Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03611

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,764,242	+				+1.4
3,764,244	+				-0.4
3,764,244	+				+1.4
3,764,244	+				-0.8
3,764,250	-				-2.0
3,764,250	-				-0.6
3,764,250	-				+0.6
3,764,252	-				+2.4
3,764,252	-				-3.1
3,764,252	-				-2.1
3,764,266	-				-1.7
3,764,331	+				-1.7
3,764,331	+				+2.4
3,764,331	+				-1.2
3,764,331	+				-0.2
3,764,331	+				+0.1
3,764,332	+				-0.9
3,764,332	+				-1.2
3,764,332	+				-2.8
3,764,339	-				+1.4
3,764,339	-				+1.4
3,764,345	-				-0.7
3,764,378	-				+3.0
3,764,383	-				-1.2
3,764,388	-				-2.2
3,764,393	-				-0.4
3,764,393	-				-1.1
3,764,417	-		CCNA_03610	0.10	-2.6
3,764,417	-		CCNA_03610	0.10	-1.1
3,764,462	+		CCNA_03610	0.15	+1.0
3,764,462	+		CCNA_03610	0.15	+1.2
3,764,462	+		CCNA_03610	0.15	+1.2
3,764,467	+		CCNA_03610	0.16	+0.8
3,764,472	-		CCNA_03610	0.17	-0.2
3,764,475	-		CCNA_03610	0.17	-1.2
3,764,489	+		CCNA_03610	0.19	+1.4
3,764,489	+		CCNA_03610	0.19	-0.2
3,764,489	+				+2.4
3,764,497	+		CCNA_03610	0.20	-1.4
3,764,505	-		CCNA_03610	0.21	-0.4
3,764,512	+		CCNA_03610	0.21	-2.0
3,764,530	-		CCNA_03610	0.24	-0.8
3,764,532	+		CCNA_03610	0.24	+2.4
3,764,589	-		CCNA_03610	0.31	-0.0
3,764,635	+		CCNA_03610	0.36	-0.4
3,764,638	-		CCNA_03610	0.37	-1.9
3,764,643	-		CCNA_03610	0.37	-1.1
3,764,643	-		CCNA_03610	0.37	-0.8
3,764,654	+		CCNA_03610	0.39	-2.2
3,764,662	-		CCNA_03610	0.39	+2.4
3,764,679	+		CCNA_03610	0.42	-0.4
3,764,707	-		CCNA_03610	0.45	-0.8
3,764,707	-		CCNA_03610	0.45	-2.2
3,764,707	-		CCNA_03610	0.45	-0.4
3,764,707	-		CCNA_03610	0.45	+0.4
3,764,718	+		CCNA_03610	0.46	-0.3
3,764,724	+		CCNA_03610	0.47	+0.8
3,764,724	+		CCNA_03610	0.47	-0.2
3,764,726	-		CCNA_03610	0.47	-0.6
3,764,726	-		CCNA_03610	0.47	+1.1
3,764,732	-		CCNA_03610	0.48	-1.5
3,764,732	-		CCNA_03610	0.48	-0.9
3,764,771	-		CCNA_03610	0.53	-0.7
3,764,798	-		CCNA_03610	0.56	-0.8
3,764,826	-		CCNA_03610	0.59	-2.1
3,764,845	-		CCNA_03610	0.61	-1.3
3,764,852	-		CCNA_03610	0.62	-0.3
3,764,856	+		CCNA_03610	0.63	-0.4
3,764,885	-		CCNA_03610	0.66	-0.6
3,764,886	+		CCNA_03610	0.66	+0.1
3,764,911	+		CCNA_03610	0.69	-0.9
3,764,919	-		CCNA_03610	0.70	-1.5
3,764,919	-		CCNA_03610	0.70	-0.3
3,764,921	-		CCNA_03610	0.71	-1.6
3,764,941	-		CCNA_03610	0.73	-1.2
3,764,941	-		CCNA_03610	0.73	-0.1
3,764,988	+		CCNA_03610	0.79	+0.8
3,765,020	-		CCNA_03610	0.83	+0.5
3,765,020	-		CCNA_03610	0.83	-0.7
3,765,038	+		CCNA_03610	0.85	+0.1
3,765,046	-		CCNA_03610	0.86	+0.5
3,765,048	+		CCNA_03610	0.86	-1.8
3,765,048	+		CCNA_03610	0.86	-0.4
3,765,056	-		CCNA_03610	0.87	-0.6
3,765,092	-				-0.8
3,765,106	+				-0.2
3,765,106	+				+1.4
3,765,106	+				-0.4
3,765,106	+				-1.2
3,765,106	+				-0.6
3,765,106	+				+1.4
3,765,109	-				-1.1
3,765,109	-				-0.2
3,765,114	-				+0.1
3,765,114	-				-1.0
3,765,114	-				+0.5
3,765,114	-				+1.1
3,765,114	-				+0.7
3,765,182	+				-0.6
3,765,220	-				-1.2
3,765,227	-				-0.8
3,765,281	+				+0.2
3,765,317	-				-0.8
3,765,322	-				-1.1
3,765,339	-				-0.2
3,765,339	-				-0.1
3,765,339	-				-0.6
3,765,339	-				+0.8
3,765,341	+				+1.8
3,765,351	+				-0.6
3,765,351	+				-0.2
3,765,351	+				+1.1
3,765,351	+				-0.9
3,765,354	-				-0.8
3,765,359	+				-1.4
3,765,359	-				-2.2
3,765,359	-				-1.9
3,765,359	-				-1.5
3,765,361	+				+0.4
3,765,369	-				-0.2
3,765,387	+				-0.8
3,765,409	+		CCNA_03611	0.11	-2.1
3,765,411	+		CCNA_03611	0.11	-0.2
3,765,472	-		CCNA_03611	0.15	+1.4
3,765,508	+		CCNA_03611	0.17	-0.9
3,765,508	+		CCNA_03611	0.17	-1.1
3,765,508	+		CCNA_03611	0.17	+1.4
3,765,508	+		CCNA_03611	0.17	-1.8
3,765,516	-		CCNA_03611	0.17	+0.8
3,765,516	-		CCNA_03611	0.17	+0.1
3,765,525	+		CCNA_03611	0.18	+0.1
3,765,527	+		CCNA_03611	0.18	-1.8
3,765,535	-		CCNA_03611	0.18	+0.4
3,765,565	+		CCNA_03611	0.20	+1.4
3,765,579	-		CCNA_03611	0.21	+1.7
3,765,620	+		CCNA_03611	0.23	-1.3
3,765,625	+		CCNA_03611	0.23	-1.4
3,765,636	-		CCNA_03611	0.24	-0.9
3,765,651	+		CCNA_03611	0.25	-0.2
3,765,665	-		CCNA_03611	0.25	-1.4
3,765,682	+		CCNA_03611	0.26	-0.8
3,765,717	+		CCNA_03611	0.28	+1.4
3,765,727	+		CCNA_03611	0.29	+0.8
3,765,792	-		CCNA_03611	0.32	-0.8
3,765,850	+		CCNA_03611	0.36	+0.8
3,765,871	-		CCNA_03611	0.37	-2.2
3,765,886	-		CCNA_03611	0.38	-0.8
3,765,890	-		CCNA_03611	0.38	+0.8
3,765,932	+		CCNA_03611	0.40	+0.6
3,765,981	+		CCNA_03611	0.43	+1.4
3,766,001	+		CCNA_03611	0.44	-0.2
3,766,008	+		CCNA_03611	0.44	+2.4
3,766,009	-		CCNA_03611	0.44	-0.4
3,766,009	-		CCNA_03611	0.44	+0.4
3,766,015	+		CCNA_03611	0.45	+0.1
3,766,016	-		CCNA_03611	0.45	-2.1
3,766,025	+		CCNA_03611	0.45	-1.4
3,766,031	-		CCNA_03611	0.46	-0.4
3,766,043	+		CCNA_03611	0.46	-0.4
3,766,051	-				+2.4
3,766,051	-		CCNA_03611	0.47	+0.5
3,766,051	-		CCNA_03611	0.47	-1.1
3,766,051	-		CCNA_03611	0.47	+0.4
3,766,051	-		CCNA_03611	0.47	-0.8
3,766,051	-		CCNA_03611	0.47	-1.1
3,766,058	+		CCNA_03611	0.47	-0.9
3,766,066	-		CCNA_03611	0.48	-1.3
3,766,066	-		CCNA_03611	0.48	-0.6
3,766,078	-		CCNA_03611	0.48	-1.1
3,766,148	+		CCNA_03611	0.52	-0.4
3,766,155	+		CCNA_03611	0.53	-2.2
3,766,155	+		CCNA_03611	0.53	-0.9
3,766,163	-		CCNA_03611	0.53	-0.1
3,766,163	-		CCNA_03611	0.53	-0.2
3,766,163	-		CCNA_03611	0.53	-1.2
3,766,163	-		CCNA_03611	0.53	-1.8
3,766,170	+		CCNA_03611	0.53	-1.1
3,766,178	-		CCNA_03611	0.54	-1.5
3,766,178	-		CCNA_03611	0.54	-0.4
3,766,200	+		CCNA_03611	0.55	-1.2
3,766,208	-		CCNA_03611	0.56	-1.8
3,766,249	+		CCNA_03611	0.58	+1.2
3,766,257	-		CCNA_03611	0.58	+0.2
3,766,322	-		CCNA_03611	0.62	-1.3
3,766,338	+		CCNA_03611	0.63	-0.9
3,766,348	-		CCNA_03611	0.63	-0.6
3,766,373	-		CCNA_03611	0.65	-1.7
3,766,373	-		CCNA_03611	0.65	-1.3
3,766,375	+		CCNA_03611	0.65	-0.6
3,766,384	+		CCNA_03611	0.65	-0.2
3,766,482	-		CCNA_03611	0.71	+0.4
3,766,496	-		CCNA_03611	0.71	-0.6
3,766,502	-		CCNA_03611	0.72	+1.6
3,766,581	+		CCNA_03611	0.76	+0.4
3,766,592	+		CCNA_03611	0.77	-0.4
3,766,592	+		CCNA_03611	0.77	+0.1
3,766,592	+		CCNA_03611	0.77	+0.4
3,766,600	-		CCNA_03611	0.77	-1.0
3,766,600	-		CCNA_03611	0.77	+0.4
3,766,600	-		CCNA_03611	0.77	-0.8
3,766,658	-		CCNA_03611	0.81	-0.2
3,766,679	+		CCNA_03611	0.82	-0.6
3,766,684	+		CCNA_03611	0.82	+0.8
3,766,687	-		CCNA_03611	0.82	+0.8
3,766,687	-		CCNA_03611	0.82	-2.1
3,766,687	-		CCNA_03611	0.82	-1.2
3,766,692	-		CCNA_03611	0.82	-0.8
3,766,741	+		CCNA_03611	0.85	+0.8
3,766,741	+		CCNA_03611	0.85	-0.8
3,766,749	-		CCNA_03611	0.86	+0.1
3,766,749	-		CCNA_03611	0.86	-1.6
3,766,749	-		CCNA_03611	0.86	-2.6
3,766,749	-		CCNA_03611	0.86	-1.2
3,766,752	+		CCNA_03611	0.86	-1.8
3,766,760	-		CCNA_03611	0.86	-0.4
3,766,770	-		CCNA_03611	0.87	+0.4
3,766,773	+		CCNA_03611	0.87	+0.4
3,766,861	+				-0.8
3,766,869	-				-0.8
3,766,869	-				-1.8
3,766,884	-				-0.8
3,766,898	+				-0.6
3,766,906	-				-1.2
3,766,916	-				-0.5
3,766,964	-				+1.1
3,766,964	-				-0.7
3,766,969	-				+0.1
3,766,969	-				-0.4
3,766,997	+				-1.2
3,767,024	-				+1.2
3,767,024	-				+1.7
3,767,026	-				+1.6
3,767,048	-				+3.7
3,767,059	-		CCNA_03612	0.12	+3.5
3,767,070	-		CCNA_03612	0.17	+3.5
3,767,070	-		CCNA_03612	0.17	+3.7
3,767,128	-		CCNA_03612	0.40	+3.8
3,767,130	+		CCNA_03612	0.41	+0.8
3,767,160	-		CCNA_03612	0.53	+3.6
3,767,168	-		CCNA_03612	0.56	+3.6
3,767,175	-		CCNA_03612	0.59	+3.7
3,767,225	-		CCNA_03612	0.79	+4.3
3,767,244	-		CCNA_03612	0.87	+3.9
3,767,244	-		CCNA_03612	0.87	+3.8
3,767,391	+				-0.3
3,767,397	+				+0.4
3,767,398	+				+0.6
3,767,399	-				+0.4
3,767,412	+				-0.9
3,767,420	-				-1.1
3,767,420	-				+2.4
3,767,434	+				-1.2
3,767,439	+				+0.1
3,767,439	+				-0.2
3,767,439	+				+1.4
3,767,442	-				+0.4
3,767,468	-				-1.6
3,767,485	-				+0.1
3,767,487	-				-1.4
3,767,515	+				-1.2
3,767,526	+				-0.4
3,767,526	+				-0.9
3,767,542	+				+0.7
3,767,547	+				+1.2
3,767,550	-				-0.8
3,767,555	-				-0.2
3,767,618	+				+1.4
3,767,618	+				-2.0
3,767,618	+				-0.0
3,767,650	-				-0.3
3,767,667	+				-0.8
3,767,678	+				+0.1
3,767,707	+				-1.8
3,767,722	+		CCNA_03613	0.10	-0.2
3,767,722	+		CCNA_03613	0.10	-0.0
3,767,724	+		CCNA_03613	0.11	+0.4
3,767,758	+		CCNA_03613	0.18	+0.8
3,767,798	+		CCNA_03613	0.27	-0.7
3,767,798	+		CCNA_03613	0.27	-0.4
3,767,798	+		CCNA_03613	0.27	-1.3
3,767,806	-		CCNA_03613	0.29	-2.8
3,767,806	-		CCNA_03613	0.29	-1.3
3,767,806	-		CCNA_03613	0.29	-1.0
3,767,806	-		CCNA_03613	0.29	-1.6
3,767,811	+		CCNA_03613	0.30	+0.4
3,767,817	+		CCNA_03613	0.31	+1.4
3,767,817	+		CCNA_03613	0.31	-2.3
3,767,867	-		CCNA_03613	0.42	+0.1
3,767,887	+		CCNA_03613	0.47	-0.2
3,767,889	-		CCNA_03613	0.47	-1.8
3,767,900	-		CCNA_03613	0.49	+0.8
3,767,910	-		CCNA_03613	0.52	-1.7
3,767,913	-		CCNA_03613	0.52	+0.4
3,767,932	+		CCNA_03613	0.57	+2.4
3,767,937	+		CCNA_03613	0.58	-1.4
3,767,940	-		CCNA_03613	0.58	-0.6
3,767,942	+		CCNA_03613	0.59	+0.3
3,767,942	+		CCNA_03613	0.59	+0.4
3,767,944	+		CCNA_03613	0.59	-0.5
3,767,950	-		CCNA_03613	0.60	-0.8
3,767,951	-		CCNA_03613	0.61	+2.4
3,767,954	+		CCNA_03613	0.61	-1.9
3,767,972	-		CCNA_03613	0.65	-1.2