Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03488

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,647,960	+		CCNA_03485	0.90	+2.5
3,647,968	-				-0.5
3,647,968	-				-0.0
3,648,006	+				+0.5
3,648,064	-				-1.1
3,648,064	-				+0.3
3,648,067	-				+0.5
3,648,087	+				-1.7
3,648,087	+				-0.1
3,648,102	-				-1.9
3,648,119	-				+0.6
3,648,163	+		CCNA_03486	0.16	+1.1
3,648,163	+		CCNA_03486	0.16	+0.9
3,648,171	-		CCNA_03486	0.17	-0.1
3,648,173	+		CCNA_03486	0.18	-0.9
3,648,173	+		CCNA_03486	0.18	-0.4
3,648,179	+		CCNA_03486	0.19	-0.1
3,648,179	+		CCNA_03486	0.19	+1.0
3,648,186	+		CCNA_03486	0.21	-0.0
3,648,186	+		CCNA_03486	0.21	+1.5
3,648,186	+		CCNA_03486	0.21	-0.1
3,648,186	+		CCNA_03486	0.21	+0.5
3,648,186	+		CCNA_03486	0.21	-0.4
3,648,186	+		CCNA_03486	0.21	-0.7
3,648,206	+		CCNA_03486	0.26	-0.5
3,648,225	-		CCNA_03486	0.30	-0.9
3,648,274	+		CCNA_03486	0.41	-1.5
3,648,274	+		CCNA_03486	0.41	+0.5
3,648,274	+		CCNA_03486	0.41	-0.1
3,648,276	+		CCNA_03486	0.42	+0.1
3,648,282	-		CCNA_03486	0.43	-1.0
3,648,284	-		CCNA_03486	0.44	-1.2
3,648,314	-		CCNA_03486	0.51	-0.1
3,648,320	+		CCNA_03486	0.52	+1.5
3,648,352	+		CCNA_03486	0.60	+0.9
3,648,352	+		CCNA_03486	0.60	+0.5
3,648,360	-		CCNA_03486	0.62	+0.8
3,648,360	-		CCNA_03486	0.62	-0.4
3,648,360	-		CCNA_03486	0.62	+1.5
3,648,375	-		CCNA_03486	0.65	-0.1
3,648,390	-		CCNA_03486	0.69	+0.1
3,648,399	+		CCNA_03486	0.71	-0.9
3,648,410	+		CCNA_03486	0.73	-0.4
3,648,418	-		CCNA_03486	0.75	+0.3
3,648,418	-		CCNA_03486	0.75	+0.6
3,648,418	-		CCNA_03486	0.75	+0.9
3,648,432	+		CCNA_03486	0.78	+0.9
3,648,451	+		CCNA_03486	0.83	-0.4
3,648,475	-		CCNA_03486	0.88	+1.1
3,648,497	-				-1.2
3,648,563	-				-0.4
3,648,724	-		CCNA_03487	0.16	+0.5
3,648,724	-		CCNA_03487	0.16	-1.1
3,648,724	-		CCNA_03487	0.16	-1.5
3,648,751	-		CCNA_03487	0.28	+0.1
3,648,767	-		CCNA_03487	0.35	+0.9
3,648,768	-		CCNA_03487	0.36	+0.9
3,648,789	-		CCNA_03487	0.45	+0.6
3,648,813	-		CCNA_03487	0.55	+0.9
3,648,840	+		CCNA_03487	0.67	+0.5
3,648,840	+		CCNA_03487	0.67	-1.4
3,648,841	+		CCNA_03487	0.68	+2.5
3,648,841	+		CCNA_03487	0.68	-0.4
3,648,849	-		CCNA_03487	0.71	+1.5
3,648,881	-		CCNA_03487	0.85	+0.9
3,648,926	-				+0.1
3,648,928	+				-0.1
3,648,928	+				-0.8
3,648,928	+				+0.9
3,648,928	+				-0.1
3,648,928	+				+1.5
3,648,936	-				-1.2
3,648,944	-				+1.5
3,648,944	-				-1.5
3,649,121	-		CCNA_03488	0.39	+0.6
3,649,126	-		CCNA_03488	0.40	+0.1
3,649,163	-		CCNA_03488	0.47	+2.4
3,649,197	-		CCNA_03488	0.53	-0.6
3,649,212	-		CCNA_03488	0.56	+0.6
3,649,217	-		CCNA_03488	0.57	-1.9
3,649,223	+		CCNA_03488	0.58	-0.7
3,649,242	+		CCNA_03488	0.61	-0.7
3,649,250	-		CCNA_03488	0.63	+0.9
3,649,250	-		CCNA_03488	0.63	-1.3
3,649,250	-		CCNA_03488	0.63	-0.9
3,649,250	-		CCNA_03488	0.63	-0.4
3,649,295	-		CCNA_03488	0.71	+0.2
3,649,295	-		CCNA_03488	0.71	-1.3
3,649,310	+		CCNA_03488	0.74	-0.1
3,649,375	-		CCNA_03488	0.86	-0.9
3,649,412	-				-0.7
3,649,427	+				-1.5
3,649,435	-				-1.2
3,649,473	+				-1.1
3,649,481	-				-1.0
3,649,513	+				-0.0
3,649,519	-				+0.4
3,649,521	-				+1.4
3,649,526	-				-0.1
3,649,576	+				-0.9
3,649,582	+				-0.9
3,649,582	+				-0.4
3,649,582	+				-0.1
3,649,590	-				-0.7
3,649,605	-				-0.6
3,649,665	-		CCNA_03489	0.11	-0.3
3,649,673	-		CCNA_03489	0.11	-0.4
3,649,681	+		CCNA_03489	0.12	+1.1
3,649,686	+		CCNA_03489	0.13	+0.4
3,649,705	+		CCNA_03489	0.15	-1.4
3,649,733	-		CCNA_03489	0.18	-0.1
3,649,739	-		CCNA_03489	0.18	-0.4
3,649,753	+		CCNA_03489	0.20	-0.6
3,649,753	+		CCNA_03489	0.20	-0.5
3,649,818	-		CCNA_03489	0.26	-1.5
3,649,818	-		CCNA_03489	0.26	-1.5
3,649,818	-		CCNA_03489	0.26	-0.1
3,649,865	+		CCNA_03489	0.31	-2.6
3,649,890	-		CCNA_03489	0.34	-0.6
3,649,924	-		CCNA_03489	0.37	-0.1
3,649,977	-		CCNA_03489	0.43	-1.5
3,650,003	+		CCNA_03489	0.46	-0.9
3,650,050	+		CCNA_03489	0.50	+3.4
3,650,050	+		CCNA_03489	0.50	+0.1
3,650,058	-		CCNA_03489	0.51	+0.9
3,650,058	-		CCNA_03489	0.51	-2.2
3,650,085	+		CCNA_03489	0.54	+1.4
3,650,157	+		CCNA_03489	0.61	-0.1
3,650,165	-		CCNA_03489	0.62	-0.4
3,650,175	-		CCNA_03489	0.63	+2.4
3,650,176	+		CCNA_03489	0.63	-1.7
3,650,176	+		CCNA_03489	0.63	-1.0
3,650,197	+		CCNA_03489	0.66	+0.9
3,650,205	-		CCNA_03489	0.66	+0.1
3,650,205	-		CCNA_03489	0.66	+0.9
3,650,229	+		CCNA_03489	0.69	+1.4
3,650,269	-		CCNA_03489	0.73	-0.7
3,650,375	+		CCNA_03489	0.84	+0.3
3,650,378	-		CCNA_03489	0.84	-0.6
3,650,378	-		CCNA_03489	0.84	-0.7
3,650,383	-		CCNA_03489	0.85	-0.9
3,650,383	-		CCNA_03489	0.85	-0.6
3,650,384	-		CCNA_03489	0.85	-0.7
3,650,385	+		CCNA_03489	0.85	-0.1