Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03384

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,556,325	-		CCNA_03383	0.59	+1.5
3,556,353	-		CCNA_03383	0.60	+0.2
3,556,355	+		CCNA_03383	0.60	-0.7
3,556,363	-		CCNA_03383	0.61	+0.1
3,556,363	-		CCNA_03383	0.61	+1.5
3,556,363	-		CCNA_03383	0.61	-0.1
3,556,365	-		CCNA_03383	0.61	-0.3
3,556,373	-		CCNA_03383	0.61	-0.3
3,556,390	-		CCNA_03383	0.62	-1.0
3,556,406	-		CCNA_03383	0.63	-0.4
3,556,408	+		CCNA_03383	0.63	+0.5
3,556,411	-		CCNA_03383	0.63	+0.9
3,556,416	-		CCNA_03383	0.64	-1.3
3,556,416	-		CCNA_03383	0.64	-0.7
3,556,430	-		CCNA_03383	0.64	-0.8
3,556,491	-		CCNA_03383	0.68	-0.5
3,556,543	-		CCNA_03383	0.71	-2.1
3,556,553	-		CCNA_03383	0.71	+1.5
3,556,563	-		CCNA_03383	0.72	+0.5
3,556,580	+		CCNA_03383	0.73	-0.7
3,556,632	-		CCNA_03383	0.75	-0.3
3,556,634	-		CCNA_03383	0.75	+0.5
3,556,655	+		CCNA_03383	0.77	-0.8
3,556,673	-		CCNA_03383	0.78	+2.5
3,556,684	+		CCNA_03383	0.78	-0.5
3,556,685	-		CCNA_03383	0.78	-1.2
3,556,686	+		CCNA_03383	0.78	-1.3
3,556,770	+		CCNA_03383	0.83	-0.3
3,556,778	-		CCNA_03383	0.83	+1.5
3,556,815	-		CCNA_03383	0.85	+0.9
3,556,819	+		CCNA_03383	0.85	-1.3
3,556,819	+		CCNA_03383	0.85	+1.5
3,556,819	+		CCNA_03383	0.85	+0.5
3,556,828	-		CCNA_03383	0.86	+1.5
3,556,842	+		CCNA_03383	0.87	-0.1
3,556,867	+		CCNA_03383	0.88	+0.5
3,556,875	-		CCNA_03383	0.88	-0.2
3,556,875	-		CCNA_03383	0.88	-0.7
3,556,875	-		CCNA_03383	0.88	+1.5
3,556,879	+		CCNA_03383	0.89	+0.9
3,556,881	-		CCNA_03383	0.89	+0.9
3,556,897	-		CCNA_03383	0.90	+0.2
3,556,954	+				+2.5
3,557,009	+				+4.6
3,557,010	-				-0.8
3,557,017	-				-1.5
3,557,023	-				+0.2
3,557,047	+				-0.5
3,557,056	-				-1.3
3,557,089	-				+1.0
3,557,094	-				+1.5
3,557,116	+				+1.4
3,557,116	+				+1.3
3,557,159	+				-0.3
3,557,182	-				-0.5
3,557,262	+		CCNA_03384	0.21	+2.9
3,557,325	+		CCNA_03384	0.48	+2.9
3,557,401	+		CCNA_03384	0.81	+3.9
3,557,437	+				+4.2
3,557,558	+				-0.2
3,557,566	-				+0.4
3,557,604	-				+0.3
3,557,644	+				-1.6
3,557,644	+				-0.3
3,557,645	-				+3.5
3,557,652	-				+0.6
3,557,729	+		CCNA_03385	0.17	-0.9
3,557,748	-		CCNA_03385	0.21	-0.7
3,557,762	+		CCNA_03385	0.24	+1.1
3,557,785	-		CCNA_03385	0.28	-0.1
3,557,798	-		CCNA_03385	0.31	+1.0
3,557,828	+		CCNA_03385	0.37	+0.9
3,557,830	+		CCNA_03385	0.38	+1.2
3,557,854	-		CCNA_03385	0.43	+0.1
3,557,865	-		CCNA_03385	0.45	+1.8
3,557,865	-		CCNA_03385	0.45	-1.0
3,557,865	-		CCNA_03385	0.45	-0.1
3,557,885	-		CCNA_03385	0.49	-1.2
3,557,890	+		CCNA_03385	0.50	-0.5
3,557,890	+		CCNA_03385	0.50	+0.9
3,557,898	-		CCNA_03385	0.52	-1.2
3,557,900	+		CCNA_03385	0.52	+1.5
3,557,924	-		CCNA_03385	0.57	-2.1
3,557,969	+		CCNA_03385	0.66	+0.2
3,558,042	+		CCNA_03385	0.81	-2.0
3,558,074	+		CCNA_03385	0.88	-2.1
3,558,118	+				-0.3
3,558,163	+				-0.6
3,558,165	+				+0.3
3,558,173	-				+0.2
3,558,173	-				-0.7
3,558,175	+				-0.7
3,558,179	+				+0.5
3,558,204	+				+1.1
3,558,204	-				+0.0
3,558,218	-				+0.9
3,558,218	-				+2.5
3,558,235	+				+0.3
3,558,235	-				-0.4
3,558,243	-				-1.0
3,558,301	-				-0.8
3,558,310	+				-0.3
3,558,310	+				+0.3
3,558,310	+				+3.5
3,558,318	-				-1.4
3,558,318	-				-1.3
3,558,318	-				+0.7
3,558,318	-				-0.1
3,558,324	+				-0.4
3,558,383	+				-1.0
3,558,391	-				+1.9
3,558,393	+				+1.5
3,558,393	+				-0.4
3,558,395	+				+0.2
3,558,401	-				-2.5
3,558,424	-		CCNA_03386	0.11	+2.7
3,558,439	+		CCNA_03386	0.11	-0.4
3,558,440	+		CCNA_03386	0.11	-0.5
3,558,442	-		CCNA_03386	0.11	+0.5