Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03613

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,766,679	+		CCNA_03611	0.82	-0.6
3,766,684	+		CCNA_03611	0.82	+0.8
3,766,687	-		CCNA_03611	0.82	+0.8
3,766,687	-		CCNA_03611	0.82	-2.1
3,766,687	-		CCNA_03611	0.82	-1.2
3,766,692	-		CCNA_03611	0.82	-0.8
3,766,741	+		CCNA_03611	0.85	+0.8
3,766,741	+		CCNA_03611	0.85	-0.8
3,766,749	-		CCNA_03611	0.86	+0.1
3,766,749	-		CCNA_03611	0.86	-1.6
3,766,749	-		CCNA_03611	0.86	-2.6
3,766,749	-		CCNA_03611	0.86	-1.2
3,766,752	+		CCNA_03611	0.86	-1.8
3,766,760	-		CCNA_03611	0.86	-0.4
3,766,770	-		CCNA_03611	0.87	+0.4
3,766,773	+		CCNA_03611	0.87	+0.4
3,766,861	+				-0.8
3,766,869	-				-0.8
3,766,869	-				-1.8
3,766,884	-				-0.8
3,766,898	+				-0.6
3,766,906	-				-1.2
3,766,916	-				-0.5
3,766,964	-				+1.1
3,766,964	-				-0.7
3,766,969	-				+0.1
3,766,969	-				-0.4
3,766,997	+				-1.2
3,767,024	-				+1.2
3,767,024	-				+1.7
3,767,026	-				+1.6
3,767,048	-				+3.7
3,767,059	-		CCNA_03612	0.12	+3.5
3,767,070	-		CCNA_03612	0.17	+3.5
3,767,070	-		CCNA_03612	0.17	+3.7
3,767,128	-		CCNA_03612	0.40	+3.8
3,767,130	+		CCNA_03612	0.41	+0.8
3,767,160	-		CCNA_03612	0.53	+3.6
3,767,168	-		CCNA_03612	0.56	+3.6
3,767,175	-		CCNA_03612	0.59	+3.7
3,767,225	-		CCNA_03612	0.79	+4.3
3,767,244	-		CCNA_03612	0.87	+3.9
3,767,244	-		CCNA_03612	0.87	+3.8
3,767,391	+				-0.3
3,767,397	+				+0.4
3,767,398	+				+0.6
3,767,399	-				+0.4
3,767,412	+				-0.9
3,767,420	-				-1.1
3,767,420	-				+2.4
3,767,434	+				-1.2
3,767,439	+				+0.1
3,767,439	+				-0.2
3,767,439	+				+1.4
3,767,442	-				+0.4
3,767,468	-				-1.6
3,767,485	-				+0.1
3,767,487	-				-1.4
3,767,515	+				-1.2
3,767,526	+				-0.4
3,767,526	+				-0.9
3,767,542	+				+0.7
3,767,547	+				+1.2
3,767,550	-				-0.8
3,767,555	-				-0.2
3,767,618	+				+1.4
3,767,618	+				-2.0
3,767,618	+				-0.0
3,767,650	-				-0.3
3,767,667	+				-0.8
3,767,678	+				+0.1
3,767,707	+				-1.8
3,767,722	+		CCNA_03613	0.10	-0.2
3,767,722	+		CCNA_03613	0.10	-0.0
3,767,724	+		CCNA_03613	0.11	+0.4
3,767,758	+		CCNA_03613	0.18	+0.8
3,767,798	+		CCNA_03613	0.27	-0.7
3,767,798	+		CCNA_03613	0.27	-0.4
3,767,798	+		CCNA_03613	0.27	-1.3
3,767,806	-		CCNA_03613	0.29	-2.8
3,767,806	-		CCNA_03613	0.29	-1.3
3,767,806	-		CCNA_03613	0.29	-1.0
3,767,806	-		CCNA_03613	0.29	-1.6
3,767,811	+		CCNA_03613	0.30	+0.4
3,767,817	+		CCNA_03613	0.31	+1.4
3,767,817	+		CCNA_03613	0.31	-2.3
3,767,867	-		CCNA_03613	0.42	+0.1
3,767,887	+		CCNA_03613	0.47	-0.2
3,767,889	-		CCNA_03613	0.47	-1.8
3,767,900	-		CCNA_03613	0.49	+0.8
3,767,910	-		CCNA_03613	0.52	-1.7
3,767,913	-		CCNA_03613	0.52	+0.4
3,767,932	+		CCNA_03613	0.57	+2.4
3,767,937	+		CCNA_03613	0.58	-1.4
3,767,940	-		CCNA_03613	0.58	-0.6
3,767,942	+		CCNA_03613	0.59	+0.3
3,767,942	+		CCNA_03613	0.59	+0.4
3,767,944	+		CCNA_03613	0.59	-0.5
3,767,950	-		CCNA_03613	0.60	-0.8
3,767,951	-		CCNA_03613	0.61	+2.4
3,767,954	+		CCNA_03613	0.61	-1.9
3,767,972	-		CCNA_03613	0.65	-1.2
3,768,033	+		CCNA_03613	0.79	+0.8
3,768,041	-		CCNA_03613	0.81	-0.2
3,768,041	-		CCNA_03613	0.81	-0.6
3,768,041	-		CCNA_03613	0.81	-0.2
3,768,048	+		CCNA_03613	0.82	-0.5
3,768,048	+		CCNA_03613	0.82	+0.4
3,768,056	-		CCNA_03613	0.84	-0.6
3,768,096	-				-0.4
3,768,117	+				+0.3
3,768,130	+				-1.5
3,768,148	+				-0.0
3,768,160	+				+0.8
3,768,166	+				+0.2
3,768,174	-				+0.1
3,768,185	+				+1.3
3,768,193	-				+0.4
3,768,193	-				-2.0
3,768,193	-				-1.2
3,768,215	+				+1.4
3,768,223	-				-0.6
3,768,250	+		CCNA_03614	0.14	+1.8
3,768,250	+		CCNA_03614	0.14	+2.1
3,768,262	+		CCNA_03614	0.17	+3.6
3,768,276	-				+2.4
3,768,314	+		CCNA_03614	0.29	+1.3
3,768,320	+		CCNA_03614	0.31	+1.8
3,768,327	+		CCNA_03614	0.32	+1.0
3,768,334	+		CCNA_03614	0.34	+2.3
3,768,334	+		CCNA_03614	0.34	+1.9
3,768,334	+		CCNA_03614	0.34	+0.8
3,768,334	+		CCNA_03614	0.34	+2.3
3,768,342	-		CCNA_03614	0.36	-1.3
3,768,342	-		CCNA_03614	0.36	-1.1
3,768,380	+		CCNA_03614	0.45	+1.4
3,768,443	-		CCNA_03614	0.59	-0.9
3,768,444	-		CCNA_03614	0.60	+0.1
3,768,452	+		CCNA_03614	0.62	+1.2
3,768,460	-		CCNA_03614	0.63	+0.8
3,768,472	+		CCNA_03614	0.66	+1.3
3,768,512	-		CCNA_03614	0.76	-0.7
3,768,566	-		CCNA_03614	0.88	+0.5
3,768,593	+				+1.0
3,768,605	+				+1.6
3,768,605	+				+0.5
3,768,605	+				+1.4
3,768,605	+				+0.9
3,768,605	+				+1.8
3,768,618	-				-0.6
3,768,654	+				+1.7
3,768,664	-				-1.8
3,768,747	+				+0.1
3,768,773	+				+1.2
3,768,785	-				-0.7
3,768,802	+				+1.9
3,768,932	+				-0.2
3,768,945	+		CCNA_03615	0.11	+1.2
3,768,969	+		CCNA_03615	0.12	+1.9
3,768,972	-		CCNA_03615	0.12	-1.2
3,768,972	-		CCNA_03615	0.12	+0.4
3,768,997	-		CCNA_03615	0.14	-0.5
3,769,091	-		CCNA_03615	0.18	-0.8
3,769,110	+		CCNA_03615	0.19	+0.5
3,769,117	+		CCNA_03615	0.19	-0.6
3,769,117	+		CCNA_03615	0.19	+1.2