Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03504

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,660,606	-		CCNA_03502	0.86	+0.7
3,660,628	+		CCNA_03502	0.88	-1.1
3,660,631	-		CCNA_03502	0.88	+1.4
3,660,647	+		CCNA_03502	0.90	-1.1
3,660,708	+				-0.4
3,660,735	-				-2.1
3,660,740	-				-1.3
3,660,746	+				-0.1
3,660,751	+				-1.8
3,660,759	-				-0.1
3,660,768	+				+0.4
3,660,776	-				+1.4
3,660,776	-				-3.0
3,660,795	-				+0.7
3,660,805	+				-0.1
3,660,818	-				+1.4
3,660,819	-				+0.6
3,660,843	-				+0.4
3,660,864	-				+0.1
3,660,876	-				-0.2
3,660,917	-		CCNA_03503	0.16	+0.3
3,660,974	-		CCNA_03503	0.25	+0.1
3,660,985	-		CCNA_03503	0.27	+0.2
3,661,000	+		CCNA_03503	0.29	-1.0
3,661,010	+		CCNA_03503	0.31	+0.9
3,661,010	+		CCNA_03503	0.31	+0.2
3,661,016	+		CCNA_03503	0.32	-1.9
3,661,018	-		CCNA_03503	0.32	+0.1
3,661,018	-		CCNA_03503	0.32	-0.5
3,661,018	-		CCNA_03503	0.32	+0.2
3,661,021	+		CCNA_03503	0.32	-0.6
3,661,021	+		CCNA_03503	0.32	+0.4
3,661,021	+		CCNA_03503	0.32	+0.1
3,661,021	+		CCNA_03503	0.32	-2.4
3,661,028	-		CCNA_03503	0.33	-0.0
3,661,029	-		CCNA_03503	0.34	+1.0
3,661,029	-		CCNA_03503	0.34	+1.0
3,661,029	-		CCNA_03503	0.34	+1.9
3,661,029	-		CCNA_03503	0.34	+0.9
3,661,029	-		CCNA_03503	0.34	-1.8
3,661,029	-		CCNA_03503	0.34	-1.4
3,661,035	+		CCNA_03503	0.35	+2.1
3,661,043	-		CCNA_03503	0.36	-1.8
3,661,043	-		CCNA_03503	0.36	-0.7
3,661,051	+		CCNA_03503	0.37	+1.4
3,661,058	-		CCNA_03503	0.38	-1.0
3,661,067	+		CCNA_03503	0.40	-1.1
3,661,097	+		CCNA_03503	0.44	+1.4
3,661,105	-		CCNA_03503	0.45	-0.8
3,661,111	+		CCNA_03503	0.46	-1.7
3,661,124	-		CCNA_03503	0.48	-0.9
3,661,194	-		CCNA_03503	0.59	+0.8
3,661,195	-		CCNA_03503	0.60	-0.0
3,661,210	+		CCNA_03503	0.62	-1.0
3,661,210	+		CCNA_03503	0.62	-0.1
3,661,210	+		CCNA_03503	0.62	-1.3
3,661,237	-		CCNA_03503	0.66	-1.4
3,661,242	-		CCNA_03503	0.67	-0.4
3,661,249	+		CCNA_03503	0.68	+0.9
3,661,272	+		CCNA_03503	0.71	+0.9
3,661,280	+		CCNA_03503	0.73	+1.2
3,661,285	+		CCNA_03503	0.74	-1.1
3,661,305	-		CCNA_03503	0.77	-2.5
3,661,309	+		CCNA_03503	0.77	+0.4
3,661,310	-		CCNA_03503	0.77	-2.5
3,661,317	-		CCNA_03503	0.79	-0.6
3,661,317	-		CCNA_03503	0.79	-2.0
3,661,353	+		CCNA_03503	0.84	+0.1
3,661,379	+		CCNA_03503	0.88	-1.9
3,661,426	+				-1.8
3,661,426	+				-1.1
3,661,426	+				-0.1
3,661,426	+				+2.4
3,661,426	+				+2.7
3,661,426	+				+0.5
3,661,434	-				+1.2
3,661,434	-				-0.7
3,661,434	-				+0.3
3,661,434	-				+0.7
3,661,434	-				-0.6
3,661,508	+				-1.1
3,661,523	+				-0.1
3,661,523	+				+0.4
3,661,523	+				-1.0
3,661,523	+				+2.4
3,661,523	+				-0.7
3,661,531	-				-0.6
3,661,531	-				+0.0
3,661,531	-				-0.7
3,661,531	-				+0.2
3,661,531	-				+0.1
3,661,531	-				-0.1
3,661,585	+				+2.5
3,661,605	+				-0.1
3,661,628	+				-1.3
3,661,827	+		CCNA_03504	0.13	+3.0
3,661,830	-		CCNA_03504	0.13	+0.9
3,661,832	+		CCNA_03504	0.13	+0.1
3,661,854	+		CCNA_03504	0.14	-1.8
3,661,872	-		CCNA_03504	0.15	-0.1
3,661,891	-		CCNA_03504	0.16	-1.2
3,661,897	+		CCNA_03504	0.17	-1.1
3,661,902	+		CCNA_03504	0.17	+0.0
3,661,906	+		CCNA_03504	0.17	-0.5
3,661,910	+		CCNA_03504	0.17	+0.7
3,661,951	-		CCNA_03504	0.20	-0.9
3,661,951	-		CCNA_03504	0.20	-1.1
3,661,953	+		CCNA_03504	0.20	-0.8
3,661,953	+		CCNA_03504	0.20	-0.5
3,661,953	+		CCNA_03504	0.20	-1.3
3,661,961	-		CCNA_03504	0.20	-0.7
3,661,961	-		CCNA_03504	0.20	-1.6
3,661,961	-		CCNA_03504	0.20	-1.1
3,661,961	-		CCNA_03504	0.20	-0.7
3,661,968	-		CCNA_03504	0.20	-1.1
3,661,973	-		CCNA_03504	0.21	+1.3
3,661,985	-		CCNA_03504	0.21	-1.6
3,662,018	+		CCNA_03504	0.23	-1.0
3,662,023	+		CCNA_03504	0.24	-1.8
3,662,026	-		CCNA_03504	0.24	+1.1
3,662,048	+				+1.4
3,662,048	+		CCNA_03504	0.25	+1.1
3,662,048	+		CCNA_03504	0.25	-1.0
3,662,048	+		CCNA_03504	0.25	+2.4
3,662,048	+		CCNA_03504	0.25	+0.1
3,662,048	+		CCNA_03504	0.25	-1.0
3,662,056	-		CCNA_03504	0.25	+0.6
3,662,056	-		CCNA_03504	0.25	-0.1
3,662,056	-		CCNA_03504	0.25	-0.2
3,662,056	-		CCNA_03504	0.25	-1.4
3,662,056	-		CCNA_03504	0.25	+0.4
3,662,056	-		CCNA_03504	0.25	+0.1
3,662,056	-		CCNA_03504	0.25	+2.4
3,662,115	-		CCNA_03504	0.29	-0.9
3,662,123	+		CCNA_03504	0.29	-1.4
3,662,131	-		CCNA_03504	0.29	-0.7
3,662,131	-		CCNA_03504	0.29	-0.4
3,662,131	-		CCNA_03504	0.29	-0.9
3,662,147	-		CCNA_03504	0.30	-2.6
3,662,150	+		CCNA_03504	0.31	-0.1
3,662,150	+		CCNA_03504	0.31	-0.1
3,662,157	-		CCNA_03504	0.31	-0.6
3,662,172	-		CCNA_03504	0.32	-1.8
3,662,172	-		CCNA_03504	0.32	-1.4
3,662,172	-		CCNA_03504	0.32	-1.0
3,662,254	+		CCNA_03504	0.36	-0.3
3,662,262	-		CCNA_03504	0.37	-1.8
3,662,303	-		CCNA_03504	0.39	+0.9
3,662,314	-		CCNA_03504	0.40	-1.0
3,662,341	+		CCNA_03504	0.41	-1.1
3,662,341	+		CCNA_03504	0.41	-1.6
3,662,343	+		CCNA_03504	0.41	-0.5
3,662,344	-		CCNA_03504	0.41	+0.4
3,662,374	+		CCNA_03504	0.43	-0.4
3,662,381	-		CCNA_03504	0.43	+0.4
3,662,425	+		CCNA_03504	0.46	-1.6
3,662,443	-		CCNA_03504	0.47	-2.7
3,662,443	-		CCNA_03504	0.47	-0.4
3,662,443	-		CCNA_03504	0.47	+2.4
3,662,445	-		CCNA_03504	0.47	-1.0
3,662,469	+		CCNA_03504	0.48	-0.6
3,662,476	+		CCNA_03504	0.49	+0.2
3,662,477	+		CCNA_03504	0.49	-2.6
3,662,485	-		CCNA_03504	0.49	-0.6
3,662,511	+		CCNA_03504	0.50	+0.4
3,662,542	-		CCNA_03504	0.52	-1.1
3,662,567	+		CCNA_03504	0.54	-0.3
3,662,586	-		CCNA_03504	0.55	-0.6
3,662,593	-		CCNA_03504	0.55	-2.1
3,662,593	-		CCNA_03504	0.55	-0.6
3,662,602	+		CCNA_03504	0.55	-1.6
3,662,608	-		CCNA_03504	0.56	-1.0
3,662,625	-		CCNA_03504	0.57	+0.2
3,662,644	-		CCNA_03504	0.58	-0.9
3,662,685	-		CCNA_03504	0.60	-2.1
3,662,688	+		CCNA_03504	0.60	-1.9
3,662,694	+		CCNA_03504	0.61	+0.2
3,662,694	+		CCNA_03504	0.61	+1.8
3,662,702	-		CCNA_03504	0.61	-0.1
3,662,709	+		CCNA_03504	0.61	-1.7
3,662,711	+		CCNA_03504	0.61	-0.3
3,662,711	+		CCNA_03504	0.61	+0.9
3,662,717	-		CCNA_03504	0.62	-0.1
3,662,717	-		CCNA_03504	0.62	-0.6
3,662,740	+		CCNA_03504	0.63	+0.5
3,662,740	+		CCNA_03504	0.63	+0.4
3,662,743	-		CCNA_03504	0.63	-0.9
3,662,758	-		CCNA_03504	0.64	+0.1
3,662,795	+		CCNA_03504	0.66	+1.5
3,662,797	+		CCNA_03504	0.66	+0.3
3,662,808	-		CCNA_03504	0.67	-1.0
3,662,820	+		CCNA_03504	0.67	-1.3
3,662,823	-		CCNA_03504	0.68	-0.1
3,662,863	+		CCNA_03504	0.70	+1.4
3,662,878	+		CCNA_03504	0.71	+0.4
3,662,891	-		CCNA_03504	0.71	-0.1
3,662,908	+		CCNA_03504	0.72	+0.9
3,662,908	+		CCNA_03504	0.72	+1.7
3,662,916	-		CCNA_03504	0.73	-0.6
3,662,916	-		CCNA_03504	0.73	-0.7
3,662,916	-		CCNA_03504	0.73	-2.2
3,662,916	-		CCNA_03504	0.73	-0.9
3,662,950	+		CCNA_03504	0.75	+2.4
3,662,962	+		CCNA_03504	0.75	+2.0
3,662,992	-		CCNA_03504	0.77	-1.0
3,662,998	-		CCNA_03504	0.77	-1.3
3,663,007	+		CCNA_03504	0.78	+1.9
3,663,016	-		CCNA_03504	0.78	-0.1
3,663,054	-		CCNA_03504	0.80	+0.3
3,663,057	+		CCNA_03504	0.81	+1.6
3,663,057	+		CCNA_03504	0.81	-0.9
3,663,065	+		CCNA_03504	0.81	+1.0
3,663,065	-		CCNA_03504	0.81	-0.2
3,663,065	-		CCNA_03504	0.81	-1.6
3,663,070	+		CCNA_03504	0.81	+0.3
3,663,073	-		CCNA_03504	0.81	+0.1
3,663,078	-		CCNA_03504	0.82	+0.9
3,663,078	-		CCNA_03504	0.82	+0.4
3,663,078	-		CCNA_03504	0.82	+0.7
3,663,101	-		CCNA_03504	0.83	+0.4
3,663,150	+		CCNA_03504	0.86	+0.7
3,663,156	+		CCNA_03504	0.86	+0.4
3,663,231	+				+0.0
3,663,231	+				-0.7
3,663,256	+				+0.0
3,663,278	-				-0.1
3,663,285	-				-0.9
3,663,295	-				-1.1
3,663,300	-				+0.4
3,663,300	-				+0.8
3,663,300	-				+1.0
3,663,306	-				+1.1
3,663,319	+				+0.3
3,663,324	+				-0.3
3,663,327	-				+1.8
3,663,346	+				+1.1
3,663,394	-				+0.8
3,663,397	-				+0.4
3,663,423	-				+0.1
3,663,423	-				+1.4
3,663,423	-				+0.9
3,663,425	+				-0.1
3,663,433	-				-0.6
3,663,449	+				+0.2
3,663,513	+				-1.8
3,663,513	+				-1.9
3,663,513	+				-1.8
3,663,513	+				-1.7
3,663,513	+				-0.6
3,663,521	-				+2.7
3,663,521	-				+2.8
3,663,563	-		CCNA_03505	0.17	+2.5
3,663,571	+		CCNA_03505	0.19	-0.9
3,663,608	-		CCNA_03505	0.27	+1.9
3,663,631	+		CCNA_03505	0.31	-2.7
3,663,676	-		CCNA_03505	0.41	+2.7
3,663,697	-		CCNA_03505	0.45	+0.9
3,663,702	+		CCNA_03505	0.46	-1.6
3,663,710	-		CCNA_03505	0.48	+0.8
3,663,759	+		CCNA_03505	0.58	+0.1
3,663,759	+		CCNA_03505	0.58	-1.4
3,663,759	-		CCNA_03505	0.58	-0.0
3,663,767	-		CCNA_03505	0.60	+2.0
3,663,803	+		CCNA_03505	0.67	-0.7
3,663,808	+		CCNA_03505	0.68	-1.1
3,663,811	-		CCNA_03505	0.69	+1.3
3,663,818	+		CCNA_03505	0.70	-0.9
3,663,826	-		CCNA_03505	0.72	-0.8
3,663,858	-		CCNA_03505	0.78	-0.6
3,663,866	-		CCNA_03505	0.80	-0.8
3,663,877	+		CCNA_03505	0.82	-0.4
3,663,882	+		CCNA_03505	0.83	+1.1
3,663,895	-		CCNA_03505	0.86	+2.2
3,663,895	-		CCNA_03505	0.86	+1.4
3,663,899	+		CCNA_03505	0.87	-0.7
3,663,900	-		CCNA_03505	0.87	+1.7
3,663,907	-		CCNA_03505	0.89	+0.6
3,663,966	-				-1.6
3,663,971	-				+1.4
3,663,973	-				+0.1
3,663,973	-				+1.4
3,663,996	-				-0.1
3,664,000	+				-0.7
3,664,003	+				-1.0
3,664,008	-				-0.4
3,664,011	-				+0.5
3,664,018	-				-0.5
3,664,054	-				-1.2
3,664,080	+				+4.3
3,664,081	+				-1.8
3,664,087	+				+0.3
3,664,087	+				-0.2
3,664,087	+				+0.7
3,664,095	-				+0.9
3,664,148	-				+1.4
3,664,186	+		CCNA_03506	0.16	+0.4
3,664,191	+		CCNA_03506	0.17	+1.0
3,664,194	-		CCNA_03506	0.18	-0.1
3,664,199	-		CCNA_03506	0.19	-2.4
3,664,257	+		CCNA_03506	0.28	+1.6
3,664,262	+		CCNA_03506	0.29	+0.9
3,664,272	+		CCNA_03506	0.31	+0.1
3,664,272	+		CCNA_03506	0.31	+0.4
3,664,272	+		CCNA_03506	0.31	-0.3
3,664,272	+		CCNA_03506	0.31	+0.4
3,664,293	-		CCNA_03506	0.35	+0.4
3,664,307	+		CCNA_03506	0.37	+2.4
3,664,326	-		CCNA_03506	0.40	+1.6
3,664,334	-		CCNA_03506	0.41	-0.6
3,664,377	+		CCNA_03506	0.49	+1.5
3,664,385	+		CCNA_03506	0.50	+1.0
3,664,385	-		CCNA_03506	0.50	-0.1