Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03573

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,724,890	+		CCNA_03571	0.33	+1.7
3,724,906	+		CCNA_03571	0.35	-1.0
3,724,917	+		CCNA_03571	0.37	-0.2
3,724,922	+		CCNA_03571	0.37	-0.2
3,724,922	+		CCNA_03571	0.37	-0.4
3,724,925	-		CCNA_03571	0.38	-0.6
3,724,930	-		CCNA_03571	0.38	+0.8
3,724,948	-		CCNA_03571	0.41	+1.5
3,724,958	-		CCNA_03571	0.42	+0.1
3,724,989	+		CCNA_03571	0.46	+0.8
3,724,999	-		CCNA_03571	0.47	-2.3
3,725,001	+		CCNA_03571	0.47	-1.2
3,725,053	+		CCNA_03571	0.54	-2.2
3,725,053	+		CCNA_03571	0.54	+0.3
3,725,058	+				-2.0
3,725,061	-				-0.4
3,725,063	+				-0.7
3,725,063	+				+0.4
3,725,063	+				-0.7
3,725,063	+				-1.9
3,725,063	+				+0.1
3,725,066	-				-0.4
3,725,071	-				+1.4
3,725,099	-				-2.3
3,725,106	+				+0.4
3,725,106	+				-0.2
3,725,114	-				+1.4
3,725,117	+				+0.8
3,725,120	-				+0.4
3,725,125	-				+1.4
3,725,125	-				+0.8
3,725,125	-				+0.6
3,725,125	-				+1.4
3,725,127	+				-1.3
3,725,144	-				-0.6
3,725,294	-		CCNA_03571	0.84	+0.8
3,725,318	-		CCNA_03571	0.87	+0.4
3,725,342	-				+0.8
3,725,342	-				+0.8
3,725,363	-				-0.7
3,725,400	+				-1.6
3,725,400	+				-0.2
3,725,408	-				-0.2
3,725,408	-				-0.7
3,725,408	-				+1.1
3,725,419	-				-0.2
3,725,438	+				-0.9
3,725,444	+				-1.7
3,725,452	-				+2.4
3,725,452	-				-0.0
3,725,452	-				+0.8
3,725,454	+				+1.4
3,725,454	+				-1.0
3,725,462	-				-1.5
3,725,462	-				-0.2
3,725,471	+				+0.0
3,725,480	+				-3.8
3,725,487	+		CCNA_03572	0.10	-1.4
3,725,488	-		CCNA_03572	0.11	-2.0
3,725,488	-		CCNA_03572	0.11	-0.7
3,725,489	-		CCNA_03572	0.11	+1.4
3,725,492	+		CCNA_03572	0.12	-2.3
3,725,515	+		CCNA_03572	0.17	-0.4
3,725,571	-		CCNA_03572	0.30	+1.7
3,725,573	+		CCNA_03572	0.30	-1.2
3,725,588	-		CCNA_03572	0.34	-0.7
3,725,590	+		CCNA_03572	0.34	-0.6
3,725,604	+		CCNA_03572	0.38	-1.7
3,725,628	-		CCNA_03572	0.43	+0.4
3,725,633	-		CCNA_03572	0.44	-0.6
3,725,640	+		CCNA_03572	0.46	+0.8
3,725,657	+		CCNA_03572	0.50	-2.5
3,725,665	-		CCNA_03572	0.52	-1.0
3,725,665	-		CCNA_03572	0.52	-0.0
3,725,665	-		CCNA_03572	0.52	+0.8
3,725,665	-		CCNA_03572	0.52	-1.2
3,725,679	-		CCNA_03572	0.55	+0.8
3,725,679	-		CCNA_03572	0.55	-0.6
3,725,679	-		CCNA_03572	0.55	+0.8
3,725,682	+		CCNA_03572	0.56	+0.4
3,725,712	+		CCNA_03572	0.62	-2.1
3,725,720	-		CCNA_03572	0.64	-1.7
3,725,779	+		CCNA_03572	0.78	-2.2
3,725,787	-		CCNA_03572	0.80	+4.0
3,725,787	-		CCNA_03572	0.80	+3.5
3,725,860	-				+1.4
3,725,896	-				+0.8
3,725,907	-				+0.7
3,725,909	+				-0.8
3,725,946	-				-0.0
3,725,963	+				-1.7
3,725,992	+				+0.8
3,725,992	+				+1.4
3,725,992	+				+0.3
3,726,011	+				-1.5
3,726,011	+				+0.4
3,726,019	-				-1.3
3,726,020	-				-0.6
3,726,038	+				-0.7
3,726,038	+				+0.1
3,726,038	+				-1.2
3,726,038	+				-1.8
3,726,038	+				-2.0
3,726,040	+				-1.2
3,726,046	-				-0.7
3,726,046	-				-0.7
3,726,046	-				-0.7
3,726,060	+		CCNA_03573	0.10	-1.7
3,726,071	+		CCNA_03573	0.11	+1.4
3,726,074	-		CCNA_03573	0.11	-0.6
3,726,081	+		CCNA_03573	0.12	-1.6
3,726,083	+		CCNA_03573	0.12	-0.4
3,726,089	-		CCNA_03573	0.12	-1.7
3,726,103	-		CCNA_03573	0.13	-0.2
3,726,137	-		CCNA_03573	0.15	-1.8
3,726,147	-		CCNA_03573	0.15	-2.0
3,726,269	-		CCNA_03573	0.22	-1.4
3,726,293	+		CCNA_03573	0.24	+1.4
3,726,293	+		CCNA_03573	0.24	-0.2
3,726,301	-		CCNA_03573	0.24	-0.4
3,726,312	-		CCNA_03573	0.25	-0.2
3,726,348	-		CCNA_03573	0.27	-0.4
3,726,352	+		CCNA_03573	0.27	-1.9
3,726,365	-				+0.8
3,726,388	-		CCNA_03573	0.29	-0.7
3,726,391	+		CCNA_03573	0.29	+0.1
3,726,391	+		CCNA_03573	0.29	-0.0
3,726,399	-		CCNA_03573	0.30	-0.9
3,726,406	+		CCNA_03573	0.30	+0.4
3,726,428	+		CCNA_03573	0.32	-0.3
3,726,429	+		CCNA_03573	0.32	+1.4
3,726,436	-		CCNA_03573	0.32	+2.4
3,726,471	-		CCNA_03573	0.34	-0.6
3,726,494	-		CCNA_03573	0.35	+0.1
3,726,509	+		CCNA_03573	0.36	-1.7
3,726,541	-				+2.4
3,726,567	+		CCNA_03573	0.40	-0.7
3,726,603	+		CCNA_03573	0.42	-2.5
3,726,603	+		CCNA_03573	0.42	+1.4
3,726,610	+		CCNA_03573	0.42	+0.4
3,726,624	+		CCNA_03573	0.43	-0.3
3,726,674	+		CCNA_03573	0.46	+0.3
3,726,699	-		CCNA_03573	0.47	+0.4
3,726,718	+		CCNA_03573	0.48	-1.3
3,726,718	+		CCNA_03573	0.48	-0.6
3,726,726	-		CCNA_03573	0.49	+0.8
3,726,777	-		CCNA_03573	0.52	+0.6
3,726,808	+		CCNA_03573	0.53	-0.7
3,726,815	-		CCNA_03573	0.54	+0.4
3,726,830	-		CCNA_03573	0.55	-1.3
3,726,875	-		CCNA_03573	0.57	-2.0
3,726,931	+		CCNA_03573	0.60	-1.3
3,726,936	+		CCNA_03573	0.61	-2.3
3,726,967	+		CCNA_03573	0.62	-0.7
3,726,972	+		CCNA_03573	0.63	-2.6
3,726,980	-		CCNA_03573	0.63	+1.4
3,726,985	-		CCNA_03573	0.63	-0.7
3,726,987	+		CCNA_03573	0.64	-1.4
3,727,008	+		CCNA_03573	0.65	+0.1
3,727,010	+		CCNA_03573	0.65	-0.4
3,727,010	+		CCNA_03573	0.65	-1.6
3,727,010	+		CCNA_03573	0.65	+1.4
3,727,018	-		CCNA_03573	0.65	-0.2
3,727,018	-		CCNA_03573	0.65	-0.6
3,727,018	-		CCNA_03573	0.65	+0.4
3,727,035	+		CCNA_03573	0.66	+0.4
3,727,035	+		CCNA_03573	0.66	-1.0
3,727,043	-		CCNA_03573	0.67	+1.4
3,727,043	-		CCNA_03573	0.67	-0.6
3,727,234	+		CCNA_03573	0.78	-1.0
3,727,242	-		CCNA_03573	0.78	+0.4
3,727,242	-		CCNA_03573	0.78	-0.9
3,727,242	-		CCNA_03573	0.78	-0.6
3,727,274	+		CCNA_03573	0.80	+0.1
3,727,274	-		CCNA_03573	0.80	-2.9
3,727,296	+		CCNA_03573	0.81	+0.4
3,727,304	-		CCNA_03573	0.82	-0.4
3,727,304	-		CCNA_03573	0.82	+2.4
3,727,318	+		CCNA_03573	0.83	+1.4
3,727,328	+		CCNA_03573	0.83	-1.0
3,727,463	+				-0.6
3,727,471	-				+1.4
3,727,535	-				-2.7
3,727,546	+				-1.0
3,727,553	+				+0.4
3,727,572	+				+0.1
3,727,572	+				+0.1
3,727,572	+				-0.6
3,727,580	-				-2.0
3,727,580	-				-0.6
3,727,609	-				+0.4
3,727,618	+				-0.6
3,727,625	-				-1.7
3,727,723	-				+1.8
3,727,730	-				+4.1
3,727,730	-				+4.4
3,727,732	+				-1.3
3,727,735	-				+1.2
3,727,763	+				+0.4
3,727,771	-				+0.4
3,727,771	-				+0.7
3,727,781	+				-0.6
3,727,797	-				-1.1
3,727,811	-				+0.3
3,727,828	+				+0.8
3,727,836	-				-0.0
3,727,836	-				+1.3
3,727,856	+				+0.4
3,727,860	+				-2.0
3,727,869	-				+0.5
3,727,877	+				-1.1
3,727,887	+				+2.0
3,727,904	-				+0.4
3,727,906	+				+0.1
3,727,930	-				+0.3
3,727,952	-				+2.4
3,727,954	+				+2.2
3,727,961	-				+0.2
3,727,973	-				-0.6
3,728,028	+		CCNA_03574	0.12	-0.6
3,728,028	+		CCNA_03574	0.12	+1.4
3,728,033	+				+1.4
3,728,033	+		CCNA_03574	0.12	+0.1
3,728,041	-				+2.4
3,728,041	-		CCNA_03574	0.13	-1.5
3,728,079	+		CCNA_03574	0.14	+0.7
3,728,079	+		CCNA_03574	0.14	+0.3
3,728,086	+		CCNA_03574	0.14	+2.4
3,728,087	-		CCNA_03574	0.14	-1.5
3,728,103	+		CCNA_03574	0.15	+0.9
3,728,104	+		CCNA_03574	0.15	+0.6
3,728,111	-		CCNA_03574	0.15	+0.4
3,728,116	-		CCNA_03574	0.16	-2.7
3,728,133	-		CCNA_03574	0.16	-1.1
3,728,141	-		CCNA_03574	0.17	+0.1
3,728,170	+		CCNA_03574	0.18	-1.5
3,728,196	-		CCNA_03574	0.19	-2.4
3,728,254	+		CCNA_03574	0.21	+0.4
3,728,276	+		CCNA_03574	0.22	+0.1
3,728,290	+		CCNA_03574	0.23	+2.4
3,728,290	+		CCNA_03574	0.23	-0.7
3,728,290	+		CCNA_03574	0.23	-0.1
3,728,298	-		CCNA_03574	0.23	+0.9
3,728,304	-		CCNA_03574	0.23	+1.9
3,728,309	-		CCNA_03574	0.24	-2.7
3,728,319	-		CCNA_03574	0.24	-0.9
3,728,321	-		CCNA_03574	0.24	+1.3
3,728,346	+		CCNA_03574	0.25	+1.4
3,728,394	+		CCNA_03574	0.27	-1.3
3,728,402	-		CCNA_03574	0.28	+0.9
3,728,407	-		CCNA_03574	0.28	+0.9
3,728,415	-		CCNA_03574	0.28	-0.1
3,728,421	+		CCNA_03574	0.28	-1.1
3,728,439	+		CCNA_03574	0.29	-0.4
3,728,483	-		CCNA_03574	0.31	-0.1
3,728,490	+		CCNA_03574	0.31	-1.4
3,728,490	+		CCNA_03574	0.31	-1.3
3,728,490	+		CCNA_03574	0.31	-0.1
3,728,490	+		CCNA_03574	0.31	-2.7
3,728,490	+		CCNA_03574	0.31	+1.4
3,728,490	+		CCNA_03574	0.31	-1.7
3,728,490	+		CCNA_03574	0.31	-1.6
3,728,490	+		CCNA_03574	0.31	-1.0
3,728,490	+		CCNA_03574	0.31	+0.9
3,728,490	+		CCNA_03574	0.31	-0.9
3,728,493	-		CCNA_03574	0.31	-1.5
3,728,495	+		CCNA_03574	0.31	-2.3
3,728,498	-		CCNA_03574	0.32	+0.4
3,728,498	-		CCNA_03574	0.32	-0.4
3,728,498	-		CCNA_03574	0.32	+0.6
3,728,498	-		CCNA_03574	0.32	-1.4
3,728,498	-		CCNA_03574	0.32	-2.3
3,728,498	-		CCNA_03574	0.32	+2.4
3,728,498	-		CCNA_03574	0.32	-0.1
3,728,498	-		CCNA_03574	0.32	-1.7
3,728,498	-		CCNA_03574	0.32	-1.4
3,728,498	-		CCNA_03574	0.32	+2.2
3,728,498	-		CCNA_03574	0.32	+2.4
3,728,498	-		CCNA_03574	0.32	-1.7
3,728,498	-		CCNA_03574	0.32	+0.9
3,728,498	-		CCNA_03574	0.32	+0.4
3,728,498	-		CCNA_03574	0.32	-0.7
3,728,498	-		CCNA_03574	0.32	+0.4
3,728,498	-		CCNA_03574	0.32	+3.4
3,728,522	-		CCNA_03574	0.33	-1.3
3,728,588	+		CCNA_03574	0.35	+0.9
3,728,588	+		CCNA_03574	0.35	+2.4
3,728,596	-		CCNA_03574	0.36	+0.9
3,728,596	-		CCNA_03574	0.36	-1.0
3,728,596	-		CCNA_03574	0.36	-0.6
3,728,596	-		CCNA_03574	0.36	-0.4
3,728,596	-		CCNA_03574	0.36	-1.1
3,728,596	-		CCNA_03574	0.36	-1.5
3,728,612	+		CCNA_03574	0.36	-2.0
3,728,612	+		CCNA_03574	0.36	-1.8