Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03579

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,735,902	+		CCNA_03578	0.49	+0.3
3,735,907	+		CCNA_03578	0.49	+0.3
3,735,920	-		CCNA_03578	0.50	-1.0
3,735,920	-		CCNA_03578	0.50	-0.4
3,735,927	+		CCNA_03578	0.50	+0.6
3,736,022	+		CCNA_03578	0.55	+0.6
3,736,022	+		CCNA_03578	0.55	-0.5
3,736,042	+		CCNA_03578	0.56	-0.4
3,736,042	+		CCNA_03578	0.56	-0.7
3,736,042	+		CCNA_03578	0.56	-1.4
3,736,042	+		CCNA_03578	0.56	-0.4
3,736,050	-		CCNA_03578	0.57	-0.4
3,736,050	-		CCNA_03578	0.57	+0.9
3,736,050	-		CCNA_03578	0.57	-0.6
3,736,087	+		CCNA_03578	0.59	+1.2
3,736,087	+		CCNA_03578	0.59	-0.7
3,736,087	+		CCNA_03578	0.59	-1.7
3,736,095	-		CCNA_03578	0.59	-2.0
3,736,100	-		CCNA_03578	0.59	-0.3
3,736,104	+		CCNA_03578	0.59	-0.9
3,736,120	+		CCNA_03578	0.60	-1.6
3,736,120	+		CCNA_03578	0.60	+0.1
3,736,120	+		CCNA_03578	0.60	-1.3
3,736,120	+		CCNA_03578	0.60	+0.4
3,736,120	+		CCNA_03578	0.60	+0.4
3,736,128	-		CCNA_03578	0.61	-0.7
3,736,128	-		CCNA_03578	0.61	-1.3
3,736,130	+		CCNA_03578	0.61	+3.0
3,736,197	+		CCNA_03578	0.65	-0.3
3,736,336	+		CCNA_03578	0.72	-1.0
3,736,344	-		CCNA_03578	0.72	-1.0
3,736,382	-		CCNA_03578	0.75	+2.4
3,736,503	-		CCNA_03578	0.81	-0.3
3,736,536	-		CCNA_03578	0.83	-1.1
3,736,543	+		CCNA_03578	0.83	-2.7
3,736,543	+		CCNA_03578	0.83	-1.9
3,736,543	+		CCNA_03578	0.83	-1.8
3,736,645	-		CCNA_03578	0.89	+0.1
3,736,676	+				-1.4
3,736,684	-				-0.1
3,736,689	-				-0.1
3,736,714	+				-1.2
3,736,727	+				-1.5
3,736,730	-				-0.1
3,736,755	+				-1.5
3,736,774	+				-0.9
3,736,774	+				-0.3
3,736,782	-				+0.6
3,736,793	+				+0.3
3,736,798	+				-1.1
3,736,806	-				-1.1
3,736,828	+				-0.2
3,736,846	+				+0.1
3,736,884	-				-0.4
3,736,894	+				+1.4
3,736,902	-				+1.4
3,736,902	-				-1.2
3,736,903	-				+3.5
3,736,912	+				-0.0
3,736,921	-				-2.6
3,737,029	+		CCNA_03579	0.43	-1.2
3,737,032	+		CCNA_03579	0.44	-0.6
3,737,039	+		CCNA_03579	0.46	+0.9
3,737,040	-		CCNA_03579	0.46	-1.8
3,737,056	+		CCNA_03579	0.51	-0.9
3,737,056	+		CCNA_03579	0.51	-1.5
3,737,056	+		CCNA_03579	0.51	-2.4
3,737,064	-		CCNA_03579	0.54	+0.1
3,737,077	+		CCNA_03579	0.58	-0.6
3,737,077	+		CCNA_03579	0.58	-0.6
3,737,084	-		CCNA_03579	0.61	+0.2
3,737,085	-		CCNA_03579	0.61	-0.7
3,737,085	-		CCNA_03579	0.61	-3.0
3,737,085	-		CCNA_03579	0.61	-0.9
3,737,094	+		CCNA_03579	0.64	-1.0
3,737,094	+		CCNA_03579	0.64	-1.6
3,737,212	+				-1.7
3,737,234	+				-0.5
3,737,242	-				-0.1
3,737,303	-				-0.7
3,737,305	+				-0.6
3,737,305	+				+0.1
3,737,311	+				+0.5
3,737,315	-				-2.3
3,737,333	-				+0.6
3,737,351	+				-2.4
3,737,390	+				-0.7
3,737,390	+				-1.7
3,737,390	+				-1.4
3,737,390	+				+0.5
3,737,390	+				-1.4
3,737,398	-				-1.3
3,737,398	-				+0.9
3,737,398	-				-1.0
3,737,398	-				-0.4
3,737,398	-				-1.1
3,737,398	-				-3.1
3,737,398	-				-0.1
3,737,398	-				-0.1
3,737,434	-				-0.2
3,737,441	+				-0.6
3,737,508	+		CCNA_03580	0.14	-0.4
3,737,508	+		CCNA_03580	0.14	+0.4
3,737,515	+		CCNA_03580	0.16	+0.4
3,737,516	-		CCNA_03580	0.16	-1.5
3,737,516	-		CCNA_03580	0.16	+0.0
3,737,516	-		CCNA_03580	0.16	-0.9
3,737,516	-		CCNA_03580	0.16	-0.4
3,737,516	-		CCNA_03580	0.16	-0.3
3,737,516	-		CCNA_03580	0.16	+0.5
3,737,516	-		CCNA_03580	0.16	+0.5
3,737,516	-		CCNA_03580	0.16	+1.2
3,737,523	-		CCNA_03580	0.18	+0.1
3,737,621	+		CCNA_03580	0.39	-0.7
3,737,631	+		CCNA_03580	0.41	-0.6
3,737,656	+		CCNA_03580	0.47	+2.4
3,737,664	-		CCNA_03580	0.48	+0.5
3,737,664	-		CCNA_03580	0.48	-1.3
3,737,677	+		CCNA_03580	0.51	+2.4
3,737,756	-		CCNA_03580	0.68	+0.3
3,737,770	-		CCNA_03580	0.71	-0.9
3,737,800	-		CCNA_03580	0.78	+0.9
3,737,806	+		CCNA_03580	0.79	-1.3
3,737,806	+		CCNA_03580	0.79	+0.1
3,737,883	-				-1.2
3,737,977	+				-2.3
3,737,989	-				-0.4
3,737,990	-				-0.7
3,738,019	+				+1.1
3,738,027	-				-0.1
3,738,060	+				-0.5
3,738,080	+				+0.6
3,738,150	-		CCNA_03581	0.17	+0.9
3,738,150	-		CCNA_03581	0.17	-0.1