Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03457

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,619,650	+				+2.2
3,619,654	+				+0.4
3,619,700	+				-0.3
3,619,726	+				-1.0
3,619,735	+		CCNA_03456	0.11	-0.1
3,619,735	+		CCNA_03456	0.11	-1.1
3,619,743	-		CCNA_03456	0.12	-1.4
3,619,743	-		CCNA_03456	0.12	+0.5
3,619,774	+		CCNA_03456	0.15	+0.3
3,619,792	-		CCNA_03456	0.17	+0.5
3,619,792	-		CCNA_03456	0.17	-1.1
3,619,870	-		CCNA_03456	0.27	+0.9
3,619,870	-		CCNA_03456	0.27	-0.3
3,619,870	-		CCNA_03456	0.27	-0.7
3,619,896	+		CCNA_03456	0.30	-1.2
3,619,921	-		CCNA_03456	0.33	+0.2
3,619,930	-		CCNA_03456	0.34	-1.9
3,619,930	-		CCNA_03456	0.34	-0.1
3,619,930	-		CCNA_03456	0.34	+0.5
3,619,930	-		CCNA_03456	0.34	-1.0
3,619,976	+		CCNA_03456	0.39	+2.5
3,620,001	-		CCNA_03456	0.42	-1.5
3,620,089	-		CCNA_03456	0.53	-1.9
3,620,091	+		CCNA_03456	0.53	-1.6
3,620,109	+		CCNA_03456	0.55	+0.5
3,620,109	+				+2.5
3,620,117	-		CCNA_03456	0.56	+0.2
3,620,138	+		CCNA_03456	0.59	-0.5
3,620,138	+		CCNA_03456	0.59	+0.3
3,620,138	+		CCNA_03456	0.59	+2.5
3,620,146	-		CCNA_03456	0.60	-1.7
3,620,163	+		CCNA_03456	0.62	-2.0
3,620,176	+		CCNA_03456	0.63	-0.7
3,620,193	+		CCNA_03456	0.65	-1.8
3,620,226	+		CCNA_03456	0.69	+0.9
3,620,257	-		CCNA_03456	0.73	+2.5
3,620,268	+		CCNA_03456	0.74	+1.5
3,620,268	-		CCNA_03456	0.74	-0.2
3,620,289	-		CCNA_03456	0.77	+1.1
3,620,304	-		CCNA_03456	0.79	-1.0
3,620,327	-		CCNA_03456	0.81	+0.3
3,620,354	-		CCNA_03456	0.85	+0.1
3,620,354	-		CCNA_03456	0.85	-1.2
3,620,387	+		CCNA_03456	0.89	-0.3
3,620,434	+				+0.5
3,620,441	+				+0.9
3,620,474	-				+0.4
3,620,528	+				+1.5
3,620,543	-				+0.9
3,620,581	-		CCNA_03457	0.12	-0.2
3,620,599	-		CCNA_03457	0.14	+0.8
3,620,603	+		CCNA_03457	0.15	-0.7
3,620,609	+		CCNA_03457	0.16	-0.8
3,620,609	+		CCNA_03457	0.16	-3.4
3,620,609	-		CCNA_03457	0.16	-1.3
3,620,609	-		CCNA_03457	0.16	+0.4
3,620,610	-		CCNA_03457	0.16	-0.1
3,620,629	+		CCNA_03457	0.18	+1.9
3,620,640	-		CCNA_03457	0.19	+1.5
3,620,650	+		CCNA_03457	0.21	+0.2
3,620,655	+		CCNA_03457	0.21	-0.1
3,620,655	+		CCNA_03457	0.21	-0.1
3,620,655	+		CCNA_03457	0.21	-1.0
3,620,663	-		CCNA_03457	0.22	-1.7
3,620,672	+		CCNA_03457	0.24	-0.7
3,620,672	+		CCNA_03457	0.24	-0.7
3,620,680	-		CCNA_03457	0.25	+0.3
3,620,680	-		CCNA_03457	0.25	+0.0
3,620,685	-		CCNA_03457	0.25	-0.7
3,620,689	+		CCNA_03457	0.26	-0.8
3,620,689	+		CCNA_03457	0.26	+1.5
3,620,697	-		CCNA_03457	0.27	-1.7
3,620,721	+		CCNA_03457	0.30	-0.7
3,620,723	+		CCNA_03457	0.30	+1.2
3,620,798	+		CCNA_03457	0.40	-1.3
3,620,799	-		CCNA_03457	0.40	-1.5
3,620,814	+		CCNA_03457	0.42	+0.5
3,620,819	+		CCNA_03457	0.42	-1.2
3,620,838	-		CCNA_03457	0.45	-1.2
3,620,859	-		CCNA_03457	0.48	-1.0
3,620,977	-		CCNA_03457	0.63	+0.1
3,621,031	+		CCNA_03457	0.70	+1.5
3,621,048	-		CCNA_03457	0.72	-1.8
3,621,080	-		CCNA_03457	0.76	+0.9
3,621,114	-		CCNA_03457	0.80	-0.7
3,621,124	+		CCNA_03457	0.82	+0.9
3,621,156	+		CCNA_03457	0.86	-0.7
3,621,156	+		CCNA_03457	0.86	+1.2
3,621,164	-		CCNA_03457	0.87	+0.2
3,621,164	-		CCNA_03457	0.87	-0.6
3,621,164	-		CCNA_03457	0.87	-0.4
3,621,164	-		CCNA_03457	0.87	-0.7
3,621,227	+				-1.1
3,621,245	+				+0.9
3,621,342	-		CCNA_03458	0.36	+0.7
3,621,344	+		CCNA_03458	0.37	+0.5
3,621,357	+		CCNA_03458	0.40	-0.5
3,621,357	-		CCNA_03458	0.40	+0.3
3,621,376	+		CCNA_03458	0.43	+1.5
3,621,376	+		CCNA_03458	0.43	-1.3
3,621,376	+		CCNA_03458	0.43	-0.1
3,621,444	-		CCNA_03458	0.57	-1.8
3,621,444	-		CCNA_03458	0.57	+0.4
3,621,468	-		CCNA_03458	0.62	+0.3
3,621,538	+		CCNA_03458	0.77	+0.9
3,621,591	-		CCNA_03458	0.88	+1.0
3,621,644	+				+0.9
3,621,645	-				+0.9
3,621,652	-		CCNA_03992	0.14	+0.5
3,621,790	-				+0.9
3,621,883	+				+2.5
3,621,955	-				-0.3
3,621,978	-				+0.2
3,622,045	+		CCNA_03459	0.12	+0.9
3,622,045	+		CCNA_03459	0.12	+0.2
3,622,045	+		CCNA_03459	0.12	-0.8
3,622,046	-		CCNA_03459	0.12	+2.1
3,622,052	+		CCNA_03459	0.13	-0.1
3,622,060	-		CCNA_03459	0.13	-0.6
3,622,080	+		CCNA_03459	0.14	-0.8
3,622,083	-		CCNA_03459	0.14	-0.7
3,622,122	+		CCNA_03459	0.17	-0.5
3,622,126	-		CCNA_03459	0.17	-0.2
3,622,144	-		CCNA_03459	0.18	-1.1
3,622,221	-		CCNA_03459	0.22	-1.0
3,622,234	+		CCNA_03459	0.23	+0.6
3,622,234	+		CCNA_03459	0.23	-0.1
3,622,242	-		CCNA_03459	0.23	-1.2
3,622,242	-		CCNA_03459	0.23	+0.9
3,622,242	-		CCNA_03459	0.23	+0.2
3,622,247	-		CCNA_03459	0.24	+0.7