Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03404

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,571,710	-		CCNA_03402	0.49	-1.0
3,571,716	+		CCNA_03402	0.50	+1.0
3,571,724	-		CCNA_03402	0.50	-0.6
3,571,729	-		CCNA_03402	0.51	-0.9
3,571,793	-		CCNA_03402	0.58	+0.2
3,571,810	-		CCNA_03402	0.59	-1.5
3,571,831	-		CCNA_03402	0.61	+0.1
3,571,833	+		CCNA_03402	0.62	-3.1
3,571,833	+		CCNA_03402	0.62	-1.8
3,571,841	-		CCNA_03402	0.62	-1.5
3,571,841	-		CCNA_03402	0.62	+0.2
3,571,841	-		CCNA_03402	0.62	+0.8
3,571,851	+		CCNA_03402	0.63	+3.1
3,571,858	-		CCNA_03402	0.64	+0.9
3,571,894	-		CCNA_03402	0.68	+0.6
3,571,913	-		CCNA_03402	0.70	-0.7
3,571,931	+		CCNA_03402	0.72	-0.5
3,571,931	+		CCNA_03402	0.72	-1.0
3,571,939	-		CCNA_03402	0.73	+1.2
3,571,939	-		CCNA_03402	0.73	-1.4
3,571,939	-		CCNA_03402	0.73	-0.7
3,571,939	-		CCNA_03402	0.73	+0.9
3,571,939	-		CCNA_03402	0.73	+0.8
3,571,941	+		CCNA_03402	0.73	-0.3
3,571,941	+		CCNA_03402	0.73	+0.8
3,571,949	-		CCNA_03402	0.74	-0.5
3,571,949	-		CCNA_03402	0.74	-1.2
3,571,979	+		CCNA_03402	0.77	+0.2
3,571,999	+		CCNA_03402	0.79	-0.7
3,571,999	+		CCNA_03402	0.79	+0.2
3,571,999	+		CCNA_03402	0.79	+0.7
3,571,999	+		CCNA_03402	0.79	-1.1
3,571,999	+		CCNA_03402	0.79	-1.0
3,572,007	-		CCNA_03402	0.79	-3.2
3,572,007	-		CCNA_03402	0.79	+0.1
3,572,007	-		CCNA_03402	0.79	+0.3
3,572,007	-		CCNA_03402	0.79	+2.5
3,572,007	-		CCNA_03402	0.79	+1.1
3,572,007	-		CCNA_03402	0.79	+1.0
3,572,007	-		CCNA_03402	0.79	-2.2
3,572,007	-		CCNA_03402	0.79	+0.3
3,572,007	-		CCNA_03402	0.79	-1.0
3,572,007	-		CCNA_03402	0.79	+0.6
3,572,007	-		CCNA_03402	0.79	-0.3
3,572,012	+		CCNA_03402	0.80	+0.5
3,572,013	-		CCNA_03402	0.80	-1.8
3,572,014	-		CCNA_03402	0.80	+2.2
3,572,014	-		CCNA_03402	0.80	+1.0
3,572,044	+		CCNA_03402	0.83	+0.9
3,572,046	-		CCNA_03402	0.83	-0.1
3,572,064	-		CCNA_03402	0.85	+0.7
3,572,099	-		CCNA_03402	0.89	-0.4
3,572,099	-		CCNA_03402	0.89	-1.5
3,572,147	-				+0.2
3,572,208	-				+0.3
3,572,215	+				-1.7
3,572,223	-				+0.5
3,572,223	-				+0.7
3,572,237	+				+1.0
3,572,237	-				+0.7
3,572,248	+				+0.7
3,572,283	+				-0.0
3,572,283	+				-1.7
3,572,301	-				+0.9
3,572,305	-		CCNA_03403	0.11	-0.3
3,572,324	+		CCNA_03403	0.20	+1.3
3,572,325	+		CCNA_03403	0.21	+0.8
3,572,348	-		CCNA_03403	0.32	-0.1
3,572,356	+		CCNA_03403	0.36	+1.3
3,572,365	-		CCNA_03403	0.40	+0.8
3,572,365	-		CCNA_03403	0.40	+2.5
3,572,381	-		CCNA_03403	0.48	+1.2
3,572,386	+		CCNA_03403	0.50	-0.2
3,572,386	-		CCNA_03403	0.50	+0.5
3,572,416	+		CCNA_03403	0.65	+3.1
3,572,437	+		CCNA_03403	0.75	+0.9
3,572,478	-				-1.4
3,572,495	+				+2.8
3,572,502	-				-1.3
3,572,502	-				+0.9
3,572,531	-				-1.4
3,572,549	+				-1.4
3,572,569	-				-0.7
3,572,569	-				-1.2
3,572,600	+				-0.6
3,572,615	+				+0.1
3,572,667	+				+1.0
3,572,708	-				-0.1
3,572,715	-				+3.5
3,572,718	+				+1.1
3,572,734	+		CCNA_03404	0.13	+1.6
3,572,734	+		CCNA_03404	0.13	+1.9
3,572,752	-		CCNA_03404	0.16	+2.5
3,572,775	-		CCNA_03404	0.21	-0.1
3,572,786	-		CCNA_03404	0.23	-1.0
3,572,797	+		CCNA_03404	0.25	+1.9
3,572,830	-		CCNA_03404	0.31	-1.7
3,572,847	+		CCNA_03404	0.35	+1.4
3,572,847	+		CCNA_03404	0.35	+2.0
3,572,847	+		CCNA_03404	0.35	-0.8
3,572,847	+		CCNA_03404	0.35	+2.0
3,572,847	+		CCNA_03404	0.35	+1.1
3,572,847	+		CCNA_03404	0.35	+0.0
3,572,847	+		CCNA_03404	0.35	+1.5
3,572,902	+		CCNA_03404	0.45	+1.1
3,572,926	+		CCNA_03404	0.50	+2.2
3,572,981	+		CCNA_03404	0.61	+1.3
3,572,982	+		CCNA_03404	0.61	+1.9
3,573,026	-		CCNA_03404	0.70	-0.5
3,573,033	-		CCNA_03404	0.71	+0.5
3,573,035	+		CCNA_03404	0.72	+1.1
3,573,050	-		CCNA_03404	0.75	+1.5
3,573,065	+		CCNA_03404	0.77	+1.9
3,573,103	-		CCNA_03404	0.85	-1.6
3,573,135	+				+1.8
3,573,135	+				+2.4
3,573,148	-				+0.9
3,573,174	+				+1.0
3,573,175	-				+1.8
3,573,175	-				-1.5
3,573,182	-				+0.1
3,573,182	-				-2.0
3,573,182	-				-1.3
3,573,193	-				-2.0
3,573,201	+				+3.1
3,573,243	-				-1.1
3,573,260	+		CCNA_03405	0.10	+1.5
3,573,260	+		CCNA_03405	0.10	+0.0
3,573,260	+		CCNA_03405	0.10	-2.4
3,573,269	-		CCNA_03405	0.12	-0.5
3,573,313	-		CCNA_03405	0.18	+0.4
3,573,397	-		CCNA_03405	0.31	-0.5
3,573,875	+				+0.9
3,573,887	+				-0.5
3,573,887	+				-1.2
3,573,895	-				+0.5
3,573,895	-				+0.2
3,573,905	+				-0.3