Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03724

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,890,949	-				+0.0
3,890,951	+				+3.7
3,891,031	-				+2.9
3,891,031	-				-1.9
3,891,056	+				+3.8
3,891,088	+				+3.2
3,891,108	+				+3.1
3,891,199	-				+2.4
3,891,204	+				+3.7
3,891,226	+				+1.8
3,891,243	-				-0.6
3,891,248	+				+0.5
3,891,293	+				+0.9
3,891,301	-				+0.0
3,891,301	-				+1.0
3,891,301	-				-0.5
3,891,301	-				-0.1
3,891,301	-				+0.0
3,891,304	+				+2.1
3,891,304	+				+1.2
3,891,304	+				+1.7
3,891,304	+				+0.9
3,891,312	-				+0.4
3,891,312	-				-0.5
3,891,316	+				+0.9
3,891,341	+				+0.5
3,891,390	-				-1.3
3,891,416	+				-1.1
3,891,416	+				-1.2
3,891,416	+				-0.1
3,891,416	+				-2.7
3,891,424	-				+0.8
3,891,424	-				+2.0
3,891,464	+		CCNA_03723	0.17	-0.6
3,891,473	+		CCNA_03723	0.19	-2.6
3,891,531	+		CCNA_03723	0.32	-0.6
3,891,611	+		CCNA_03723	0.50	-0.2
3,891,612	+		CCNA_03723	0.51	-0.2
3,891,633	-		CCNA_03723	0.55	-0.8
3,891,664	+		CCNA_03723	0.63	-0.8
3,891,676	-		CCNA_03723	0.65	-0.0
3,891,685	+		CCNA_03723	0.67	+0.4
3,891,771	-		CCNA_03723	0.87	-2.3
3,891,834	-				-1.8
3,891,892	+				-1.8
3,891,923	-				-2.1
3,891,923	-				-0.8
3,891,952	+				+1.4
3,891,952	-				+4.2
3,891,969	+				-2.0
3,891,989	-				-1.3
3,892,036	-		CCNA_03724	0.16	+1.1
3,892,036	-		CCNA_03724	0.16	-2.0
3,892,103	+		CCNA_03724	0.25	-0.9
3,892,119	-		CCNA_03724	0.28	-0.6
3,892,193	-		CCNA_03724	0.38	-1.9
3,892,204	+		CCNA_03724	0.39	-0.2
3,892,211	-		CCNA_03724	0.40	-0.8
3,892,211	-		CCNA_03724	0.40	-1.0
3,892,238	+		CCNA_03724	0.44	-0.5
3,892,250	+		CCNA_03724	0.46	-1.1
3,892,292	+		CCNA_03724	0.51	-0.8
3,892,302	-		CCNA_03724	0.53	-1.8
3,892,316	+		CCNA_03724	0.55	-0.6
3,892,320	+		CCNA_03724	0.55	-1.7
3,892,380	-				+1.4
3,892,453	+		CCNA_03724	0.73	+0.4
3,892,453	+		CCNA_03724	0.73	-0.5
3,892,461	-		CCNA_03724	0.74	+0.4
3,892,461	-		CCNA_03724	0.74	-1.8
3,892,461	-		CCNA_03724	0.74	-1.0
3,892,461	-		CCNA_03724	0.74	-1.0
3,892,461	-		CCNA_03724	0.74	-0.3
3,892,461	-		CCNA_03724	0.74	-2.8
3,892,461	-		CCNA_03724	0.74	-0.2
3,892,470	-		CCNA_03724	0.76	+1.4
3,892,502	+		CCNA_03724	0.80	-0.2
3,892,510	-		CCNA_03724	0.81	-1.0
3,892,510	-		CCNA_03724	0.81	-0.5
3,892,635	+				-1.2
3,892,635	+				+0.0
3,892,640	+				+2.4
3,892,640	+				-1.3
3,892,640	+				+0.4
3,892,648	-				+3.4
3,892,686	+				+1.0
3,892,779	-				-0.9
3,892,779	-				-0.3
3,892,780	+				+1.4
3,892,798	-				-1.6
3,892,798	-				+2.4
3,892,817	+				-1.1
3,892,824	-				+0.8
3,892,840	+				+1.4
3,892,861	+				+0.4
3,892,861	+				+0.2
3,892,861	+				+1.0
3,892,861	+				+1.7
3,892,861	+				+2.1
3,892,869	-				+0.9
3,892,876	+				+0.0
3,892,894	+				-1.1
3,892,900	+		CCNA_03725	0.10	-1.0
3,892,937	-		CCNA_03725	0.13	-0.1
3,892,950	-		CCNA_03725	0.13	+0.0
3,892,960	-		CCNA_03725	0.14	+0.0
3,892,995	+		CCNA_03725	0.16	+0.6
3,892,995	+		CCNA_03725	0.16	+0.4
3,892,995	+		CCNA_03725	0.16	-1.9
3,893,003	-		CCNA_03725	0.17	-2.9
3,893,003	-		CCNA_03725	0.17	-1.5
3,893,005	+		CCNA_03725	0.17	-1.6
3,893,042	+		CCNA_03725	0.19	+1.8
3,893,050	-		CCNA_03725	0.20	-1.9
3,893,050	-		CCNA_03725	0.20	-0.6
3,893,051	+		CCNA_03725	0.20	+0.3
3,893,098	+		CCNA_03725	0.23	+0.4
3,893,114	-		CCNA_03725	0.23	-0.2
3,893,143	+		CCNA_03725	0.25	-1.4
3,893,176	+		CCNA_03725	0.27	+0.5
3,893,211	+		CCNA_03725	0.29	+1.4
3,893,219	-		CCNA_03725	0.30	-0.6
3,893,219	-		CCNA_03725	0.30	-0.2
3,893,256	+		CCNA_03725	0.32	-0.6
3,893,256	+		CCNA_03725	0.32	+1.4
3,893,277	+		CCNA_03725	0.34	-0.3
3,893,277	+		CCNA_03725	0.34	-0.0
3,893,277	+		CCNA_03725	0.34	-3.5
3,893,285	-		CCNA_03725	0.34	-1.0
3,893,285	-		CCNA_03725	0.34	-2.1
3,893,300	+				+0.4
3,893,308	-		CCNA_03725	0.35	-0.3
3,893,322	+		CCNA_03725	0.36	+0.8
3,893,353	-		CCNA_03725	0.38	-1.3
3,893,412	+		CCNA_03725	0.42	-1.7
3,893,489	-		CCNA_03725	0.47	-2.2
3,893,505	-		CCNA_03725	0.48	-1.8
3,893,557	+		CCNA_03725	0.51	-0.5
3,893,590	+		CCNA_03725	0.53	+0.2
3,893,611	+		CCNA_03725	0.54	-1.3
3,893,620	+		CCNA_03725	0.55	-0.3
3,893,620	+		CCNA_03725	0.55	-1.9
3,893,628	-		CCNA_03725	0.55	+0.4