Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03624

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,778,180	-		CCNA_03623	0.25	-1.0
3,778,233	+				+4.4
3,778,302	+		CCNA_03623	0.35	-0.0
3,778,305	-		CCNA_03623	0.36	-1.0
3,778,364	-		CCNA_03623	0.41	-0.7
3,778,414	+		CCNA_03623	0.45	-0.6
3,778,414	+		CCNA_03623	0.45	-1.0
3,778,419	+		CCNA_03623	0.45	-1.9
3,778,419	+		CCNA_03623	0.45	-0.9
3,778,419	+		CCNA_03623	0.45	-0.6
3,778,439	-		CCNA_03623	0.47	-0.6
3,778,446	-		CCNA_03623	0.47	+0.0
3,778,448	+		CCNA_03623	0.48	+0.5
3,778,449	-		CCNA_03623	0.48	-2.2
3,778,557	+		CCNA_03623	0.57	+0.9
3,778,557	+		CCNA_03623	0.57	+0.1
3,778,578	-		CCNA_03623	0.58	-0.8
3,778,578	-		CCNA_03623	0.58	-2.4
3,778,583	+		CCNA_03623	0.59	+1.2
3,778,584	+		CCNA_03623	0.59	-0.4
3,778,594	-		CCNA_03623	0.60	-1.4
3,778,651	-		CCNA_03623	0.64	-1.0
3,778,657	-		CCNA_03623	0.65	+2.4
3,778,680	+		CCNA_03623	0.67	-2.8
3,778,685	+		CCNA_03623	0.67	+0.2
3,778,685	-		CCNA_03623	0.67	-1.9
3,778,723	+		CCNA_03623	0.70	-0.9
3,778,729	+		CCNA_03623	0.71	-1.4
3,778,729	+		CCNA_03623	0.71	-1.1
3,778,742	-		CCNA_03623	0.72	+0.6
3,778,749	+		CCNA_03623	0.73	+0.1
3,778,833	+		CCNA_03623	0.80	-0.6
3,778,833	+		CCNA_03623	0.80	+0.1
3,778,841	-		CCNA_03623	0.80	-1.4
3,778,857	+		CCNA_03623	0.82	+0.9
3,778,864	+		CCNA_03623	0.82	-0.5
3,778,864	+		CCNA_03623	0.82	-0.4
3,778,865	-		CCNA_03623	0.82	-1.3
3,778,922	+		CCNA_03623	0.87	+1.9
3,778,927	-		CCNA_03623	0.87	+0.4
3,778,935	-		CCNA_03623	0.88	+0.1
3,778,955	+		CCNA_03623	0.90	+0.1
3,778,985	-				-2.4
3,779,073	+				+0.4
3,779,073	+				+1.0
3,779,083	+				+0.8
3,779,083	+				+1.4
3,779,083	+				-0.1
3,779,149	+				-1.3
3,779,175	+				-2.2
3,779,175	+				-0.9
3,779,183	-				+0.8
3,779,183	-				+1.4
3,779,183	-				+0.9
3,779,183	-				+1.0
3,779,183	-				+0.9
3,779,295	-		CCNA_03624	0.12	-1.5
3,779,295	-		CCNA_03624	0.12	-1.5
3,779,295	-		CCNA_03624	0.12	-1.7
3,779,295	-		CCNA_03624	0.12	+1.4
3,779,295	-		CCNA_03624	0.12	+0.1
3,779,295	-		CCNA_03624	0.12	-2.3
3,779,295	-		CCNA_03624	0.12	-2.5
3,779,295	-		CCNA_03624	0.12	+0.6
3,779,300	-		CCNA_03624	0.12	-1.4
3,779,300	-		CCNA_03624	0.12	-2.6
3,779,467	-		CCNA_03624	0.29	-1.8
3,779,626	-		CCNA_03624	0.44	-1.5
3,779,822	-		CCNA_03624	0.64	-0.7
3,779,886	+		CCNA_03624	0.70	+2.4
3,779,886	+		CCNA_03624	0.70	-0.7
3,779,886	+		CCNA_03624	0.70	-0.1
3,779,894	-		CCNA_03624	0.71	-0.4
3,779,894	-		CCNA_03624	0.71	-2.0
3,779,894	-		CCNA_03624	0.71	-0.9
3,779,894	-		CCNA_03624	0.71	+0.1
3,779,894	-		CCNA_03624	0.71	-1.1
3,779,894	-		CCNA_03624	0.71	+0.4
3,779,894	-		CCNA_03624	0.71	-1.1
3,779,894	-		CCNA_03624	0.71	-0.7
3,779,894	-		CCNA_03624	0.71	-0.8
3,779,894	-		CCNA_03624	0.71	+0.1
3,779,894	-		CCNA_03624	0.71	-1.4
3,779,894	-		CCNA_03624	0.71	+2.4
3,779,894	-		CCNA_03624	0.71	-1.5
3,779,909	-		CCNA_03624	0.72	+1.4
3,779,909	-		CCNA_03624	0.72	-0.1
3,779,914	-		CCNA_03624	0.73	+0.4
3,779,938	-		CCNA_03624	0.75	-1.9
3,779,938	-		CCNA_03624	0.75	-2.6
3,779,945	-		CCNA_03624	0.76	+0.1
3,780,056	-		CCNA_03624	0.87	-1.4
3,780,080	-		CCNA_03624	0.89	-2.3
3,780,085	-		CCNA_03624	0.90	+0.1
3,780,108	-				-0.5
3,780,112	+				-0.6
3,780,117	+				-1.9
3,780,120	-				+1.2
3,780,120	-				-0.9
3,780,161	+				+0.4
3,780,169	-				+0.4
3,780,200	+				-0.0
3,780,200	-				-1.0
3,780,201	-				+0.1
3,780,208	-				+1.8
3,780,226	+				-1.0
3,780,227	+				-0.7
3,780,229	+				-0.6
3,780,319	+				-0.1
3,780,327	+				-1.2
3,780,356	+				-1.4
3,780,364	-				+0.9
3,780,379	-				+1.4
3,780,434	+		CCNA_03625	0.14	-1.6
3,780,441	-		CCNA_03625	0.15	+0.9
3,780,442	-		CCNA_03625	0.15	+0.6
3,780,445	-		CCNA_03625	0.16	+1.1
3,780,460	+		CCNA_03625	0.17	-1.2
3,780,462	+		CCNA_03625	0.17	-0.3
3,780,482	+		CCNA_03625	0.20	-1.2
3,780,522	+		CCNA_03625	0.24	-0.3
3,780,522	+		CCNA_03625	0.24	+1.7
3,780,522	+		CCNA_03625	0.24	-1.2
3,780,553	+		CCNA_03625	0.27	-1.6
3,780,562	+		CCNA_03625	0.28	-0.9
3,780,586	+		CCNA_03625	0.31	-0.9
3,780,607	+		CCNA_03625	0.33	-1.7
3,780,607	+		CCNA_03625	0.33	-3.4
3,780,607	+		CCNA_03625	0.33	-1.2
3,780,615	-		CCNA_03625	0.34	+2.0
3,780,640	+		CCNA_03625	0.37	-0.2
3,780,640	+		CCNA_03625	0.37	-1.9
3,780,648	-		CCNA_03625	0.38	-1.7
3,780,676	+		CCNA_03625	0.41	-0.7
3,780,709	+		CCNA_03625	0.45	-1.9
3,780,727	-		CCNA_03625	0.47	+1.4
3,780,734	+		CCNA_03625	0.47	-2.0
3,780,734	+		CCNA_03625	0.47	-1.1
3,780,734	+		CCNA_03625	0.47	-2.0
3,780,734	+		CCNA_03625	0.47	-1.2
3,780,734	+		CCNA_03625	0.47	-1.3
3,780,742	-		CCNA_03625	0.48	-2.4
3,780,742	-		CCNA_03625	0.48	+0.4
3,780,748	-		CCNA_03625	0.49	-0.1
3,780,770	+		CCNA_03625	0.51	-3.6
3,780,770	+		CCNA_03625	0.51	-0.8
3,780,770	+		CCNA_03625	0.51	-1.0
3,780,770	+		CCNA_03625	0.51	-2.2
3,780,778	-		CCNA_03625	0.52	-1.4
3,780,778	-		CCNA_03625	0.52	-1.6
3,780,797	-		CCNA_03625	0.54	+0.9
3,780,797	-		CCNA_03625	0.54	-1.5
3,780,797	-		CCNA_03625	0.54	-0.7
3,780,797	-		CCNA_03625	0.54	-0.1
3,780,807	+		CCNA_03625	0.56	-1.4
3,780,807	+		CCNA_03625	0.56	-1.4
3,780,815	-		CCNA_03625	0.56	-1.6
3,780,824	+		CCNA_03625	0.57	-1.7
3,780,832	-		CCNA_03625	0.58	-1.1
3,780,940	+		CCNA_03625	0.70	-1.2
3,780,940	+		CCNA_03625	0.70	+0.9
3,780,940	+		CCNA_03625	0.70	-2.1
3,780,940	+		CCNA_03625	0.70	-1.4
3,780,940	+		CCNA_03625	0.70	-0.8
3,780,940	+		CCNA_03625	0.70	-2.8
3,780,948	-		CCNA_03625	0.71	-2.6
3,780,948	-		CCNA_03625	0.71	-0.9
3,780,952	-		CCNA_03625	0.72	-1.9
3,780,989	+		CCNA_03625	0.76	-2.7
3,780,989	+		CCNA_03625	0.76	+0.1
3,780,989	+		CCNA_03625	0.76	-1.3
3,780,989	+		CCNA_03625	0.76	-1.3
3,780,989	+		CCNA_03625	0.76	-0.4
3,780,989	-		CCNA_03625	0.76	-2.1
3,780,997	-		CCNA_03625	0.76	+0.9
3,781,001	+		CCNA_03625	0.77	-0.7
3,781,009	-		CCNA_03625	0.78	-1.2
3,781,024	-		CCNA_03625	0.79	+0.4
3,781,051	+		CCNA_03625	0.82	-1.9
3,781,103	-		CCNA_03625	0.88	-2.1
3,781,115	+		CCNA_03625	0.90	-0.9
3,781,132	+				-1.6
3,781,145	-				-1.8