Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03318

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,495,380	-		CCNA_03317	0.73	-0.2
3,495,390	-		CCNA_03317	0.74	-0.9
3,495,390	-		CCNA_03317	0.74	+0.3
3,495,390	-		CCNA_03317	0.74	-1.1
3,495,390	-		CCNA_03317	0.74	-0.0
3,495,390	-		CCNA_03317	0.74	-0.1
3,495,411	-		CCNA_03317	0.74	+1.0
3,495,465	+		CCNA_03317	0.76	-1.5
3,495,483	+		CCNA_03317	0.76	-1.0
3,495,507	+		CCNA_03317	0.77	+0.4
3,495,513	-		CCNA_03317	0.77	+2.6
3,495,547	-		CCNA_03317	0.78	-1.5
3,495,561	+		CCNA_03317	0.79	-0.3
3,495,569	-		CCNA_03317	0.79	-0.0
3,495,569	-		CCNA_03317	0.79	+0.6
3,495,577	-		CCNA_03317	0.79	-1.5
3,495,587	+		CCNA_03317	0.80	+1.0
3,495,595	-		CCNA_03317	0.80	-0.2
3,495,619	-		CCNA_03317	0.81	-0.2
3,495,626	-		CCNA_03317	0.81	-0.2
3,495,693	-		CCNA_03317	0.83	-1.5
3,495,734	+		CCNA_03317	0.84	+0.6
3,495,734	+		CCNA_03317	0.84	+0.5
3,495,734	+		CCNA_03317	0.84	-0.6
3,495,742	-		CCNA_03317	0.84	+1.6
3,495,742	-		CCNA_03317	0.84	+0.6
3,495,759	-		CCNA_03317	0.85	+0.6
3,495,770	+		CCNA_03317	0.85	-1.0
3,495,770	+		CCNA_03317	0.85	-1.1
3,495,770	+		CCNA_03317	0.85	+2.6
3,495,775	+		CCNA_03317	0.85	-2.4
3,495,778	-		CCNA_03317	0.86	-1.0
3,495,778	-		CCNA_03317	0.86	-0.7
3,495,778	-		CCNA_03317	0.86	+0.6
3,495,778	-		CCNA_03317	0.86	+1.6
3,495,778	-		CCNA_03317	0.86	-0.0
3,495,778	-		CCNA_03317	0.86	-0.9
3,495,792	+		CCNA_03317	0.86	-1.1
3,495,792	+		CCNA_03317	0.86	+0.6
3,495,810	+		CCNA_03317	0.87	-1.1
3,495,949	-				-0.7
3,496,014	+				-2.4
3,496,022	-				+0.3
3,496,090	+				-0.0
3,496,093	-				+0.6
3,496,105	+				+0.6
3,496,170	+				-1.7
3,496,216	+				-0.5
3,496,224	-				-0.2
3,496,229	+				+0.7
3,496,237	-				-0.0
3,496,254	+				+1.1
3,496,262	-				-0.4
3,496,303	+				-0.1
3,496,303	+				-1.5
3,496,303	+				-0.0
3,496,303	+				-1.2
3,496,303	+				-1.4
3,496,311	-				-1.3
3,496,311	-				-1.9
3,496,311	-				-1.2
3,496,311	-				+1.0
3,496,311	-				-0.3
3,496,312	-				+0.5
3,496,312	-				-0.6
3,496,312	-				-2.1
3,496,318	-				-1.5
3,496,334	-				+1.7
3,496,369	-				-1.1
3,496,384	-				+1.4
3,496,385	+				+0.1
3,496,393	-				+2.0
3,496,393	-				+1.1
3,496,441	+				-1.7
3,496,441	+				+1.0
3,496,441	+				-2.0
3,496,441	+				+1.8
3,496,441	+				-0.2
3,496,449	-				+0.4
3,496,449	-				-0.2
3,496,449	-				-1.2
3,496,449	-				-0.1
3,496,476	+				-1.2
3,496,511	-				-0.6
3,496,534	-		CCNA_03318	0.12	-1.7
3,496,550	+		CCNA_03318	0.13	-1.6
3,496,558	+		CCNA_03318	0.13	-0.9
3,496,698	-		CCNA_03318	0.24	-0.4
3,496,793	+		CCNA_03318	0.30	-1.6
3,496,809	-		CCNA_03318	0.32	-1.1
3,496,838	+		CCNA_03318	0.34	-1.8
3,496,851	-		CCNA_03318	0.35	-1.6
3,496,869	-		CCNA_03318	0.36	-1.4
3,496,905	+		CCNA_03318	0.39	+0.1
3,496,905	+		CCNA_03318	0.39	-1.1
3,496,905	+		CCNA_03318	0.39	+0.6
3,496,913	-		CCNA_03318	0.39	+0.7
3,496,945	+		CCNA_03318	0.41	+0.5
3,496,953	-		CCNA_03318	0.42	-0.7
3,496,960	+		CCNA_03318	0.43	-2.1
3,497,001	-		CCNA_03318	0.46	+0.6
3,497,031	-		CCNA_03318	0.48	-0.1
3,497,036	+		CCNA_03318	0.48	+3.6
3,497,044	-		CCNA_03318	0.49	+1.6
3,497,094	-		CCNA_03318	0.52	-0.7
3,497,098	+		CCNA_03318	0.53	-1.8
3,497,103	+		CCNA_03318	0.53	-0.4
3,497,103	+		CCNA_03318	0.53	-1.0
3,497,103	+		CCNA_03318	0.53	-0.7
3,497,106	-		CCNA_03318	0.53	+2.6
3,497,108	+		CCNA_03318	0.53	+1.6
3,497,111	-		CCNA_03318	0.54	-0.9
3,497,111	-		CCNA_03318	0.54	-0.9
3,497,111	-		CCNA_03318	0.54	-0.5
3,497,136	-		CCNA_03318	0.55	+0.3
3,497,141	+		CCNA_03318	0.56	+0.3
3,497,147	-		CCNA_03318	0.56	-0.2
3,497,177	+		CCNA_03318	0.58	-0.7
3,497,182	+		CCNA_03318	0.59	-0.4
3,497,216	-		CCNA_03318	0.61	+0.3
3,497,216	-		CCNA_03318	0.61	-1.1
3,497,263	+		CCNA_03318	0.65	-1.1
3,497,298	+		CCNA_03318	0.67	+1.0
3,497,306	-		CCNA_03318	0.68	-0.6
3,497,317	-		CCNA_03318	0.68	-0.2
3,497,319	+		CCNA_03318	0.69	+1.0
3,497,351	-		CCNA_03318	0.71	-2.1
3,497,364	+		CCNA_03318	0.72	-1.1
3,497,372	-		CCNA_03318	0.72	-0.3
3,497,432	-		CCNA_03318	0.77	-1.1
3,497,442	-		CCNA_03318	0.78	-1.1
3,497,451	+		CCNA_03318	0.78	-1.7
3,497,459	-		CCNA_03318	0.79	+3.0
3,497,551	+		CCNA_03318	0.85	+0.4
3,497,577	+		CCNA_03318	0.87	+0.3
3,497,645	-				-0.0
3,497,649	+				-1.2
3,497,649	+				-1.2
3,497,655	-				+0.3
3,497,657	-				-0.4
3,497,657	-				-0.2
3,497,705	-				+1.7
3,497,708	+				+0.5
3,497,708	+				-0.0
3,497,709	+				+0.3
3,497,746	+				+0.7
3,497,748	+				+2.0
3,497,754	-				-2.9
3,497,754	-				-0.7
3,497,811	+				+0.7
3,497,817	+				+0.6
3,497,825	-				+0.5
3,497,863	+				-0.6
3,497,916	+				-0.2
3,497,917	-				-1.1
3,497,924	-				-0.0
3,498,002	+				+0.6
3,498,022	+		CCNA_03319	0.11	+2.6
3,498,065	-		CCNA_03319	0.17	-0.7
3,498,082	-		CCNA_03319	0.19	-1.3
3,498,092	+		CCNA_03319	0.20	+0.7
3,498,102	+		CCNA_03319	0.21	-0.2
3,498,107	+		CCNA_03319	0.22	+0.1
3,498,133	-		CCNA_03319	0.25	-1.0
3,498,140	-		CCNA_03319	0.26	+0.5
3,498,155	-		CCNA_03319	0.28	+0.3
3,498,162	+		CCNA_03319	0.29	+0.3
3,498,214	-		CCNA_03319	0.35	+0.0
3,498,220	+		CCNA_03319	0.36	-0.8
3,498,228	-		CCNA_03319	0.37	-0.5
3,498,264	-		CCNA_03319	0.41	-0.9
3,498,269	-		CCNA_03319	0.42	-0.2
3,498,285	+		CCNA_03319	0.44	+2.6
3,498,293	-		CCNA_03319	0.45	+2.0
3,498,301	-		CCNA_03319	0.46	-1.0
3,498,330	-		CCNA_03319	0.50	+0.3
3,498,330	-		CCNA_03319	0.50	-0.4
3,498,349	-		CCNA_03319	0.52	+0.7
3,498,387	+		CCNA_03319	0.57	-0.6
3,498,417	-		CCNA_03319	0.61	+1.0
3,498,450	+		CCNA_03319	0.65	-0.0
3,498,455	+		CCNA_03319	0.65	-0.9
3,498,455	+		CCNA_03319	0.65	-0.2
3,498,463	-		CCNA_03319	0.66	-1.0
3,498,463	-		CCNA_03319	0.66	+0.1
3,498,489	+		CCNA_03319	0.70	+1.6
3,498,496	+		CCNA_03319	0.70	-1.4
3,498,546	+		CCNA_03319	0.77	-0.2
3,498,556	+		CCNA_03319	0.78	-0.2
3,498,561	+		CCNA_03319	0.79	-0.4
3,498,561	+		CCNA_03319	0.79	-2.8
3,498,569	-		CCNA_03319	0.80	+1.0
3,498,631	-		CCNA_03319	0.87	-0.9
3,498,641	-		CCNA_03319	0.89	-1.1
3,498,690	-				-0.2
3,498,695	-				+0.1