Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03532

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,687,657	+		CCNA_03531	0.41	+1.4
3,687,657	+		CCNA_03531	0.41	-0.6
3,687,676	+		CCNA_03531	0.43	+0.1
3,687,694	-		CCNA_03531	0.44	+0.8
3,687,694	-		CCNA_03531	0.44	-1.0
3,687,721	-		CCNA_03531	0.46	+0.4
3,687,770	+		CCNA_03531	0.49	+0.1
3,687,778	-		CCNA_03531	0.49	-0.7
3,687,797	+		CCNA_03531	0.51	+0.7
3,687,802	+		CCNA_03531	0.51	+1.3
3,687,805	-		CCNA_03531	0.51	+0.7
3,687,810	-		CCNA_03531	0.51	-1.3
3,687,810	-		CCNA_03531	0.51	+1.4
3,687,817	+		CCNA_03531	0.52	+1.4
3,687,851	-		CCNA_03531	0.54	+0.8
3,687,851	-		CCNA_03531	0.54	-0.6
3,687,853	+		CCNA_03531	0.54	+1.1
3,687,863	+		CCNA_03531	0.55	+0.8
3,687,863	+		CCNA_03531	0.55	-0.2
3,687,868	+		CCNA_03531	0.55	-0.7
3,687,871	-		CCNA_03531	0.55	-0.3
3,687,871	-		CCNA_03531	0.55	-0.7
3,687,871	-		CCNA_03531	0.55	-0.1
3,687,871	-		CCNA_03531	0.55	-0.5
3,687,924	-		CCNA_03531	0.59	+1.4
3,687,938	+		CCNA_03531	0.60	+0.4
3,687,938	+		CCNA_03531	0.60	-1.5
3,687,946	-		CCNA_03531	0.60	-0.4
3,687,946	-		CCNA_03531	0.60	+0.7
3,687,946	-		CCNA_03531	0.60	-1.6
3,687,946	-		CCNA_03531	0.60	-2.4
3,688,045	-		CCNA_03531	0.67	+1.8
3,688,062	-		CCNA_03531	0.68	+0.6
3,688,069	+		CCNA_03531	0.69	+2.4
3,688,078	+		CCNA_03531	0.69	+0.1
3,688,113	-		CCNA_03531	0.71	-1.2
3,688,121	-		CCNA_03531	0.72	-0.4
3,688,141	-		CCNA_03531	0.73	+2.4
3,688,180	+		CCNA_03531	0.76	-1.4
3,688,180	+		CCNA_03531	0.76	-0.2
3,688,245	-		CCNA_03531	0.80	+0.4
3,688,255	+		CCNA_03531	0.81	+1.7
3,688,261	+		CCNA_03531	0.81	-1.7
3,688,261	+		CCNA_03531	0.81	-1.7
3,688,269	-		CCNA_03531	0.82	-2.3
3,688,271	+		CCNA_03531	0.82	-1.2
3,688,271	+		CCNA_03531	0.82	-1.6
3,688,278	-		CCNA_03531	0.82	-1.2
3,688,279	-		CCNA_03531	0.82	-0.7
3,688,279	-		CCNA_03531	0.82	+1.0
3,688,289	-		CCNA_03531	0.83	-1.2
3,688,292	+		CCNA_03531	0.83	-0.2
3,688,299	-		CCNA_03531	0.84	-0.9
3,688,330	-		CCNA_03531	0.86	+0.8
3,688,337	+		CCNA_03531	0.86	-1.2
3,688,342	+		CCNA_03531	0.87	-1.3
3,688,342	+		CCNA_03531	0.87	+0.4
3,688,345	-		CCNA_03531	0.87	-0.9
3,688,345	-		CCNA_03531	0.87	-2.2
3,688,350	-		CCNA_03531	0.87	-0.2
3,688,350	-		CCNA_03531	0.87	-0.7
3,688,350	-		CCNA_03531	0.87	-1.5
3,688,407	+				-0.4
3,688,441	-				+0.1
3,688,444	+				-1.5
3,688,445	+				+0.4
3,688,445	+				+0.8
3,688,445	+				+2.4
3,688,445	+				-0.7
3,688,450	+				+1.4
3,688,453	-				+2.4
3,688,453	-				+1.4
3,688,453	-				+1.1
3,688,468	-				-1.5
3,688,470	+				-0.6
3,688,480	+				-0.2
3,688,482	-				-0.4
3,688,488	-				+0.8
3,688,524	-				+0.1
3,688,539	+				-0.7
3,688,551	+				+1.4
3,688,553	+				-0.2
3,688,553	+				+0.1
3,688,696	-				+0.1
3,688,707	+				-1.8
3,688,707	+				-1.4
3,688,707	+				-0.2
3,688,708	-				-1.4
3,688,726	+				-2.2
3,688,769	+				-1.9
3,688,777	-				-0.6
3,688,784	+				-2.9
3,688,794	+				-1.7
3,688,797	-				+0.1
3,688,797	-				-1.2
3,688,845	+		CCNA_03532	0.11	-0.6
3,688,861	-		CCNA_03532	0.12	-0.3
3,688,891	+		CCNA_03532	0.14	+0.1
3,688,891	+		CCNA_03532	0.14	-2.4
3,688,937	+		CCNA_03532	0.17	-0.4
3,688,980	+		CCNA_03532	0.19	-0.0
3,688,980	+				+4.0
3,688,990	+		CCNA_03532	0.20	-0.9
3,688,998	-				+0.8
3,689,002	+		CCNA_03532	0.20	+0.4
3,689,008	+		CCNA_03532	0.21	-1.7
3,689,016	-		CCNA_03532	0.21	+0.8
3,689,047	-		CCNA_03532	0.23	+0.8
3,689,066	-		CCNA_03532	0.24	+0.4
3,689,068	+		CCNA_03532	0.24	-0.7
3,689,068	+		CCNA_03532	0.24	+2.5
3,689,076	-		CCNA_03532	0.25	+0.8
3,689,098	+		CCNA_03532	0.26	+0.8
3,689,098	+		CCNA_03532	0.26	+1.4
3,689,106	-		CCNA_03532	0.26	-1.0
3,689,106	-		CCNA_03532	0.26	+2.4
3,689,142	+		CCNA_03532	0.28	-1.7
3,689,150	-		CCNA_03532	0.29	+3.0
3,689,152	+		CCNA_03532	0.29	-0.2
3,689,152	+		CCNA_03532	0.29	-1.7
3,689,152	+		CCNA_03532	0.29	-0.9
3,689,152	+		CCNA_03532	0.29	-0.2
3,689,160	-		CCNA_03532	0.29	+2.4
3,689,160	-		CCNA_03532	0.29	-1.0
3,689,222	+		CCNA_03532	0.33	-2.0
3,689,222	+		CCNA_03532	0.33	-0.4
3,689,230	-		CCNA_03532	0.33	+0.1
3,689,230	-		CCNA_03532	0.33	+0.1
3,689,245	+		CCNA_03532	0.34	-0.4
3,689,245	+		CCNA_03532	0.34	-1.7
3,689,279	+		CCNA_03532	0.36	-1.9
3,689,287	-		CCNA_03532	0.37	+1.0
3,689,287	-		CCNA_03532	0.37	-0.7
3,689,287	-		CCNA_03532	0.37	-0.2
3,689,287	-		CCNA_03532	0.37	-0.7
3,689,287	-		CCNA_03532	0.37	-0.2
3,689,287	-		CCNA_03532	0.37	-1.3
3,689,292	-		CCNA_03532	0.37	-0.4
3,689,306	+		CCNA_03532	0.38	+0.6
3,689,307	-		CCNA_03532	0.38	+0.4
3,689,323	-		CCNA_03532	0.39	-1.0
3,689,369	+		CCNA_03532	0.41	-0.2
3,689,369	+		CCNA_03532	0.41	+1.4
3,689,395	+		CCNA_03532	0.43	-0.6
3,689,444	+		CCNA_03532	0.46	+0.1
3,689,444	+		CCNA_03532	0.46	-1.8
3,689,453	+		CCNA_03532	0.46	-1.3
3,689,461	-		CCNA_03532	0.47	-1.0
3,689,466	-		CCNA_03532	0.47	-2.3
3,689,481	+		CCNA_03532	0.48	-1.7
3,689,489	-		CCNA_03532	0.48	-1.6
3,689,531	-		CCNA_03532	0.51	-1.2
3,689,568	+		CCNA_03532	0.53	-1.7
3,689,570	-		CCNA_03532	0.53	-0.4
3,689,593	-		CCNA_03532	0.54	-1.7
3,689,593	-		CCNA_03532	0.54	+0.8
3,689,597	-		CCNA_03532	0.54	-2.6
3,689,625	-		CCNA_03532	0.56	-1.2
3,689,656	+		CCNA_03532	0.58	+1.5
3,689,719	+		CCNA_03532	0.61	+0.1
3,689,723	-		CCNA_03532	0.62	+0.8
3,689,726	+		CCNA_03532	0.62	-0.7
3,689,766	-		CCNA_03532	0.64	-0.5
3,689,766	-		CCNA_03532	0.64	-0.5
3,689,766	-		CCNA_03532	0.64	+1.3
3,689,766	-		CCNA_03532	0.64	+0.0
3,689,785	+		CCNA_03532	0.65	+0.8
3,689,818	-		CCNA_03532	0.67	+0.1
3,689,891	+		CCNA_03532	0.71	-0.5
3,689,891	+		CCNA_03532	0.71	-1.3
3,689,891	+		CCNA_03532	0.71	-1.4
3,689,891	+		CCNA_03532	0.71	-0.2
3,689,902	+		CCNA_03532	0.72	-2.3
3,689,902	+		CCNA_03532	0.72	+0.4
3,689,910	-		CCNA_03532	0.72	+0.4
3,689,922	-		CCNA_03532	0.73	-0.4
3,689,961	-		CCNA_03532	0.75	+1.7
3,689,986	+		CCNA_03532	0.77	+0.1
3,689,998	+		CCNA_03532	0.77	-2.3
3,689,998	+		CCNA_03532	0.77	-1.9
3,689,998	+		CCNA_03532	0.77	-1.5
3,690,004	+		CCNA_03532	0.78	-0.2
3,690,012	-		CCNA_03532	0.78	-0.6
3,690,045	-		CCNA_03532	0.80	-1.6
3,690,053	-		CCNA_03532	0.80	-0.3
3,690,058	+		CCNA_03532	0.81	-1.2
3,690,058	+		CCNA_03532	0.81	+0.3
3,690,063	+		CCNA_03532	0.81	-0.2
3,690,066	-		CCNA_03532	0.81	-0.2
3,690,066	-		CCNA_03532	0.81	-0.7
3,690,070	+		CCNA_03532	0.81	+0.3
3,690,071	-		CCNA_03532	0.81	+1.1
3,690,077	+		CCNA_03532	0.82	+0.4
3,690,080	-		CCNA_03532	0.82	+1.5
3,690,092	+		CCNA_03532	0.83	+0.2
3,690,092	+		CCNA_03532	0.83	-1.6
3,690,098	+		CCNA_03532	0.83	+1.4
3,690,098	+		CCNA_03532	0.83	-2.2
3,690,106	+		CCNA_03532	0.83	-0.2
3,690,106	-		CCNA_03532	0.83	-1.6
3,690,106	-		CCNA_03532	0.83	+0.8
3,690,108	+		CCNA_03532	0.84	-0.7
3,690,108	+		CCNA_03532	0.84	+1.0
3,690,108	+		CCNA_03532	0.84	-1.0
3,690,108	+		CCNA_03532	0.84	-1.0
3,690,108	+		CCNA_03532	0.84	-1.0
3,690,108	+		CCNA_03532	0.84	-0.8
3,690,113	+		CCNA_03532	0.84	-1.9
3,690,113	+		CCNA_03532	0.84	+2.8
3,690,116	-		CCNA_03532	0.84	+0.8
3,690,116	-		CCNA_03532	0.84	-0.7
3,690,116	-		CCNA_03532	0.84	-0.9
3,690,116	-		CCNA_03532	0.84	-1.8
3,690,116	-		CCNA_03532	0.84	-1.3
3,690,116	-		CCNA_03532	0.84	-1.2
3,690,121	-		CCNA_03532	0.84	-0.4
3,690,121	-		CCNA_03532	0.84	-1.0
3,690,121	-		CCNA_03532	0.84	+0.8
3,690,139	+		CCNA_03532	0.85	-1.2
3,690,153	-		CCNA_03532	0.86	-0.3
3,690,160	+		CCNA_03532	0.87	-0.4
3,690,182	-				+1.4
3,690,205	+		CCNA_03532	0.89	+0.6
3,690,205	+		CCNA_03532	0.89	+0.1
3,690,252	+				-1.4
3,690,279	+				-0.6
3,690,287	-				+0.4
3,690,324	-				-0.4
3,690,372	+				-1.0
3,690,372	+				+0.4
3,690,372	+				-3.1
3,690,372	+				-0.6
3,690,372	+				-1.3
3,690,372	+				-0.9
3,690,372	+				-0.7
3,690,372	+				-0.4
3,690,372	+				+0.4
3,690,372	+				+1.8
3,690,372	+				-1.4
3,690,372	+				+0.3
3,690,372	+				+0.1
3,690,372	+				-0.9
3,690,380	-				+1.7
3,690,380	-				+1.8
3,690,380	-				-1.1
3,690,380	-				-0.6
3,690,380	-				-0.7
3,690,380	-				-0.8
3,690,380	-				-1.5
3,690,380	-				+1.2
3,690,380	-				-1.0
3,690,380	-				+0.9
3,690,380	-				-0.8
3,690,383	+				+1.4
3,690,383	+				-0.3
3,690,383	+				-1.7
3,690,405	-				-0.6
3,690,477	-				-0.2
3,690,477	-				-0.4
3,690,493	+				-0.9
3,690,503	+				-1.0
3,690,521	-				+0.6
3,690,584	-		CCNA_03533	0.12	-0.0
3,690,653	-		CCNA_03533	0.15	+0.5
3,690,653	-		CCNA_03533	0.15	-0.7
3,690,659	+		CCNA_03533	0.16	-1.3
3,690,714	+		CCNA_03533	0.19	-0.4
3,690,718	-		CCNA_03533	0.19	-1.7
3,690,721	+		CCNA_03533	0.19	-0.2
3,690,721	+		CCNA_03533	0.19	+0.4
3,690,723	-		CCNA_03533	0.19	-1.3
3,690,737	+		CCNA_03533	0.20	-0.7
3,690,737	+		CCNA_03533	0.20	-1.0
3,690,772	+		CCNA_03533	0.22	+0.1
3,690,801	-		CCNA_03533	0.24	-0.5
3,690,816	+		CCNA_03533	0.25	+0.8
3,690,842	-		CCNA_03533	0.26	+0.3
3,690,850	-		CCNA_03533	0.26	-1.7
3,690,876	+		CCNA_03533	0.28	+1.4
3,690,876	+		CCNA_03533	0.28	-0.4
3,690,884	-		CCNA_03533	0.28	+0.8
3,690,913	-		CCNA_03533	0.30	-0.5
3,690,931	-		CCNA_03533	0.31	+0.6
3,690,931	-		CCNA_03533	0.31	-1.2
3,690,933	+		CCNA_03533	0.31	-0.8
3,690,934	+		CCNA_03533	0.31	-2.1
3,690,962	+		CCNA_03533	0.33	+2.4
3,690,966	+		CCNA_03533	0.33	+1.4
3,691,103	+		CCNA_03533	0.41	-1.6
3,691,103	+		CCNA_03533	0.41	+0.8
3,691,111	-		CCNA_03533	0.41	+0.9
3,691,114	+		CCNA_03533	0.41	-0.6
3,691,164	+		CCNA_03533	0.44	-0.7
3,691,190	+		CCNA_03533	0.45	+1.4
3,691,198	+		CCNA_03533	0.46	+0.4
3,691,198	+		CCNA_03533	0.46	+0.1
3,691,198	-		CCNA_03533	0.46	-2.2
3,691,199	-		CCNA_03533	0.46	-0.9
3,691,199	-		CCNA_03533	0.46	+0.4
3,691,199	-		CCNA_03533	0.46	-1.0
3,691,238	+		CCNA_03533	0.48	-0.6
3,691,283	-		CCNA_03533	0.51	-0.5
3,691,294	+		CCNA_03533	0.51	-1.8
3,691,302	-		CCNA_03533	0.52	-0.0
3,691,302	-		CCNA_03533	0.52	-3.1
3,691,311	+		CCNA_03533	0.52	-1.7
3,691,312	-		CCNA_03533	0.52	+1.4
3,691,323	+		CCNA_03533	0.53	-0.4
3,691,324	+		CCNA_03533	0.53	-2.2
3,691,329	+		CCNA_03533	0.53	-0.9
3,691,329	+		CCNA_03533	0.53	+0.1
3,691,332	-		CCNA_03533	0.53	+0.1
3,691,332	-		CCNA_03533	0.53	+1.4
3,691,332	-		CCNA_03533	0.53	-1.7
3,691,332	-		CCNA_03533	0.53	-0.9
3,691,334	+		CCNA_03533	0.53	-1.2
3,691,337	-		CCNA_03533	0.54	-1.5
3,691,337	-		CCNA_03533	0.54	+0.4
3,691,356	-		CCNA_03533	0.55	+0.4
3,691,361	+		CCNA_03533	0.55	-0.6
3,691,362	+		CCNA_03533	0.55	-0.9
3,691,370	-		CCNA_03533	0.55	-1.3
3,691,370	-		CCNA_03533	0.55	+0.2
3,691,373	+		CCNA_03533	0.56	+1.4