Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03364

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,541,378	-		CCNA_03362	0.19	+0.9
3,541,378	-		CCNA_03362	0.19	+0.4
3,541,378	-		CCNA_03362	0.19	+0.1
3,541,384	-		CCNA_03362	0.21	+0.6
3,541,408	+		CCNA_03362	0.25	-0.3
3,541,458	-		CCNA_03362	0.34	-0.7
3,541,458	-		CCNA_03362	0.34	+0.2
3,541,560	+		CCNA_03362	0.53	-0.6
3,541,568	-		CCNA_03362	0.55	-0.3
3,541,600	-		CCNA_03362	0.61	+3.1
3,541,600	-		CCNA_03362	0.61	+0.5
3,541,600	-		CCNA_03362	0.61	+0.1
3,541,609	+				+2.5
3,541,609	+		CCNA_03362	0.62	+0.2
3,541,617	-		CCNA_03362	0.64	+0.9
3,541,617	-		CCNA_03362	0.64	-1.6
3,541,630	-		CCNA_03362	0.66	-0.4
3,541,632	-		CCNA_03362	0.66	+0.2
3,541,673	-		CCNA_03362	0.74	+0.5
3,541,708	-		CCNA_03362	0.81	-0.5
3,541,713	+		CCNA_03362	0.81	+0.2
3,541,713	+		CCNA_03362	0.81	+0.9
3,541,721	-		CCNA_03362	0.83	+0.5
3,541,726	-		CCNA_03362	0.84	+0.2
3,541,729	+		CCNA_03362	0.84	-1.4
3,541,736	-		CCNA_03362	0.86	-1.2
3,541,845	+				-1.5
3,541,850	-				+1.5
3,541,853	-				+0.4
3,541,854	-				-0.3
3,541,921	-				-0.1
3,541,943	+				+1.5
3,541,959	+				-2.3
3,541,959	+				-1.1
3,541,959	-				-2.6
3,541,967	-				+0.9
3,541,967	-				-0.3
3,541,967	-				+1.2
3,541,987	-				+0.5
3,541,992	-				-0.6
3,541,992	-				+0.9
3,542,089	-		CCNA_03363	0.31	-2.2
3,542,089	-		CCNA_03363	0.31	-1.2
3,542,089	-		CCNA_03363	0.31	+0.5
3,542,108	+		CCNA_03363	0.38	+0.4
3,542,108	+		CCNA_03363	0.38	-0.2
3,542,108	+		CCNA_03363	0.38	+0.2
3,542,108	-		CCNA_03363	0.38	-0.8
3,542,116	-		CCNA_03363	0.41	-0.2
3,542,128	-		CCNA_03363	0.45	-0.3
3,542,128	-		CCNA_03363	0.45	+1.5
3,542,155	-		CCNA_03363	0.55	-2.1
3,542,176	+		CCNA_03363	0.62	+0.1
3,542,197	-		CCNA_03363	0.70	-1.4
3,542,203	+		CCNA_03363	0.72	+0.9
3,542,214	+		CCNA_03363	0.76	-0.3
3,542,254	-				+0.0
3,542,285	-				-1.8
3,542,312	-				+0.8
3,542,323	-				-0.6
3,542,323	-				+0.1
3,542,328	+				-0.3
3,542,328	+				-1.5
3,542,358	-				+2.5
3,542,382	-				-1.6
3,542,428	-				-0.6
3,542,435	+				+0.7
3,542,457	+		CCNA_03364	0.12	+0.2
3,542,457	+		CCNA_03364	0.12	-2.1
3,542,531	+		CCNA_03364	0.20	+2.0
3,542,531	+		CCNA_03364	0.20	+0.5
3,542,539	-		CCNA_03364	0.21	-1.0
3,542,539	-		CCNA_03364	0.21	-1.3
3,542,539	-		CCNA_03364	0.21	-2.6
3,542,549	-		CCNA_03364	0.23	-1.5
3,542,566	+		CCNA_03364	0.25	-0.2
3,542,584	+		CCNA_03364	0.27	-0.9
3,542,585	+		CCNA_03364	0.27	+1.0
3,542,606	+		CCNA_03364	0.29	-0.0
3,542,606	+		CCNA_03364	0.29	+2.5
3,542,614	-		CCNA_03364	0.30	+0.5
3,542,614	-		CCNA_03364	0.30	-1.8
3,542,640	-		CCNA_03364	0.33	+0.2
3,542,640	-		CCNA_03364	0.33	+1.0
3,542,640	-		CCNA_03364	0.33	-0.0
3,542,642	+		CCNA_03364	0.34	-0.9
3,542,642	+		CCNA_03364	0.34	-1.5
3,542,674	-		CCNA_03364	0.37	-1.4
3,542,674	-		CCNA_03364	0.37	+0.5
3,542,674	-		CCNA_03364	0.37	-1.2
3,542,674	-		CCNA_03364	0.37	+1.5
3,542,674	-		CCNA_03364	0.37	-0.5
3,542,682	-		CCNA_03364	0.38	+3.5
3,542,712	+		CCNA_03364	0.42	-0.3
3,542,741	+		CCNA_03364	0.45	-0.3
3,542,801	-		CCNA_03364	0.52	-1.3
3,542,811	-		CCNA_03364	0.54	+2.9
3,542,849	+		CCNA_03364	0.58	+1.8
3,542,849	+		CCNA_03364	0.58	-0.9
3,542,865	-		CCNA_03364	0.60	-2.5
3,542,878	+		CCNA_03364	0.62	-2.1
3,542,886	-		CCNA_03364	0.63	-0.6
3,542,886	-		CCNA_03364	0.63	+0.2
3,542,911	+		CCNA_03364	0.65	-1.6
3,542,919	-		CCNA_03364	0.66	-1.5
3,542,919	-		CCNA_03364	0.66	-2.1
3,542,951	-		CCNA_03364	0.70	+0.4
3,542,988	-		CCNA_03364	0.75	+0.8
3,542,988	-		CCNA_03364	0.75	+1.0
3,542,990	+		CCNA_03364	0.75	+0.7
3,542,998	-		CCNA_03364	0.76	+0.2
3,542,998	-		CCNA_03364	0.76	-1.6
3,543,044	-		CCNA_03364	0.81	+1.5
3,543,044	-		CCNA_03364	0.81	-1.7
3,543,054	-		CCNA_03364	0.82	-1.6
3,543,077	-		CCNA_03364	0.85	+0.5
3,543,077	-		CCNA_03364	0.85	-0.0
3,543,079	+		CCNA_03364	0.85	-0.0
3,543,080	+		CCNA_03364	0.86	-1.3
3,543,080	+		CCNA_03364	0.86	-1.0
3,543,080	+		CCNA_03364	0.86	-0.5
3,543,080	+		CCNA_03364	0.86	-1.0
3,543,080	+		CCNA_03364	0.86	-0.9
3,543,088	-		CCNA_03364	0.86	-1.2
3,543,088	-		CCNA_03364	0.86	-0.5
3,543,088	-		CCNA_03364	0.86	-1.0
3,543,088	-		CCNA_03364	0.86	+0.2
3,543,100	+		CCNA_03364	0.88	-0.9
3,543,118	-				-0.9
3,543,165	-				+1.2
3,543,225	-				-1.5
3,543,283	-		CCNA_03365	0.12	-2.0
3,543,288	-		CCNA_03365	0.12	-0.4
3,543,295	-		CCNA_03365	0.13	+1.5
3,543,302	-		CCNA_03365	0.14	-0.1
3,543,333	-		CCNA_03365	0.18	-1.2
3,543,333	-		CCNA_03365	0.18	-0.5
3,543,352	+		CCNA_03365	0.21	+0.4
3,543,354	+		CCNA_03365	0.21	-0.5
3,543,370	-		CCNA_03365	0.23	+1.5
3,543,492	-		CCNA_03365	0.39	-1.5
3,543,500	+		CCNA_03365	0.40	-2.5
3,543,505	+		CCNA_03365	0.41	+2.5
3,543,505	+		CCNA_03365	0.41	+0.5
3,543,505	+		CCNA_03365	0.41	-0.3
3,543,509	+		CCNA_03365	0.41	-1.3
3,543,513	-		CCNA_03365	0.42	+0.5
3,543,513	-		CCNA_03365	0.42	-0.8
3,543,546	-		CCNA_03365	0.46	+0.6
3,543,551	+		CCNA_03365	0.47	-1.0
3,543,551	+		CCNA_03365	0.47	+0.4
3,543,638	-		CCNA_03365	0.58	-0.5
3,543,655	-		CCNA_03365	0.60	-1.3
3,543,682	-		CCNA_03365	0.64	-0.3
3,543,686	-		CCNA_03365	0.64	-0.0
3,543,727	+		CCNA_03365	0.70	+1.2
3,543,727	+		CCNA_03365	0.70	+0.1
3,543,744	+		CCNA_03365	0.72	-2.4
3,543,744	+		CCNA_03365	0.72	-0.6
3,543,749	+		CCNA_03365	0.73	-0.5
3,543,752	-		CCNA_03365	0.73	-1.7
3,543,829	-		CCNA_03365	0.83	+0.5
3,543,837	-		CCNA_03365	0.84	-1.0
3,543,846	-		CCNA_03365	0.85	-0.9
3,543,851	+		CCNA_03365	0.86	-0.0
3,543,863	+		CCNA_03365	0.87	-1.2
3,543,932	+				+1.5
3,543,933	+				-0.8
3,543,952	+				+2.5
3,543,960	-				-2.3
3,543,985	+				-0.5
3,543,993	-				+0.5
3,543,993	-				+0.5
3,544,033	+		CCNA_03366	0.17	+0.5
3,544,082	-		CCNA_03366	0.28	-0.3
3,544,107	+		CCNA_03366	0.34	+1.9
3,544,120	+		CCNA_03366	0.36	+0.4
3,544,120	+		CCNA_03366	0.36	+0.2
3,544,137	+		CCNA_03366	0.40	-0.3
3,544,137	+		CCNA_03366	0.40	+1.5
3,544,137	+		CCNA_03366	0.40	+0.5
3,544,145	-		CCNA_03366	0.42	+0.5
3,544,145	-		CCNA_03366	0.42	+2.5
3,544,147	+		CCNA_03366	0.42	+0.2
3,544,147	+		CCNA_03366	0.42	-1.4
3,544,147	+		CCNA_03366	0.42	+1.0
3,544,154	-		CCNA_03366	0.44	-0.8
3,544,155	-		CCNA_03366	0.44	-1.0
3,544,155	-		CCNA_03366	0.44	+0.5
3,544,155	-		CCNA_03366	0.44	-2.0
3,544,155	-		CCNA_03366	0.44	+1.0
3,544,155	-		CCNA_03366	0.44	+1.0
3,544,169	+		CCNA_03366	0.47	-0.2
3,544,177	-		CCNA_03366	0.49	+0.5