
3,908,925	+		CCNA_03738	0.85	-1.3
3,908,933	-		CCNA_03738	0.85	+0.7
3,908,933	-		CCNA_03738	0.85	+0.8
3,908,952	+		CCNA_03738	0.86	-0.5
3,908,959	+		CCNA_03738	0.87	+2.9
3,909,046	+				+0.8
3,909,047	+				+1.0
3,909,105	-				+0.0
3,909,111	+				+1.0
3,909,116	+				-0.6
3,909,116	+				-1.2
3,909,116	-				+1.0
3,909,146	+				-0.5
3,909,172	-				-1.7
3,909,180	+				-2.2
3,909,192	+				-1.5
3,909,200	-		CCNA_03739	0.15	-1.7
3,909,214	-		CCNA_03739	0.18	-1.0
3,909,214	-		CCNA_03739	0.18	-1.2
3,909,230	-		CCNA_03739	0.22	+0.9
3,909,277	-		CCNA_03739	0.32	+0.8
3,909,279	+		CCNA_03739	0.32	-0.1
3,909,292	-		CCNA_03739	0.35	+0.0
3,909,303	+		CCNA_03739	0.38	-0.6
3,909,315	+		CCNA_03739	0.40	+1.4
3,909,315	+		CCNA_03739	0.40	-2.0
3,909,323	-		CCNA_03739	0.42	+1.1
3,909,323	-		CCNA_03739	0.42	-0.5
3,909,323	-		CCNA_03739	0.42	-1.1
3,909,323	-		CCNA_03739	0.42	-0.7
3,909,323	-		CCNA_03739	0.42	+2.4
3,909,342	+		CCNA_03739	0.46	-0.9
3,909,371	+		CCNA_03739	0.53	+0.7
3,909,371	+		CCNA_03739	0.53	-1.2
3,909,371	+		CCNA_03739	0.53	-3.0
3,909,379	-		CCNA_03739	0.54	+0.2
3,909,410	-		CCNA_03739	0.61	-0.3
3,909,453	+		CCNA_03739	0.71	-0.9
3,909,453	+		CCNA_03739	0.71	-0.3
3,909,459	-		CCNA_03739	0.72	-0.2
3,909,474	-		CCNA_03739	0.75	-0.1
3,909,479	+		CCNA_03739	0.76	+1.6
3,909,511	+		CCNA_03739	0.83	-0.1
3,909,511	+		CCNA_03739	0.83	-0.6
3,909,511	+		CCNA_03739	0.83	+0.8
3,909,519	-		CCNA_03739	0.85	+0.6
3,909,519	-		CCNA_03739	0.85	+0.3
3,909,519	-		CCNA_03739	0.85	+0.6
3,909,519	-		CCNA_03739	0.85	+1.9
3,909,569	+				+0.0
3,909,569	+				+2.4
3,909,572	-				+1.5
3,909,602	+				+1.4
3,909,610	-				+1.1
3,909,610	-				+1.6
3,909,610	-				+2.5
3,909,610	-				+2.2
3,909,612	-				+1.8
3,909,624	+				-1.3
3,909,643	+				-1.7
3,909,672	+				-1.3
3,909,688	-				-3.2
3,909,724	-		CCNA_03740	0.12	-0.2
3,909,735	-		CCNA_03740	0.13	-1.1
3,909,759	-		CCNA_03740	0.16	-2.1
3,909,798	+		CCNA_03740	0.20	+0.8
3,909,798	+		CCNA_03740	0.20	+0.0
3,909,811	-		CCNA_03740	0.21	-2.1
3,909,904	+		CCNA_03740	0.30	-0.6
3,909,912	-		CCNA_03740	0.31	-1.8
3,909,927	+		CCNA_03740	0.33	+0.0
3,909,956	-		CCNA_03740	0.36	-3.5
3,909,990	-		CCNA_03740	0.39	-2.4
3,910,005	+		CCNA_03740	0.41	-1.7
3,910,049	-		CCNA_03740	0.45	-2.1
3,910,059	-		CCNA_03740	0.46	-1.5
3,910,100	-		CCNA_03740	0.50	-1.6
3,910,146	-		CCNA_03740	0.55	-2.2
3,910,163	+		CCNA_03740	0.57	+0.0
3,910,163	+		CCNA_03740	0.57	+0.8
3,910,172	+		CCNA_03740	0.57	-2.0
3,910,189	+		CCNA_03740	0.59	+0.4
3,910,249	-		CCNA_03740	0.65	-1.7
3,910,266	-		CCNA_03740	0.67	-2.2
3,910,287	+		CCNA_03740	0.69	+0.0
3,910,287	+		CCNA_03740	0.69	-1.9
3,910,292	+		CCNA_03740	0.70	-1.0
3,910,308	+		CCNA_03740	0.71	-1.6
3,910,355	+		CCNA_03740	0.76	-1.0
3,910,451	-		CCNA_03740	0.86	-1.1
3,910,457	-		CCNA_03740	0.86	-3.6
3,910,532	-				-3.2
3,910,563	+				-2.7
3,910,563	+				+0.0
3,910,571	-				-2.2
3,910,584	-				-0.6
3,910,589	-				+0.1
3,910,594	-				-2.8
3,910,599	+				-0.8
3,910,599	+				+0.4
3,910,599	+				-3.0
3,910,599	+				-2.3
3,910,599	+				-1.5
3,910,599	+				+0.8
3,910,599	+				-1.6
3,910,607	-				-2.9
3,910,607	-				+0.7
3,910,607	-				+1.0
3,910,618	-				-0.3
3,910,627	+				-1.2
3,910,627	+				+0.4
3,910,627	+				-2.3
3,910,627	+				-1.3
3,910,635	-				+0.4
3,910,635	-				+0.0
3,910,635	-				+1.0
3,910,635	-				+0.8
3,910,664	-				-0.6
3,910,711	+				+0.4
3,910,733	-				-1.9
3,910,761	-				+0.0
3,910,774	-		CCNA_03741	0.10	-0.5
3,910,774	-		CCNA_03741	0.10	-0.8
3,910,788	-		CCNA_03741	0.11	-1.0
3,910,842	-		CCNA_03741	0.16	-1.9
3,910,847	-		CCNA_03741	0.17	-1.2
3,910,847	-		CCNA_03741	0.17	+0.8
3,910,847	-		CCNA_03741	0.17	+0.8
3,910,931	-		CCNA_03741	0.24	-1.1
3,910,944	-		CCNA_03741	0.25	-1.6
3,910,963	-		CCNA_03741	0.27	-1.6
3,911,090	-		CCNA_03741	0.38	-0.5
3,911,100	-		CCNA_03741	0.39	-1.0
3,911,131	-		CCNA_03741	0.42	-0.4
3,911,136	-		CCNA_03741	0.42	-1.0
3,911,195	-		CCNA_03741	0.48	+0.2
3,911,258	+		CCNA_03741	0.53	+2.4
3,911,292	+		CCNA_03741	0.56	+0.0
3,911,296	-		CCNA_03741	0.57	-1.3
3,911,300	-		CCNA_03741	0.57	+0.1
3,911,300	-		CCNA_03741	0.57	-0.7
3,911,357	+		CCNA_03741	0.62	-0.5
3,911,359	+		CCNA_03741	0.62	-1.0
3,911,359	+				+0.8
3,911,367	-		CCNA_03741	0.63	+0.0
3,911,413	-		CCNA_03741	0.67	+2.4
3,911,503	-		CCNA_03741	0.75	-0.2
3,911,508	+		CCNA_03741	0.75	+1.4
3,911,508	+		CCNA_03741	0.75	+0.0
3,911,516	-		CCNA_03741	0.76	-0.6
3,911,516	-		CCNA_03741	0.76	+0.0
3,911,516	-		CCNA_03741	0.76	+0.8
3,911,565	+		CCNA_03741	0.81	-0.5
3,911,565	+		CCNA_03741	0.81	-0.0
3,911,568	-		CCNA_03741	0.81	-1.6