Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03570

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,722,935	+		CCNA_03568	0.90	-1.9
3,722,935	+		CCNA_03568	0.90	+0.1
3,722,955	+				+1.8
3,722,960	+				+2.7
3,722,992	+				-0.4
3,723,000	-				-0.5
3,723,002	+				-0.1
3,723,039	+				-0.4
3,723,039	+				+0.4
3,723,047	-				+0.1
3,723,047	-				+0.1
3,723,047	-				-1.0
3,723,063	+				+2.9
3,723,067	+				+1.0
3,723,071	-				+0.1
3,723,071	-				-0.7
3,723,079	+				+2.6
3,723,080	-				-1.3
3,723,082	-				-1.6
3,723,106	-		CCNA_03569	0.11	-0.2
3,723,133	-		CCNA_03569	0.14	-0.9
3,723,167	+		CCNA_03569	0.18	-1.8
3,723,170	-		CCNA_03569	0.18	+0.8
3,723,170	-		CCNA_03569	0.18	+0.1
3,723,170	-		CCNA_03569	0.18	-0.2
3,723,170	-		CCNA_03569	0.18	+0.8
3,723,184	-		CCNA_03569	0.20	-0.6
3,723,194	-		CCNA_03569	0.21	-1.3
3,723,197	+		CCNA_03569	0.21	-0.1
3,723,203	-		CCNA_03569	0.22	-0.2
3,723,205	-		CCNA_03569	0.22	-1.7
3,723,205	-		CCNA_03569	0.22	-0.2
3,723,205	-		CCNA_03569	0.22	-1.2
3,723,222	+		CCNA_03569	0.24	-0.1
3,723,230	-		CCNA_03569	0.25	+0.1
3,723,248	-		CCNA_03569	0.27	+0.2
3,723,313	+		CCNA_03569	0.34	+1.9
3,723,313	+		CCNA_03569	0.34	-2.0
3,723,321	+		CCNA_03569	0.35	+0.8
3,723,324	-		CCNA_03569	0.35	-2.3
3,723,354	+		CCNA_03569	0.38	-1.1
3,723,354	+		CCNA_03569	0.38	+0.6
3,723,362	-		CCNA_03569	0.39	+0.4
3,723,364	+		CCNA_03569	0.39	-0.2
3,723,364	+		CCNA_03569	0.39	-0.6
3,723,370	-		CCNA_03569	0.40	+0.1
3,723,372	-		CCNA_03569	0.40	+0.3
3,723,410	+		CCNA_03569	0.44	-0.6
3,723,429	+		CCNA_03569	0.46	+0.1
3,723,437	-		CCNA_03569	0.47	-1.4
3,723,437	-		CCNA_03569	0.47	-1.8
3,723,437	-		CCNA_03569	0.47	-1.0
3,723,461	+		CCNA_03569	0.50	+0.9
3,723,491	-		CCNA_03569	0.53	-0.6
3,723,501	+		CCNA_03569	0.54	-1.5
3,723,514	-		CCNA_03569	0.56	-0.8
3,723,514	-		CCNA_03569	0.56	-0.2
3,723,519	-		CCNA_03569	0.56	-1.6
3,723,590	-		CCNA_03569	0.64	+0.1
3,723,609	+		CCNA_03569	0.66	-2.4
3,723,645	+		CCNA_03569	0.70	-0.6
3,723,645	+		CCNA_03569	0.70	+1.4
3,723,646	+		CCNA_03569	0.70	-1.7
3,723,652	-		CCNA_03569	0.71	+0.8
3,723,675	+		CCNA_03569	0.73	+0.9
3,723,675	+		CCNA_03569	0.73	+1.1
3,723,746	+		CCNA_03569	0.81	+0.3
3,723,787	+		CCNA_03569	0.85	-0.8
3,723,792	+		CCNA_03569	0.86	-1.8
3,723,792	+		CCNA_03569	0.86	-0.9
3,723,792	+		CCNA_03569	0.86	-1.8
3,723,792	+		CCNA_03569	0.86	-1.8
3,723,792	+		CCNA_03569	0.86	+2.4
3,723,792	+		CCNA_03569	0.86	+0.8
3,723,792	+		CCNA_03569	0.86	-0.2
3,723,792	+		CCNA_03569	0.86	-0.6
3,723,792	+		CCNA_03569	0.86	+0.1
3,723,792	+		CCNA_03569	0.86	-1.3
3,723,795	-		CCNA_03569	0.86	-2.0
3,723,795	-		CCNA_03569	0.86	-1.4
3,723,800	-				+0.8
3,723,800	-		CCNA_03569	0.87	-0.2
3,723,800	-		CCNA_03569	0.87	-0.9
3,723,800	-		CCNA_03569	0.87	+1.4
3,723,800	-		CCNA_03569	0.87	-1.3
3,723,805	-		CCNA_03569	0.87	-0.7
3,723,814	+		CCNA_03569	0.88	-2.4
3,723,819	-		CCNA_03569	0.89	-2.1
3,723,824	-		CCNA_03569	0.89	+2.0
3,723,824	-		CCNA_03569	0.89	-0.6
3,723,905	+				-1.3
3,723,925	-				-3.3
3,723,931	+				-1.0
3,723,939	-				-1.5
3,723,955	-				-1.9
3,723,969	+				-0.2
3,723,983	+				-1.3
3,724,008	+		CCNA_03570	0.11	+2.4
3,724,008	+		CCNA_03570	0.11	-0.7
3,724,013	+		CCNA_03570	0.11	-0.3
3,724,013	+		CCNA_03570	0.11	+1.4
3,724,013	+		CCNA_03570	0.11	-0.4
3,724,014	-		CCNA_03570	0.11	-0.4
3,724,016	-		CCNA_03570	0.12	+0.2
3,724,016	-		CCNA_03570	0.12	-0.4
3,724,036	-		CCNA_03570	0.15	-0.4
3,724,073	+		CCNA_03570	0.20	+1.8
3,724,211	-		CCNA_03570	0.40	+0.4
3,724,238	+		CCNA_03570	0.44	-0.4
3,724,246	-		CCNA_03570	0.45	-1.5
3,724,272	+		CCNA_03570	0.49	-1.7
3,724,272	+		CCNA_03570	0.49	+0.1
3,724,280	-		CCNA_03570	0.50	-0.6
3,724,303	+		CCNA_03570	0.53	-1.3
3,724,322	+		CCNA_03570	0.56	-1.0
3,724,343	-		CCNA_03570	0.59	-0.6
3,724,370	+		CCNA_03570	0.63	-0.2
3,724,370	+		CCNA_03570	0.63	-0.4
3,724,370	+		CCNA_03570	0.63	+0.4
3,724,370	+		CCNA_03570	0.63	-2.0
3,724,390	+		CCNA_03570	0.66	-0.5
3,724,437	-		CCNA_03570	0.73	-1.5
3,724,437	-		CCNA_03570	0.73	-1.3
3,724,463	-		CCNA_03570	0.77	-2.1
3,724,463	-		CCNA_03570	0.77	+0.8
3,724,474	+		CCNA_03570	0.78	-0.7
3,724,495	-		CCNA_03570	0.81	-0.9
3,724,589	-				-0.7
3,724,607	-				+1.1
3,724,626	-				-1.2
3,724,670	-				+0.1
3,724,679	+				+0.8
3,724,679	+				-2.2
3,724,681	+				-0.4
3,724,687	-				+0.4
3,724,718	+		CCNA_03571	0.12	-0.9
3,724,727	-		CCNA_03571	0.13	+0.7
3,724,733	+		CCNA_03571	0.14	-1.6
3,724,741	-		CCNA_03571	0.15	-1.7
3,724,783	+		CCNA_03571	0.20	+1.7
3,724,798	+		CCNA_03571	0.22	-0.1
3,724,798	+		CCNA_03571	0.22	-1.2
3,724,804	+		CCNA_03571	0.22	+0.7
3,724,806	-		CCNA_03571	0.23	+1.4
3,724,806	-		CCNA_03571	0.23	-0.6
3,724,842	+		CCNA_03571	0.27	+0.8
3,724,844	+		CCNA_03571	0.28	+0.3
3,724,890	+		CCNA_03571	0.33	+1.7
3,724,906	+		CCNA_03571	0.35	-1.0
3,724,917	+		CCNA_03571	0.37	-0.2
3,724,922	+		CCNA_03571	0.37	-0.2
3,724,922	+		CCNA_03571	0.37	-0.4
3,724,925	-		CCNA_03571	0.38	-0.6
3,724,930	-		CCNA_03571	0.38	+0.8
3,724,948	-		CCNA_03571	0.41	+1.5
3,724,958	-		CCNA_03571	0.42	+0.1
3,724,989	+		CCNA_03571	0.46	+0.8
3,724,999	-		CCNA_03571	0.47	-2.3
3,725,001	+		CCNA_03571	0.47	-1.2
3,725,053	+		CCNA_03571	0.54	-2.2
3,725,053	+		CCNA_03571	0.54	+0.3
3,725,058	+				-2.0
3,725,061	-				-0.4
3,725,063	+				-0.7
3,725,063	+				+0.4
3,725,063	+				-0.7
3,725,063	+				-1.9
3,725,063	+				+0.1
3,725,066	-				-0.4
3,725,071	-				+1.4
3,725,099	-				-2.3
3,725,106	+				+0.4
3,725,106	+				-0.2
3,725,114	-				+1.4
3,725,117	+				+0.8
3,725,120	-				+0.4
3,725,125	-				+1.4
3,725,125	-				+0.8
3,725,125	-				+0.6
3,725,125	-				+1.4
3,725,127	+				-1.3
3,725,144	-				-0.6
3,725,294	-		CCNA_03571	0.84	+0.8
3,725,318	-		CCNA_03571	0.87	+0.4
3,725,342	-				+0.8
3,725,342	-				+0.8
3,725,363	-				-0.7
3,725,400	+				-1.6
3,725,400	+				-0.2
3,725,408	-				-0.2
3,725,408	-				-0.7
3,725,408	-				+1.1
3,725,419	-				-0.2
3,725,438	+				-0.9
3,725,444	+				-1.7
3,725,452	-				+2.4
3,725,452	-				-0.0
3,725,452	-				+0.8
3,725,454	+				+1.4
3,725,454	+				-1.0
3,725,462	-				-1.5
3,725,462	-				-0.2
3,725,471	+				+0.0
3,725,480	+				-3.8
3,725,487	+		CCNA_03572	0.10	-1.4
3,725,488	-		CCNA_03572	0.11	-2.0
3,725,488	-		CCNA_03572	0.11	-0.7
3,725,489	-		CCNA_03572	0.11	+1.4
3,725,492	+		CCNA_03572	0.12	-2.3
3,725,515	+		CCNA_03572	0.17	-0.4
3,725,571	-		CCNA_03572	0.30	+1.7
3,725,573	+		CCNA_03572	0.30	-1.2
3,725,588	-		CCNA_03572	0.34	-0.7
3,725,590	+		CCNA_03572	0.34	-0.6
3,725,604	+		CCNA_03572	0.38	-1.7