Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03581

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,737,029	+		CCNA_03579	0.43	-1.2
3,737,032	+		CCNA_03579	0.44	-0.6
3,737,039	+		CCNA_03579	0.46	+0.9
3,737,040	-		CCNA_03579	0.46	-1.8
3,737,056	+		CCNA_03579	0.51	-0.9
3,737,056	+		CCNA_03579	0.51	-1.5
3,737,056	+		CCNA_03579	0.51	-2.4
3,737,064	-		CCNA_03579	0.54	+0.1
3,737,077	+		CCNA_03579	0.58	-0.6
3,737,077	+		CCNA_03579	0.58	-0.6
3,737,084	-		CCNA_03579	0.61	+0.2
3,737,085	-		CCNA_03579	0.61	-0.7
3,737,085	-		CCNA_03579	0.61	-3.0
3,737,085	-		CCNA_03579	0.61	-0.9
3,737,094	+		CCNA_03579	0.64	-1.0
3,737,094	+		CCNA_03579	0.64	-1.6
3,737,212	+				-1.7
3,737,234	+				-0.5
3,737,242	-				-0.1
3,737,303	-				-0.7
3,737,305	+				-0.6
3,737,305	+				+0.1
3,737,311	+				+0.5
3,737,315	-				-2.3
3,737,333	-				+0.6
3,737,351	+				-2.4
3,737,390	+				-0.7
3,737,390	+				-1.7
3,737,390	+				-1.4
3,737,390	+				+0.5
3,737,390	+				-1.4
3,737,398	-				-1.3
3,737,398	-				+0.9
3,737,398	-				-1.0
3,737,398	-				-0.4
3,737,398	-				-1.1
3,737,398	-				-3.1
3,737,398	-				-0.1
3,737,398	-				-0.1
3,737,434	-				-0.2
3,737,441	+				-0.6
3,737,508	+		CCNA_03580	0.14	-0.4
3,737,508	+		CCNA_03580	0.14	+0.4
3,737,515	+		CCNA_03580	0.16	+0.4
3,737,516	-		CCNA_03580	0.16	-1.5
3,737,516	-		CCNA_03580	0.16	+0.0
3,737,516	-		CCNA_03580	0.16	-0.9
3,737,516	-		CCNA_03580	0.16	-0.4
3,737,516	-		CCNA_03580	0.16	-0.3
3,737,516	-		CCNA_03580	0.16	+0.5
3,737,516	-		CCNA_03580	0.16	+0.5
3,737,516	-		CCNA_03580	0.16	+1.2
3,737,523	-		CCNA_03580	0.18	+0.1
3,737,621	+		CCNA_03580	0.39	-0.7
3,737,631	+		CCNA_03580	0.41	-0.6
3,737,656	+		CCNA_03580	0.47	+2.4
3,737,664	-		CCNA_03580	0.48	+0.5
3,737,664	-		CCNA_03580	0.48	-1.3
3,737,677	+		CCNA_03580	0.51	+2.4
3,737,756	-		CCNA_03580	0.68	+0.3
3,737,770	-		CCNA_03580	0.71	-0.9
3,737,800	-		CCNA_03580	0.78	+0.9
3,737,806	+		CCNA_03580	0.79	-1.3
3,737,806	+		CCNA_03580	0.79	+0.1
3,737,883	-				-1.2
3,737,977	+				-2.3
3,737,989	-				-0.4
3,737,990	-				-0.7
3,738,019	+				+1.1
3,738,027	-				-0.1
3,738,060	+				-0.5
3,738,080	+				+0.6
3,738,150	-		CCNA_03581	0.17	+0.9
3,738,150	-		CCNA_03581	0.17	-0.1
3,738,345	+		CCNA_03581	0.40	+0.4
3,738,373	+		CCNA_03581	0.43	-0.3
3,738,388	-		CCNA_03581	0.45	+0.4
3,738,439	+		CCNA_03581	0.51	-1.9
3,738,439	+		CCNA_03581	0.51	-2.3
3,738,439	+		CCNA_03581	0.51	+0.3
3,738,439	+		CCNA_03581	0.51	-0.4
3,738,439	+		CCNA_03581	0.51	-2.2
3,738,447	-		CCNA_03581	0.51	-1.7
3,738,447	-		CCNA_03581	0.51	+0.9
3,738,447	-		CCNA_03581	0.51	-0.7
3,738,462	+		CCNA_03581	0.53	-0.6
3,738,465	-		CCNA_03581	0.53	-0.6
3,738,467	-		CCNA_03581	0.54	-0.1
3,738,470	-		CCNA_03581	0.54	-0.7
3,738,472	+		CCNA_03581	0.54	-0.4
3,738,504	+		CCNA_03581	0.58	-1.0
3,738,504	+		CCNA_03581	0.58	-1.7
3,738,504	+		CCNA_03581	0.58	-1.8
3,738,524	-		CCNA_03581	0.60	-1.0
3,738,552	+		CCNA_03581	0.63	-0.6
3,738,584	+		CCNA_03581	0.67	-0.7
3,738,584	+		CCNA_03581	0.67	-1.2
3,738,584	+		CCNA_03581	0.67	+0.3
3,738,584	+		CCNA_03581	0.67	+0.6
3,738,589	+		CCNA_03581	0.68	+0.9
3,738,592	-		CCNA_03581	0.68	+0.1
3,738,592	-		CCNA_03581	0.68	+2.4
3,738,592	-		CCNA_03581	0.68	+2.4
3,738,592	-		CCNA_03581	0.68	-1.8
3,738,597	-		CCNA_03581	0.69	-1.3
3,738,632	-		CCNA_03581	0.73	+0.3
3,738,639	+		CCNA_03581	0.73	-1.7
3,738,639	+		CCNA_03581	0.73	+0.1
3,738,639	+		CCNA_03581	0.73	-1.5
3,738,639	+		CCNA_03581	0.73	-2.4
3,738,647	-		CCNA_03581	0.74	-0.4
3,738,659	-		CCNA_03581	0.76	-0.7
3,738,666	+		CCNA_03581	0.77	-1.1
3,738,671	-		CCNA_03581	0.77	-0.6
3,738,674	-		CCNA_03581	0.77	+1.7
3,738,686	+		CCNA_03581	0.79	-2.5
3,738,714	-		CCNA_03581	0.82	-0.6
3,738,716	+				+0.9
3,738,716	+		CCNA_03581	0.82	-1.9
3,738,716	+		CCNA_03581	0.82	-0.3
3,738,716	+		CCNA_03581	0.82	-1.7
3,738,724	-		CCNA_03581	0.83	-0.9
3,738,724	-		CCNA_03581	0.83	-2.7
3,738,724	-		CCNA_03581	0.83	-0.4
3,738,724	-		CCNA_03581	0.83	+1.5
3,738,819	-				-1.1
3,738,834	-				-0.1
3,738,854	+				+0.1
3,738,869	+				-1.4
3,738,869	+				-1.0
3,738,870	-				+1.1
3,738,872	+				+2.4
3,738,880	-				+0.9
3,739,630	-				+0.9
3,739,630	-				-0.1
3,739,642	+				+1.4
3,739,666	+				+1.2
3,739,674	-				+0.5
3,739,674	-				+1.2
3,739,753	-		CCNA_03583	0.44	+1.1
3,739,791	+		CCNA_03583	0.64	+3.4
3,739,798	-		CCNA_03583	0.68	-1.8
3,739,811	+		CCNA_03583	0.74	+1.2
3,739,811	+		CCNA_03583	0.74	+0.1
3,739,811	+		CCNA_03583	0.74	-0.6
3,739,811	+		CCNA_03583	0.74	+0.4
3,739,819	-		CCNA_03583	0.79	+0.9
3,739,824	-		CCNA_03583	0.81	-1.4
3,739,869	+				-1.3